Fact-checked by Grok 2 weeks ago

Olfactory receptor

Olfactory receptors (ORs) are a large family of G protein-coupled receptors (GPCRs) primarily expressed in the cilia of olfactory sensory neurons within the olfactory epithelium of the nasal cavity, where they detect and bind volatile odorant molecules to initiate the mammalian sense of smell.^[1] These receptors, classified under the rhodopsin-like family of GPCRs, feature a characteristic seven-transmembrane helical structure with conserved motifs such as the GN dipeptide in transmembrane helix 1 and the DRY motif in helix 3, enabling them to recognize a vast array of odorants through diverse ligand-binding pockets.^[1] In humans, the OR gene family comprises approximately 400 functional genes, representing the largest multigene family in the genome and encoding receptors that utilize a combinatorial coding strategy to discriminate thousands of distinct odors.^[2]^[3] Upon odorant binding, ORs undergo a conformational change that activates heterotrimeric G proteins—specifically G_olf in olfactory neurons—leading to stimulation of adenylyl cyclase, increased intracellular cyclic AMP (cAMP) levels, and opening of cyclic nucleotide-gated (CNG) ion channels, which depolarize the neuron and generate action potentials transmitted via the olfactory nerve to the brain's olfactory bulb.^[4] This signaling pathway allows for the transduction of chemical stimuli into electrical signals, with each olfactory sensory neuron typically expressing only one OR type, ensuring precise odor mapping through convergence onto glomeruli in the olfactory bulb.^[4] Beyond their canonical role in olfaction, ORs exhibit ectopic expression in non-chemosensory tissues such as the testis and prostate, where they may contribute to functions like sperm chemotaxis or cellular regulation, though these roles remain under investigation.^[5] Evolutionarily, the OR family has expanded and diversified across vertebrates, with humans showing a reduced repertoire compared to rodents (over 1,000 functional genes in mice), reflecting adaptations to different ecological pressures.^[5]

Overview and Structure

Definition and Role

Olfactory receptors are specialized G-protein coupled receptors (GPCRs) expressed on the surface of olfactory sensory neurons (OSNs) within the olfactory epithelium of the nasal cavity.^[6] These receptors, first identified in 1991, function as the primary detectors of volatile chemical compounds known as odorants. As members of the rhodopsin-like family of GPCRs, they possess seven transmembrane domains that enable interaction with extracellular ligands.^[5] The core biological role of olfactory receptors is to bind odorant molecules, thereby initiating sensory transduction that converts chemical signals into electrical impulses for smell perception.^[7] This binding event activates intracellular signaling pathways within the OSN, leading to depolarization and the generation of action potentials that propagate along the neuron's axon.^[4] These neural signals are then relayed to the olfactory bulb, the first central relay station in the brain, where they contribute to odor identification and discrimination.^[8] Olfactory receptors form the largest multigene family in vertebrates, comprising hundreds to over a thousand genes that encode a diverse array of receptor proteins capable of recognizing thousands of distinct odors.^[9] This extensive genetic repertoire underpins the olfactory system's remarkable sensitivity and specificity, allowing organisms to detect subtle environmental cues essential for survival, such as food sources, predators, and social signals.^[10]

