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Cycloheximide

Cycloheximide is a naturally occurring glutarimide produced by the soil bacterium griseus, first isolated in 1946 by mycologist Alma Whiffen at the Company as a product of bacterial fermentation originally named actidione. With the C<sub>15</sub>H<sub>23</sub>NO<sub>4</sub> and a molecular weight of 281.35 g/mol, it is a crystalline solid soluble in organic solvents like and DMSO but poorly soluble in water. Primarily known as a potent inhibitor of eukaryotic protein synthesis, cycloheximide binds to the E-site of the 60S ribosomal subunit, preventing the translocation of peptidyl-tRNA and halting translation elongation without affecting prokaryotic ribosomes. In research, cycloheximide is extensively employed as a tool to investigate cellular processes dependent on protein and turnover, such as the cycloheximide (CHX) , where cells are treated with concentrations like 50 μg/mL to block new protein production and measure existing protein half-lives via techniques including western blotting. It has been used since the mid-20th century to study dynamics, , and responses to protein inhibition in model organisms like (Saccharomyces cerevisiae), where it induces G1 phase arrest at low doses (0.5–10 μg/mL) and reveals proteasome-related resistance mechanisms in mutants. Beyond academia, its antifungal properties—effective against fungi, , , and higher —led to early veterinary and agricultural applications, such as controlling fungal diseases in crops and turf, though its high toxicity limits broader use. Cycloheximide's unique sensory profile adds to its notability; it elicits extreme bitterness in via specific T2R G-protein-coupled taste receptors (e.g., mT2R5 in mice), triggering aversion at micromolar concentrations and serving as a potent repellent, with rats preferring over ingestion of 15 μM solutions. This property stems from its detection by glossopharyngeal and vagal nerves rather than the , highlighting evolutionary adaptations to natural toxins. However, its —causing rapid , mitochondrial damage, and potential interference with p53-dependent pathways—necessitates careful handling, and it is not approved for therapeutic use due to these risks. Derivatives, such as C13-aminobenzoyl cycloheximide, have been developed to enhance specificity for translation studies while reducing off-target effects.

History and Discovery

Discovery

Cycloheximide was first reported in 1946 by Alma Joslyn Whiffen, a mycologist at the Upjohn Company, during a screening program for antibiotics produced by soil bacteria. Working with colleagues Nestor Bohonos and Robert L. Emerson, Whiffen identified antifungal activity in fermentation broths from , the same bacterium known for producing . This discovery emerged from routine assays testing microbial extracts against fungal pathogens, highlighting the potential of actinomycetes as sources of novel antifungal agents. The compound was isolated from S. griseus fermentations and initially named Actidione, reflecting its origin from an actinomycete and its fungicidal action. Early isolation efforts at involved extracting the active substance from culture filtrates using organic solvents like , yielding a crude product that inhibited a range of fungi. In 1948, further purification by B.E. Leach and J.H. Ford resulted in a crystalline form, characterized with the empirical molecular formula C<sub>15</sub>H<sub>23</sub>NO<sub>4</sub> and a melting point of approximately 115–119°C. Initial antifungal testing demonstrated potent activity against dermatophytes such as Trichophyton species and Microsporum species, with minimum inhibitory concentrations as low as 0.1–1.0 μg/mL in agar diffusion assays. Key milestones followed rapidly, including a U.S. filed on October 19, 1946, by Whiffen, Emerson, and Bohonos, which was granted in 1951 as U.S. 2,574,519 for the compound and its production process. initiated commercial production of Actidione (later renamed cycloheximide) in the early , establishing it as a valuable tool for agricultural and medical . These developments marked the transition from laboratory curiosity to practical antifungal agent, though its eukaryotic specificity limited broader antibiotic applications.

