HEXA
HEXA is a human gene that encodes the alpha subunit of beta-hexosaminidase A, a lysosomal enzyme essential for degrading GM2 gangliosides in the central nervous system.[1][2] The HEXA gene is located on the long arm of chromosome 15 at position 15q23 and spans approximately 35 kilobases, consisting of 14 exons.[2][3] Beta-hexosaminidase A, formed by the alpha subunit from HEXA and the beta subunit from the related HEXB gene, hydrolyzes the non-reducing end of GM2 ganglioside by cleaving the bond between N-acetylgalactosamine and galactose, in complex with the GM2 activator protein encoded by GM2A.[1][4] This process prevents the toxic buildup of undegraded lipids in neurons, which is critical for normal brain and spinal cord function.[1] Mutations in HEXA, of which over 210 variants have been identified, impair beta-hexosaminidase A activity, leading to a spectrum of GM2 gangliosidoses classified by residual enzyme levels.[1][5] The most severe form, infantile Tay-Sachs disease (GM2 gangliosidosis type I), results from near-complete enzyme deficiency, causing progressive neurodegeneration, cherry-red spot in the macula, and death typically by age four.[1][5] Less severe variants manifest as juvenile or late-onset forms with slower progression, while partial deficiencies contribute to milder phenotypes like adult-onset GM2 gangliosidosis.[5] Carrier screening and prenatal testing are recommended in high-risk populations, such as Ashkenazi Jewish communities, due to the autosomal recessive inheritance pattern.[1][5]Genetics
Genomic Location and Structure
The HEXA gene is located on the long arm of human chromosome 15 at cytogenetic band 15q23, specifically spanning genomic coordinates 72,340,924 to 72,376,420 (GRCh38 assembly) on the reverse strand, encompassing approximately 35 kb of DNA.[2][6] The gene consists of 14 exons interrupted by 13 introns, with exon lengths varying from 47 bp to 3,217 bp; the introns range in size from several hundred bp to over 10 kb, defining precise splice junctions that follow consensus GT-AG rules at boundaries.[7][8] The exons are as follows:| Exon | Size (bp) |
|---|---|
| 1 | 295 |
| 2 | 93 |
| 3 | 66 |
| 4 | 47 |
| 5 | 111 |
| 6 | 102 |
| 7 | 133 |
| 8 | 181 |
| 9 | 87 |
| 10 | 73 |
| 11 | 184 |
| 12 | 91 |
| 13 | 105 |
| 14 | 3,217 |