Molecular Architecture

Olfactory receptors (ORs) belong to the class A family of G protein-coupled receptors (GPCRs), characterized by a canonical seven-transmembrane domain (7TM) architecture that spans the plasma membrane. This structure consists of seven alpha-helical segments (TM1–TM7) connected by three intracellular loops (ICL1–ICL3) and three extracellular loops (ECL1–ECL3), forming a compact bundle that creates an orthosteric binding pocket for odorants. The 7TM core is highly conserved among GPCRs, enabling signal transduction from odorant binding to intracellular responses via heterotrimeric G proteins, though ORs exhibit unique motifs in their transmembrane helices that distinguish them from other class A members. The N-terminal domain of ORs is extracellular and relatively short, typically featuring potential glycosylation sites that facilitate odorant access to the binding pocket through interactions with the extracellular loops, particularly ECL2, which contributes to ligand selectivity. In contrast, the C-terminal domain is intracellular and extends into the cytoplasm, serving as a key interface for coupling to G proteins such as Gαolf, with conserved residues in ICL2 and the C-terminus mediating effector recruitment and downstream signaling. These terminal domains underscore the receptor's role in bridging extracellular odor detection with intracellular cascades, while maintaining the overall topological conservation of GPCRs.^[11] At the genetic level, OR genes are organized with their protein-coding sequences predominantly contained within a single exon, simplifying identification and expression compared to multi-exonic GPCRs, though recent analyses have identified exceptions where the coding region is split across two exons, often with introns interrupting the N-terminal or TM1 regions. Upstream of the coding exon, promoter regions include variable 5' untranslated regions (UTRs) composed of 1–6 non-coding exons that undergo alternative splicing, enabling precise transcriptional regulation and monoallelic expression in olfactory sensory neurons. These genomic features support the vast diversity of ORs while ensuring controlled expression patterns.^[12]^[13] The ligand-binding pocket in ORs is an enclosed cavity lined by residues from TM3, TM5, TM6, and ECL2, with key interactions involving polar and hydrophobic amino acids that accommodate diverse odorants. For instance, the 2023 cryo-EM structure of human OR51E2 (PDB: 8F76), the first near-complete atomic model of an OR in its active state bound to propionate, reveals critical residues such as Arg262^{6.59}, Ser258^{6.55}, and His104^{3.33} forming hydrogen bonds and van der Waals contacts within the pocket, highlighting the receptor's specificity for short-chain fatty acids. Due to the scarcity of experimentally solved OR structures—only a handful available as of 2025—homology modeling based on related GPCRs like rhodopsin or β2-adrenergic receptors has been extensively employed to predict architectures and binding sites, despite challenges posed by sequence divergence and loop flexibility.^[11]^[14]

Expression Patterns

Primary Expression in Olfactory Epithelium

Olfactory receptors (ORs) are primarily expressed in the olfactory epithelium, a pseudostratified neuroepithelium lining the dorsal region of the nasal cavity in mammals. This tissue contains olfactory sensory neurons (OSNs), which are bipolar neurons specialized for detecting odorants. The OR proteins are localized to the ciliary membrane of these OSNs, where they form a dense meshwork exposed to the nasal mucus, enabling direct interaction with inhaled odor molecules.^[15]^[16] A defining feature of OR expression is the strict "one neuron, one receptor" rule, enforced by an allelic exclusion mechanism that ensures each mature OSN expresses only a single OR allele from its large multigene family. This singular expression pattern is achieved through a combination of stochastic choice and feedback inhibition, where initial low-level transcription of an OR gene triggers epigenetic silencing of all other OR alleles via mechanisms involving DNA methylation and histone modifications. As a result, OSNs are highly specialized, with each type tuned to a specific subset of odorants, contributing to the olfactory system's discriminatory power.^[17] Within the olfactory epithelium, OR expression exhibits a zonal organization, where OSNs expressing related ORs are clustered into four broad zones along the dorsoventral axis of the nasal cavity. This spatial segregation correlates with ligand specificity, such that receptors sensitive to similar odorants are co-expressed in the same zone, facilitating patterned axonal projections to the olfactory bulb. For instance, certain class I ORs predominate in the dorsal zone, while class II ORs are more ventrally distributed, reflecting evolutionary and functional adaptations in odor detection.^[18] The olfactory epithelium maintains its sensory function through continuous regeneration, as mature OSNs have a limited lifespan of approximately 30-60 days due to environmental exposure and apoptosis. New OSNs arise from basal stem cells, including globose basal cells that primarily support homeostatic turnover and horizontal basal cells that activate during injury-induced regeneration. Supporting cells, or sustentacular cells, play a crucial role in this process by providing structural support, secreting regulatory factors, and insulating OSNs, thereby creating a niche that sustains progenitor proliferation and differentiation while preserving OR expression fidelity.^[19]^[20]