Biosynthesis and Production

Cycloheximide is biosynthesized by Streptomyces griseus through a hybrid pathway combining elements of and , primarily orchestrated by an acyltransferase-less type I (PKS) and tailoring enzymes encoded in a . The pathway assembles the characteristic glutarimide ring and cyclohexene moiety using as the main extender unit for the polyketide chain, along with an precursor—such as L-isoleucine—that contributes to the carbon framework and nitrogen incorporation via an (AMT) and amidotransferase (e.g., ChxD). In some strains, the cluster includes non-ribosomal peptide synthetase (NRPS) domains, such as a domain in orfX, to facilitate bond formation in the glutarimide moiety. The core enzymatic steps begin with loading of malonyl-CoA onto an acyl carrier protein (ACP) by an external acyltransferase (AT), followed by iterative condensations in the PKS modules (ChxE with five modules containing ketosynthase [KS], dehydratase [DH], enoylreductase [ER], methyltransferase [MT], and ACP domains) to build a linear polyketide chain incorporating six malonyl-CoA units and two S-adenosylmethionine (SAM) methyl groups. Cyclization occurs via an X domain-mediated Michael addition or intramolecular acylation of the amide nitrogen, releasing preactiphenol as an intermediate and forming the glutarimide ring. Tailoring modifications follow, including oxidation at C-8 by a cytochrome P450 (ChxI), ketoreduction of the enoyl group, and phenol reduction to cyclohexanone by ketoreductases (ChxG and ChxH), culminating in the mature cycloheximide structure. Industrial production of cycloheximide relies on submerged of S. griseus in nutrient-rich , typically containing 60 g/L glucose monohydrate as the carbon source and 14 g/L defatted as the primary nitrogen source, supplemented with 2.5 g/L , 5 g/L , 8 g/L , 4 g/L NaCl, and 1 g/L KH₂PO₄. Cultures are maintained at 25°C with agitation at 300 rpm and aeration at 250 L/min air per liter, initiating fed-batch glucose infusion (0.24 g/h/L) after 48 hours to sustain growth, minimize degradation, and boost accumulation. Strain improvement via and selection, combined with process optimization, yields 1-2 g/L of cycloheximide after 5-10 days, representing a 43-52% enhancement over batch methods. Contemporary production challenges include inherent antibiotic self-degradation, low titers limited by feedback inhibition, and scalability issues due to the compound's eukaryotic toxicity. Recent 2020s genomic studies have identified split gene clusters in diverse Streptomyces strains, enabling targeted genetic engineering—such as PKS module overexpression and deletion of competing biosynthetic pathways—to pursue higher yields, though these efforts remain primarily at the laboratory scale amid regulatory hurdles for antifungal agents.

Chemical Properties

Molecular Structure

Cycloheximide possesses the molecular C_{15}H_{23}NO_{4} and a molecular weight of 281.35 g/. The core structure features a glutarimide ring, known chemically as piperidine-2,6-dione, which serves as the central scaffold. This ring is substituted at the 4-position with an ethyl bearing a hydroxyl group at the alpha carbon (position 2 of the chain). The terminal carbon of this is attached to a ring substituted with methyl groups at positions 3 and 5. The ketone functionality is located at position 2 of the , contributing to the molecule's overall rigidity and functional profile. This architecture positions key functional groups, including the imide nitrogens, carbonyls, and hydroxyl, in a manner that supports its interactions with biological targets. Cycloheximide contains four chiral centers, located at the 2-position of the and positions 1, 3, and 5 of the ring. The natural exhibits the (2R,1'S,3'S,5'S) configuration, corresponding to the systematic IUPAC designation 4-[(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl]piperidine-2,6-dione. This precise stereochemical arrangement is critical for the compound's biological potency, as stereoisomers such as isocycloheximide and epi-isocycloheximide demonstrate significantly reduced or altered and protein inhibitory activities. Structural analogs of cycloheximide, such as naramycin B and streptimidone, belong to the glutarimide family and share the core glutarimide motif but differ in side chain modifications. For instance, naramycin B features alterations in the hydroxyethyl linkage and cyclohexyl substituents, while streptimidone lacks the hydroxyl group and has a simplified unsaturated , influencing their relative potencies and specificities. These variations highlight how modifications to the ethyl and substituents can modulate activity while preserving the essential glutarimide framework.