Ectopic and Non-Olfactory Expression

Olfactory receptors (ORs) are expressed ectopically in a wide array of non-olfactory tissues in humans, with transcriptomic analyses indicating that approximately 50% of the approximately 850 OR genes show such expression patterns across dozens of tissues, including the atrioventricular node, skin, uterus, thyroid, and salivary gland.^[21] This ectopic expression has been documented through expressed sequence tag (EST) data and microarray studies, revealing tissue-specific subsets of ORs rather than uniform distribution, with no strong correlation to olfactory epithelium expression levels.^[21] In humans, comprehensive profiling across over 45 tissues confirms broad but low-level expression of intact OR genes outside the nose, often at levels significantly lower than in sensory epithelia.^[22] Notable examples include expression in the airway epithelium, such as pulmonary neuroendocrine cells and tracheobronchial epithelial cells, where ORs like MOR2.3 are detected in alveoli and may influence local responses to environmental cues.^[16] In the prostate, ORs such as OR51E2 (also known as PSGR) are prominently expressed in epithelial cells, particularly in the luminal layer, with elevated levels in prostate intraepithelial neoplasia and tumors.^[23] Cardiac tissues, including cardiomyocytes and the aorta, also host OR expression, exemplified by OR51E1 and OL1, which contribute to tissue morphogenesis and vascular regulation.^[16] These patterns extend to other sites like the testis, lung, intestine, kidney, and blood, underscoring the ubiquity of ORs beyond olfaction.^[22] Beyond mere presence, ectopic ORs mediate diverse physiological roles, including sperm chemotaxis, where receptors like OR1D2 detect bourgeonal to enhance motility and Ca²⁺ signaling in spermatozoa, guiding them toward the ovum.^[22] In immune modulation, OR51E2 functions as a tumor antigen in blood cells, potentially influencing leukocyte activity and responses in the spleen.^[22] For cancer detection and progression, OR51E2 and OR51E1 serve as biomarkers in prostate cancer, with activation by ligands like β-ionone inhibiting cell proliferation via MAPK pathways (p38 and JNK) and reducing growth by up to 50% in models like LNCaP cells.^[24] Metabolic regulation involves OR51E1 in the heart, where it modulates cardiac contractility, and OR2J3 in prostate cells, linked to serotonin-mediated processes that affect apoptosis and proliferation upon odorant stimulation like helional.^[22] Verifying these non-olfactory functions remains challenging due to generally low expression levels in ectopic sites, which often necessitate sensitive PCR amplification for detection, and the similarity among ORs that complicates antibody specificity.^[16] Approximately 10-20% of human ORs have been deorphanized—meaning their activating ligands identified—limiting confirmation of endogenous interactions, while tissue accessibility and variability in heterologous expression systems further hinder functional studies; recent advances in high-throughput deorphanization as of 2025 are addressing these gaps.^[22]^[25]^[26] Despite these obstacles, ectopic ORs hold promise as therapeutic targets, particularly in cancer and metabolic disorders, pending advances in ligand discovery and expression profiling.^[27]

Activation Mechanism

Odorant Binding and Shape Theory

Olfactory receptors, as G protein-coupled receptors (GPCRs), primarily detect odorants through a lock-and-key mechanism where hydrophobic odorant molecules bind within a transmembrane binding pocket formed by the seven helical domains.^[28] This binding is mediated by non-covalent interactions, including van der Waals forces and hydrophobic effects, which stabilize the odorant in the pocket and induce conformational changes in the receptor.^[29] The pocket's architecture, often lined with aromatic and aliphatic residues, accommodates diverse odorants while excluding water-soluble molecules, ensuring specificity for volatile, lipophilic compounds.^[28] The shape theory of olfaction posits that odor discrimination arises from the complementary fit between the odorant's molecular shape and size and the receptor's binding site, akin to enzyme-substrate interactions.^[30] Proposed by Amoore in the 1960s, this model emphasizes steric complementarity and weak intermolecular forces over chemical reactivity, explaining why structurally similar odorants activate the same receptors while enantiomers may elicit distinct perceptions.^[30] Evidence supporting this theory includes the involvement of metal ions such as zinc and copper in the binding site, where they coordinate with receptor residues to modulate ligand interactions and enhance shape-based selectivity; for instance, copper ions facilitate detection of sulfur-containing odorants by bridging the odorant and key histidine residues.^[31]^[32] Upon odorant binding, the activated receptor catalyzes GDP-GTP exchange on the olfactory-specific G protein, Golf (G olf), leading to dissociation of its α-subunit and stimulation of type III adenylyl cyclase.^[33] This elevates intracellular cyclic AMP (cAMP) levels, which directly binds and opens cyclic nucleotide-gated (CNG) channels in the ciliary membrane, permitting influx of Na⁺ and Ca²⁺ ions.^[34] The resulting depolarization of the olfactory sensory neuron initiates action potentials that propagate to the olfactory bulb.^[35] Signal amplification occurs at multiple stages: a single activated receptor can stimulate numerous Golf heterotrimers due to the catalytic nature of GPCR signaling, amplifying cAMP production.^[36] Additionally, Ca²⁺ entry through CNG channels activates calcium-dependent chloride channels (e.g., TMEM16B/anoctamin 2), which, due to high intracellular Cl⁻ concentration in olfactory neurons, generate an efflux of Cl⁻ that further depolarizes the cell and enhances the receptor potential.^[36] This dual-channel mechanism provides gain control, allowing detection of low-concentration odorants.^[37] Experimental validation of key binding residues has come from site-directed mutagenesis studies, which identify critical amino acids in the transmembrane helices and extracellular loops that interact with odorants.^[38] For example, mutations in transmembrane domain 3 and 6 residues, such as histidines coordinating metal ions or leucines forming the hydrophobic pocket, abolish or alter ligand responsiveness, confirming their role in shape-specific binding.^[39]^[38] These findings underscore the precision of the shape theory in olfactory signal initiation.

Vibrational Theory and Alternatives

The vibrational theory of olfaction proposes that the sense of smell detects molecular vibrations through a quantum mechanism rather than relying exclusively on the three-dimensional shape of odorant molecules. In this model, olfactory receptors act as biological spectroscopes, identifying odorants via inelastic electron tunneling (IET), where tunneling electrons couple with specific vibrational frequencies of the odorant, such as C-H stretching modes in the infrared range (around 2800–3000 cm⁻¹). This theory, initially formulated by Luca Turin, suggests that the energy loss from electron-odorant inelastic collisions excites molecular vibrations, leading to receptor activation. Supporting evidence for the vibrational theory includes behavioral experiments in fruit flies (Drosophila melanogaster), where deuterated odorants with shifted vibrational spectra (due to heavier isotopes altering bond oscillation frequencies) elicited distinct avoidance responses compared to their non-deuterated counterparts with identical shapes, indicating vibration-sensitive detection. Human psychophysical studies have also reported differentiation between isotopomers of musk compounds, such as deuterated and undeuterated versions, aligning with predicted vibrational differences rather than shape alone.^[40] Additionally, the presence of metalloproteins like copper in certain olfactory receptors may facilitate IET by providing a conductive pathway for electron transfer across the odorant-binding site, enhancing sensitivity to sulfur-containing thiols whose vibrations could be amplified in this metallic environment. A 2024 data-driven study using deep learning on vibrational spectra and odor classes further supports the theory, showing that vibrational features complement structural models in predicting odor perception.^[41] However, the theory faces significant contradictions from isotope substitution experiments at the receptor level. For instance, human olfactory receptor cells expressing specific G-protein-coupled receptors showed no differential activation between odorants and their isotopically labeled variants (e.g., acetophenone and its deuterated form), despite vibrational frequency shifts, supporting shape-based recognition over vibration detection.^[42] In human perceptual tests, heavy water (D₂O) and regular water (H₂O) exhibit no distinguishable odor difference attributable to vibration, as any perceived variance aligns with molecular shape and impurities rather than isotopic vibrational changes.^[42] Criticisms of the vibrational theory center on its biophysical feasibility, particularly the maintenance of quantum coherence required for IET at physiological temperatures (around 37°C in mammals), where thermal noise would likely decohere vibrational states within femtoseconds, rendering detection improbable without specialized isolation mechanisms.^[43] Experimental inconsistencies, such as failures to replicate isotope effects in controlled receptor assays, further undermine the model, leading to an ongoing debate without scientific consensus.^[43] Alternative models include hybrid approaches that integrate vibrational detection with traditional shape recognition, positing that both mechanisms contribute to odor coding in a complementary fashion.^[43] Another prominent alternative emphasizes combinatorial activation, where individual olfactory receptors bind multiple odorants via shape complementarity, and the overall smell emerges from the pattern of activated receptors across the ensemble, independent of vibrational cues.^[43]