Physical and Chemical Characteristics

Cycloheximide is typically isolated as a white to off-white crystalline powder or colorless crystals. This appearance facilitates its handling in laboratory settings, where it is often stored as a solid to maintain stability. The compound has a melting point ranging from 119.5 to 121 °C. Solubility is limited in water, with practical concentrations reaching approximately 20 mg/mL at room temperature when aided by sonication, though it is sparingly soluble without assistance. In contrast, it shows high solubility in organic solvents, such as ethanol (~14 mg/mL), DMSO (approximately 25 mg/mL), and acetone. Chemically, cycloheximide remains stable under neutral and acidic conditions, including ranges of 3 to 5 where solutions can persist for weeks under . However, it degrades rapidly in dilute alkaline solutions at , yielding products like 2,4-dimethylcyclohexanone. The compound is also sensitive to light, particularly radiation, necessitating protection from direct exposure during storage and use to prevent inactivation. Spectroscopic properties aid in its identification and analysis. reveals characteristic absorption bands for the carbonyl groups of the glutarimide ring near 1700 cm⁻¹. include distinct signals for the protons in the glutarimide moiety, typically observed in the 1H NMR spectrum around 2.5–3.5 ppm. occurs primarily below 290 nm, with no significant in the 290–700 nm range relevant to UV exposure.

Mechanism of Action

Inhibition of Protein Synthesis

Cycloheximide inhibits eukaryotic protein synthesis by binding to the E-site of the 60S ribosomal subunit, thereby preventing the translocation of peptidyl-tRNA from the A-site to the during the elongation phase of . This binding stabilizes the ribosome in a pre-translocation state, blocking the action of 2 () and halting further peptide chain extension after typically one translocation cycle. As a result, ribosomes become frozen on the mRNA, leading to the arrest of nascent polypeptide synthesis at short lengths, usually comprising only the first few . The binding pocket is formed by ribosomal proteins eL28 and eL36 near the E-site tRNA, positioning the within the peptide exit tunnel, with cycloheximide forming hydrogen bonds primarily with 25S/28S rRNA such as C3993 in helix 88. This steric hindrance clashes with the advancing peptidyl-tRNA, inhibiting its movement and effectively stalling the ribosome-mRNA complex. Structural studies using of cycloheximide-bound 80S ribosomes have confirmed these interactions, revealing how the inhibitor's and glutarimide rings anchor it in the tunnel to disrupt elongation dynamics. The inhibition is dose-dependent, with an IC<sub>50</sub> of approximately 0.1–1 μg/mL in cell-free systems derived from eukaryotic sources such as rabbit reticulocytes. The effect onset is rapid, occurring within minutes of exposure, and the binding is reversible upon removal of the inhibitor, allowing resumption of . Experimental evidence from pulse-chase assays demonstrates the accumulation of short nascent peptides on stalled , as labeled incorporate only briefly before ceases. Similarly, techniques reveal ribosome stalling and enrichment of footprints at early coding regions, underscoring the selective blockade during .

Specificity to Eukaryotes

Cycloheximide exhibits high specificity for eukaryotic ribosomes due to key structural differences between the eukaryotic 60S large subunit and the prokaryotic 50S subunit. The drug binds within the E-site of the 60S subunit, specifically at C3993 in 88 of the 28S rRNA, a region that interacts with ribosomal proteins L27a (eL28) and L36a (eL36), whose positioning and the surrounding rRNA form a binding pocket absent in the bacterial 50S subunit's 23S rRNA equivalent, preventing effective interaction and inhibition in prokaryotic systems. This structural mismatch results in no observable inhibition of bacterial protein synthesis, even at concentrations up to 100 μg/mL that fully arrest . In cell-free extracts from , cycloheximide fails to block peptide chain elongation, underscoring its inability to engage the prokaryotic ribosomal architecture effectively. Such selectivity has made it a valuable tool for distinguishing eukaryotic from prokaryotic in mixed systems. Cycloheximide shows partial activity within eukaryotic cells by inhibiting on cytosolic ribosomes but sparing organellar ribosomes in mitochondria and chloroplasts, which resemble prokaryotic 70S structures due to their endosymbiotic origins. These organellar ribosomes lack the eukaryotic-specific features of the 60S subunit, rendering them resistant to the drug and allowing continued of mitochondrially or chloroplast-encoded proteins. This differential sensitivity highlights the evolutionary in ribosomal across life's domains, as well as the prokaryotic heritage of organelles, enabling targeted studies of compartmentalized protein .