Genetic Diversity

Gene Repertoire and Pseudogenes

In the human genome, the olfactory receptor (OR) gene repertoire consists of 390 functional genes and 484 pseudogenes, resulting in a total of 874 OR loci.^[9] These genes encode G protein-coupled receptors that detect odorants, while pseudogenes represent non-functional copies disabled primarily by inactivating mutations such as frameshift indels, premature stop codons, or deletions that disrupt the open reading frame.^[44] Pseudogenes often cluster alongside functional OR genes in gene-poor genomic regions, reflecting the dynamic duplication and decay processes that have shaped this superfamily.^[45] OR genes are organized into tandem arrays distributed across nearly all human chromosomes except 20 and Y, with prominent clusters on chromosomes 1, 6, and 11 that can span hundreds of kilobases and contain dozens of genes each.^[2] In comparison, the mouse genome exhibits a larger functional repertoire of about 1,035 OR genes and fewer pseudogenes (around 350), underscoring the rodent's superior olfactory discrimination capabilities relative to humans.^[46] Genetic variation within the OR repertoire contributes to inter-individual differences in odor perception; for instance, polymorphisms in the OR7D4 gene are associated with specific anosmia to androstenone, a steroidal odorant, where certain alleles impair receptor function and lead to perceptual blindness in affected individuals. Recent advances in long-read sequencing technologies have enabled more precise assembly of these repetitive tandem arrays, potentially refining earlier estimates of functional gene and pseudogene counts by resolving structural variants previously missed in short-read assemblies.^[13]

Receptor Families and Classification

Olfactory receptor genes and proteins are systematically named using a standardized nomenclature approved by the HUGO Gene Nomenclature Committee. The root symbol "OR" is followed by an Arabic numeral denoting the family (ranging from 1 to 56 in humans), a capital letter (A–Z) indicating the subfamily, and another Arabic numeral specifying the individual gene or protein within the subfamily; for example, OR2J3 refers to the third member of subfamily J in family 2.^[47]^[48] These receptors are grouped into families and subfamilies primarily based on sequence similarity, with families defined by at least 40% amino acid identity between members and subfamilies by higher thresholds, typically exceeding 60% identity.^[49] In humans, the olfactory receptor repertoire encompasses approximately 874 loci, including both functional genes and pseudogenes, organized into 18 major families and over 300 subfamilies across vertebrates, though the human set is more contracted.^[9]^[48] The primary classification divides olfactory receptors into two classes: class I and class II. Class I receptors, often termed "fish-like," correspond to families OR51 through OR56 and resemble those found in aquatic vertebrates; they constitute a smaller portion of the human repertoire, with around 55 identified members including pseudogenes.^[47]^[50] Class II receptors, specific to tetrapods, span families OR1 through OR14 (and additional higher-numbered families) and form the majority, with approximately 800 loci in humans; these exhibit greater expansion and diversity compared to class I.^[47]^[48] This dichotomy reflects structural and phylogenetic distinctions, with class I generally associated with detection of more hydrophilic odorants and class II with hydrophobic ones.^[51] A related but distinct family is the trace amine-associated receptors (TAARs), which also function as olfactory receptors and share G protein-coupled receptor architecture with ORs, though they form a separate phylogenetic clade. In humans, there are 6 functional TAAR genes (TAAR1, TAAR2, TAAR5, TAAR6, TAAR8, TAAR9) alongside 3 pseudogenes, clustered genomically and specialized for detecting volatile amines.^[52]^[53] Annotation and classification of these receptors are facilitated by specialized databases such as Ensembl, which integrates expert-curated genomic data including Havana manual annotations for human and mouse ORs, and HORDE (Human Olfactory Receptor Data Explorer), a comprehensive resource cataloging the full human OR subgenome with details on families, subfamilies, orthologs, and variants.^[9]^[54]

Evolutionary Dynamics

Gene Family Expansion and Contraction

The olfactory receptor (OR) gene family undergoes evolution primarily through a birth-and-death process, in which gene duplications generate redundant copies that can either diverge to acquire new functions via subsequent mutations or degenerate into pseudogenes through inactivating changes.^[55] This stochastic model accounts for the variability in OR repertoire sizes across vertebrates, balancing innovation in odor detection with the loss of obsolete genes.^[56] Tandem duplications serve as the dominant mechanism driving this process, frequently resulting in the formation of large genomic clusters of OR genes on multiple chromosomes, which facilitate rapid proliferation and localized evolutionary tinkering.^[57] A notable expansion of the OR gene family occurred in early vertebrates, coinciding with the evolutionary shift toward enhanced olfaction to detect diverse environmental cues, such as during the transition to terrestrial habitats.^[58] Conversely, contractions in OR gene numbers have been prominent in primate lineages, driven by reduced selective pressure on olfaction amid greater dependence on visual processing for survival and navigation.^[59] Positive selection often targets amino acid residues in the ligand-binding sites of OR proteins, enabling adaptation to ecologically relevant odorants.^[60] Pseudogene accumulation further shapes these dynamics, with humans showing a high rate of approximately 60% pseudogenized OR genes compared to about 20% in mice, a disparity attributed to differing lifestyles and sensory priorities between these species.^[61]

Comparative Aspects Across Species

Olfactory receptors in fish primarily consist of class I genes, with teleost species possessing approximately 100 such genes adapted for detecting water-soluble odorants in aquatic environments.^[62] These receptors enable sensitivity to amino acids and other hydrophilic molecules essential for navigation, foraging, and predator avoidance in water.^[63] In contrast, mammalian olfactory receptor repertoires show significant variation, peaking in rodents with over 1,000 functional genes that support acute terrestrial olfaction for detecting volatile compounds.^[44] Humans and Old World primates, however, exhibit a marked reduction to around 400 functional genes, reflecting diminished reliance on olfaction compared to visual cues.^[44] Certain mammals display lineage-specific expansions tailored to ecological niches. African elephants, for instance, possess an exceptionally large repertoire of approximately 2,000 functional olfactory receptor genes, clustered in expanded genomic regions that enhance detection of distant pheromones and food sources in their savanna habitat.^[64] Among cetaceans, adaptations differ by lineage: baleen whales maintain olfactory capabilities through conserved receptor genes under selective pressure, with expansions in specific OR families specialized for detecting prey in marine environments, despite overall repertoire contraction.^[65] In contrast, toothed whales have lost nearly all functional OR genes and lack olfaction.^[66] These adaptations highlight how olfactory gene expansions or contractions align with sensory priorities in specific environments. In insects, olfactory receptors form a distinct molecular class unrelated to vertebrate G protein-coupled receptors, functioning as heteromeric ion channels comprising tuning receptors and the obligate co-receptor Orco.^[67] Gene numbers vary widely, typically ranging from 60 in Drosophila to over 200 in species like ants or moths, enabling diverse volatile detection for mating, foraging, and host location.^[68] Despite these mechanistic differences, convergent evolution has produced comparable receptor diversity across vertebrates and invertebrates, allowing similar perceptual acuity for chemical cues in air or water.^[69] The reduction in human olfactory receptor genes coincides with the evolutionary acquisition of full trichromatic vision in primates, suggesting a trade-off where enhanced color discrimination supplanted olfaction for environmental interpretation.^[70] This human-specific loss underscores broader adaptive shifts, where sensory modalities evolve in concert with ecological demands across species.^[70]