Biological Effects

Effects on Fungi and Other Eukaryotes

Cycloheximide demonstrates significant antifungal activity against a range of eukaryotic microbes, particularly yeasts such as Saccharomyces cerevisiae, where it inhibits growth and fermentation at concentrations of 1–5 μg/mL. This inhibition extends to other fungi like Candida species, with minimum inhibitory concentrations (MICs) typically ranging from 0.5–2 μg/mL in standard media. By blocking eukaryotic protein synthesis on 80S ribosomes, cycloheximide disrupts essential cellular processes, including cell wall synthesis and sporulation in sensitive fungi; for instance, it suppresses photo-induced sporulation in Trichoderma viride. In plants, cycloheximide induces the expression of genes encoding ethylene biosynthetic enzymes, thereby stimulating production, which plays a key role in regulating and ripening processes. A 2025 study demonstrated its algicidal effects against the species Phaeocystis globosa, where application at 250 μg/mL reduced chlorophyll a content by 50.5% and the quantum yield of (F<sub>v</sub>/F<sub>m</sub>) by 50% after 7 days, leading to inhibited and . In animal cells, cycloheximide arrests the at the in mammalian cell lines, such as rat glioma C6 cells, by partially inhibiting protein synthesis at low concentrations (e.g., 0.1–1 μg/mL). It also triggers in various mammalian cells, including hepatocytes, through mechanisms involving the rapid degradation of short-lived anti-apoptotic proteins like Mcl-1. Cycloheximide exhibits a broad spectrum of activity against eukaryotic organisms but displays variable sensitivity across taxa; while most fungi and yeasts are highly susceptible, certain groups like dermatophytes (e.g., Trichophyton species) show intrinsic resistance due to efflux transporters such as MFS1, enabling their isolation on cycloheximide-supplemented media. Similarly, some protozoa, including mutants of Tetrahymena pyriformis, exhibit resistance, highlighting adaptations in ribosomal function or drug efflux that mitigate its inhibitory effects.

Effects on Prokaryotes and Viruses

Cycloheximide exhibits minimal direct effects on prokaryotes due to its specificity for eukaryotic 80S ribosomes, leaving prokaryotic 70S ribosomes unaffected. At standard concentrations, it does not inhibit growth or protein synthesis in bacteria such as or the producing species Streptomyces griseus. This lack of activity on bacteria enables its use in selective media, often combined with antibacterial agents like , to isolate pathogenic fungi from mixed cultures contaminated by saprophytic fungi and bacteria. The compound's antiviral effects are primarily indirect, stemming from inhibition of host eukaryotic protein synthesis required for . It demonstrates strong activity against various viruses, including HIV-1, , coxsackie B, and , by blocking the translation of viral proteins dependent on host machinery. A 2025 study highlighted its mechanism against B3, where low concentrations (as little as 0.08 μM) activated signaling to suppress while completely halting viral replication across serotypes. In bacterial-fungal interactions, cycloheximide facilitates the study of symbiosis by selectively inhibiting fungal partners without affecting bacterial counterparts. For instance, Streptomyces species produce the compound to protect fungal gardens in ambrosia beetle mutualisms from eukaryotic competitors, allowing bacterial-fungal consortia to thrive. Emerging research explores cycloheximide's potential anticancer effects through indirect targeting of mitochondria in tumor cells, leveraging its inhibition of cytosolic protein synthesis to disrupt mitochondrial biogenesis and function. In cancer models, it sensitizes cells to apoptosis by preventing the synthesis of nuclear-encoded mitochondrial proteins, leading to reduced oxygen consumption and altered membrane potential. This approach highlights its utility in combination therapies for enhancing mitochondrial-dependent cell death pathways in malignancies.