Discovery and Advances

Initial Identification

The initial identification of olfactory receptor (OR) genes occurred in 1991, when Linda Buck and Richard Axel cloned the first members of this gene family in rats by screening for sequences homologous to the G-protein-coupled receptor (GPCR) superfamily.^[71] Their approach relied on degenerate polymerase chain reaction (PCR) amplification using primers designed from conserved transmembrane domains of known GPCRs, applied to cDNA libraries derived from rat olfactory epithelium.^[71] This strategy enriched for novel transcripts specifically expressed in olfactory tissue, leading to the isolation of 18 distinct OR gene sequences that shared structural features with GPCRs, including seven transmembrane domains.^[71] The discovery revealed ORs as an exceptionally large multigene family, with estimates suggesting approximately 1,000 members in the rat genome, far exceeding other known gene families at the time. In the ensuing years of the 1990s, researchers mapped these genes to specific chromosomal clusters, identifying large arrays on multiple chromosomes; for instance, in humans, OR gene clusters were localized to chromosome 17 in 1994 and chromosome 11 in 1998 using similar PCR-based and fluorescence in situ hybridization techniques. Concurrently, studies recognized a high proportion of OR sequences as pseudogenes—nonfunctional copies with disruptive mutations—particularly in humans, where analyses of sampled genes indicated about 72% were pseudogenized, reflecting evolutionary decay in this rapidly evolving family. Early investigations faced significant challenges due to the low expression levels of OR genes, which are sparsely transcribed in the olfactory epithelium with each neuron typically expressing only one receptor allele, complicating detection and functional validation through techniques like in situ hybridization and Northern blotting.^[6] This sparsity, combined with the family's size and sequence diversity, hindered comprehensive cloning and expression studies throughout the decade.^[6]

Structural and Functional Milestones

The discovery of olfactory receptors (ORs) and the organization of the olfactory system earned Linda B. Buck and Richard Axel the 2004 Nobel Prize in Physiology or Medicine, recognizing their foundational work in identifying the large gene family encoding these G protein-coupled receptors and elucidating how they enable odor discrimination. In the 2010s, advances in high-throughput screening techniques, including heterologous expression systems and luciferase-based assays, facilitated the deorphanization of numerous ORs by identifying specific ligands, with approximately 10-20% of the roughly 400 functional human ORs paired with known odorants or agonists by the mid-decade.^[72]^[73] These efforts, often involving screening hundreds of ORs against diverse chemical libraries, revealed broad tuning profiles for many receptors and highlighted the combinatorial coding underlying odor perception.^[74] A landmark structural milestone came in 2023 with the cryo-electron microscopy (cryo-EM) determination of the active human OR51E2 bound to its ligand propionate at 3.2 Å resolution, providing the first atomic-level view of an OR-ligand complex and revealing how the odorant binds in a deep orthosteric pocket, inducing conformational changes in transmembrane helices 3, 5, 6, and 7 to activate G protein signaling. This structure illuminated conserved activation mechanisms across class A GPCRs while underscoring OR-specific adaptations, such as a spacious binding cavity accommodating varied aliphatic chains.^[75] Functional studies employing optogenetics and calcium imaging have further validated the "one receptor per neuron" principle, demonstrating that individual olfactory sensory neurons express a single OR type, with targeted light activation of channelrhodopsin-2 in specific OR-expressing neurons eliciting precise, ligand-mimetic responses in downstream circuits.^[76] Complementary calcium imaging in vivo has confirmed this singular expression by showing odorant-evoked calcium transients confined to neurons bearing one OR allele, reinforcing the stochastic yet exclusive selection process that ensures dedicated neural wiring to the olfactory bulb.^[77] Ongoing research leverages AI-driven models for ligand prediction, such as deep neural networks that screen vast chemical spaces to forecast OR-odorant interactions and deorphanize remaining receptors with high accuracy. As of 2025, approximately 20% of human ORs have been deorphanized.^[78] These computational tools hold therapeutic promise, potentially aiding treatments for anosmia by identifying agonists to stimulate dysfunctional ORs and targeting ectopic OR expression in cancers, where overexpressed receptors like OR2J3 in lung tumors could be modulated with odorant-based inhibitors to disrupt proliferation.^[79]