Applications

Research Applications

Cycloheximide is extensively employed in the CHX chase assay to measure protein in eukaryotic cells. In this technique, cells are treated with cycloheximide to halt new protein synthesis, allowing researchers to monitor the degradation of existing proteins over time via western blotting, which quantifies protein levels at various intervals post-treatment. This method provides insights into protein stability and turnover rates, with half-lives calculated by fitting degradation curves to models, revealing regulatory mechanisms in processes like and stress responses. For instance, in models, systematic CHX chase assays have determined half-lives for over 3,700 proteins, highlighting short-lived regulators critical for cellular . In , cycloheximide arrests elongation on eukaryotic , enabling a snapshot of actively translating mRNAs by isolating and sequencing ribosome-protected fragments. This approach, pioneered in studies, reveals efficiency, ribosome occupancy, and regulatory elements like upstream open reading frames, aiding investigations into translational control during development and . By stabilizing ribosomes in a conformation, cycloheximide facilitates precise mapping of codon-specific pausing and global dynamics, though its use requires caution due to potential biases in uniformity across species. Cycloheximide serves as a selective agent in microbial ecology and to isolate prokaryotes by inhibiting eukaryotic growth, particularly fungi. In media, concentrations around 10-25 mg/L suppress and other eukaryotes while permitting bacterial proliferation, facilitating the study of prokaryotic communities in complex environments like soils or biofilms. In brewing applications, it is added to detection media for beer-spoilage microbes, where it inhibits contaminating yeasts, allowing enumeration of without interference. This selectivity exploits cycloheximide's specificity for ribosomes, enabling differentiation of microbial populations in mixed samples. Additional research techniques leverage cycloheximide's effects on specific pathways. In plant biology, it stimulates production in immature fruits like apples, providing a tool to dissect mechanisms by enhancing levels and observing downstream changes. In models of biogenesis, cycloheximide selectively blocks cytosolic , allowing isolated labeling of mitochondrial proteins with radioactive to probe synthesis rates and assembly of respiratory complexes. These applications underscore its utility in elucidating compartment-specific and hormonal regulation.

Industrial and Agricultural Uses

In the brewing industry, cycloheximide is incorporated into selective culture media to inhibit the growth of s and fungi during propagation and testing, thereby facilitating the isolation and detection of l spoilers without interference from eukaryotic contaminants. For instance, it is commonly added to Universal Beer Agar and at concentrations around 10 μg/mL to suppress s while permitting the growth of wild s or for assessments. This application leverages its specificity as an agent, ensuring reliable microbial monitoring in production processes. Historically, cycloheximide has been utilized as an agricultural to combat soil-borne fungal pathogens, particularly in protection against eukaryotic infections, though its application has diminished due to associated risks. More recently, emerging studies have demonstrated its potential as an algicide in , where it effectively controls harmful algal blooms by disrupting protein synthesis and photosynthetic processes in such as Phaeocystis globosa. For example, 2025 research highlighted its ability to reduce algal content (chlorophyll a by 50.5% and by 55.1%) and (F<sub>v</sub>/F<sub>m</sub> by 50%) at 250 μg/mL, offering a targeted approach to mitigate bloom impacts on without broad-spectrum environmental disruption. As a pharmaceutical precursor, cycloheximide plays a role in the synthesis of structural analogs designed to retain its protein synthesis inhibitory properties for potential therapeutics, while addressing limitations like mammalian . Synthetic routes have enabled the production of modified congeners with altered structure-activity relationships, focusing on enhanced specificity to eukaryotic targets for . These efforts prioritize analogs that could serve as less toxic alternatives in formulations, drawing on cycloheximide's core glutarimide scaffold. In veterinary applications, cycloheximide finds occasional use in treatments for , particularly against infections in dogs and cats, administered at controlled dosages to exploit its inhibitory effects on fungal protein synthesis. Such formulations are applied sparingly to localized conditions, with veterinary guidelines emphasizing precise application to minimize systemic exposure.

Toxicity and Safety

Human and Environmental Toxicity

Cycloheximide exerts toxicity in humans primarily through its inhibition of eukaryotic protein synthesis, which disrupts cellular functions and leads to severe adverse effects. Acute exposure, particularly via , can cause gastrointestinal distress including excessive salivation, , , , and , as observed in animal models and extrapolated to risk profiles. The compound is highly toxic, with an oral LD50 in rats of approximately 2 mg/kg, indicating a probable in humans of 5-50 mg/kg. Reproductive and developmental toxicity is a major concern, with cycloheximide classified as a teratogen capable of inducing birth defects such as and in exposed embryos. It may also damage and cause toxicity to male germ cells, contributing to its status as a developmental toxicant. In , it is listed under Proposition 65 as known to cause birth defects or other reproductive harm. Potential carcinogenicity has been noted in limited studies, though it is not a well-established , with reports of tumor development in animal models following exposure. In research settings, cycloheximide exposure can induce DNA damage and trigger apoptosis in eukaryotic cells, highlighting its hazardous nature even at controlled doses. Due to this high toxicity and narrow therapeutic window, it is unsuitable for clinical therapeutic applications and is restricted to laboratory use. Environmentally, cycloheximide poses risks to aquatic ecosystems, where it is toxic to eukaryotes such as fish and algae at concentrations around 1.6 mg/L (LC50 for fish) and 2.2 mg/L (EC50 for algae), with potential for long-lasting adverse effects. Safety assessments indicate it is hazardous to aquatic life over chronic exposure periods, potentially disrupting eukaryotic organisms in contaminated water bodies. While specific soil persistence data are limited, its mobility in soil suggests potential leaching into waterways from agricultural or research runoff, exacerbating aquatic toxicity.

Regulatory Status

In the United States, cycloheximide is designated as an extremely hazardous substance (EHS) under 302 of the and Community Right-to-Know Act (EPCRA), administered by the Environmental Protection Agency (EPA). Facilities that store, handle, or process cycloheximide in quantities at or above its threshold planning quantity (TPQ) of 100 pounds must develop and submit emergency planning documents, including chemical inventory reports and plans, to local emergency planning committees and the state emergency response commission. In the , cycloheximide is subject to the Classification, Labelling and Packaging (CLP) Regulation (EC) No 1272/2008, with harmonized classifications including acute toxicity category 2, reproductive toxicity category 1B, mutagenicity category 2, serious eye irritation category 2, and aquatic category 2, necessitating appropriate labeling and safety data sheets for handlers. It is exempt from full registration under Regulation (EC) No 1907/2006 due to annual production volumes below 1 tonne, but notifications are required for substances of very high concern, and general restrictions apply to prevent environmental release through proper and disposal protocols. Furthermore, cycloheximide is not approved for use as a plant protection product in any EU member state under Regulation (EC) No 1107/2009, effectively prohibiting its agricultural application due to its toxicity profile. Occupational safety standards for cycloheximide in laboratory and industrial settings are governed by the (OSHA) under the Hazard Communication Standard (29 CFR 1910.1200), requiring employers to provide safety data sheets, training, and (PPE) such as chemical-resistant gloves, protective clothing, safety goggles, and respiratory protection if airborne concentrations exceed permissible exposure limits or in poorly ventilated areas. Handling must occur in fume hoods to minimize risks, and spill response protocols involve evacuation, with absorbent materials, neutralization if applicable, and proper to avoid skin contact or environmental contamination, in line with OSHA's general guidelines (29 CFR 1910.1450). The International Agency for Research on Cancer (IARC) has not classified cycloheximide as a , though it remains under monitoring for potential mutagenic and reproductive effects in occupational exposure assessments. Regarding international trade, cycloheximide is not controlled under the as a scheduled chemical, but as a , its import and export are restricted in certain countries. In some nations, export of antibiotics like cycloheximide may face additional scrutiny or licensing requirements if classified as dual-use items or precursors for non-research purposes, though no global convention specifically targets it for such controls.

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