References

[1]
Structure–Function Relationships of Olfactory and Taste Receptors
Jan 12, 2018 · This review discusses the first steps on this pathway, including biochemical and physiological assays, forward genetics approaches, molecular modeling,Missing: definition | Show results with:definition
[2]
The human olfactory receptor gene family - PMC - NIH
We analyzed the human OR gene family. By searching the human genome database, we identified 339 intact OR genes and 297 OR pseudogenes.Missing: GPCR | Show results with:GPCR
[3]
Genetic variation across the human olfactory receptor ... - PNAS
Apr 30, 2019 · Humans have approximately 400 OR genes that are intact in at least part of the population, but individuals have different repertoires of ...
[4]
Physiology, Olfactory - StatPearls - NCBI Bookshelf
Glomeruli are found on the surface of the olfactory bulb and are critical structures for transducing olfaction. Each glomerulus receives converging axons from ...
[5]
Olfactory receptors: GPCRs and beyond - PMC - NIH
In this review, we will consider the rapidly expanding repertoire of chemosensory receptor families employed by vertebrate and insect olfactory systems. In ...
[6]
Odorant Receptors - The Neurobiology of Olfaction - NCBI Bookshelf
The receptors responsible for odorant discrimination were first cloned in 1991 by Linda Buck and Richard Axel (Buck and Axel 1991).
[7]
The Transduction of Olfactory Signals - Neuroscience - NCBI - NIH
Odorant transduction begins with odorant binding to specific receptors on the external surface of cilia. Binding may occur directly, or by way of proteins in ...
[8]
Odorant Receptors and Olfactory Coding - Neuroscience - NCBI - NIH
In short, individual odorants can activate multiple receptors, and individual receptors can be activated by multiple odorants. Like other sensory receptor cells ...
[9]
Olfactory receptor multigene family in vertebrates - PubMed
There are ~400 and ~1,000 OR genes in the human and mouse genomes, respectively, forming the largest multigene family in mammals.
[10]
Structural basis of odorant recognition by a human odorant receptor
Mar 15, 2023 · Using cryo-electron microscopy, we determined the structure of the active human odorant receptor OR51E2 bound to the fatty acid propionate.
[11]
The sense of smell: genomics of vertebrate odorant receptors
The coding region is contained within a single exon (simplifying experimental and computational gene identification), but exons in the 5′ untranslated region ...
[12]
Expert curation of the human and mouse olfactory receptor gene ...
Our findings challenge the long-standing and widespread notion that the coding region of a vertebrate OR gene is contained within a single exon. Conclusions.
[13]
Computational modelling of olfactory receptors - ScienceDirect.com
This review provides a comprehensive overview of computational approaches used in OR research, including homology modelling, molecular docking, molecular ...
[14]
A genetic platform for functionally profiling odorant receptors in ...
Aug 9, 2022 · Here, we describe an approach using cilia isolated from the olfactory sensory neurons of mice expressing two human ORs, OR1A1 and OR5AN1, that ...
[15]
Olfactory receptors in non-chemosensory tissues - PMC - NIH
Olfactory receptors (ORs) detect volatile chemicals that lead to the initial perception of smell in the brain. The olfactory receptor (OR) is the first ...Introduction · Ectopic Olfactory Receptor... · Testis<|control11|><|separator|>
[16]
Long-term survival of olfactory sensory neurons after target depletion
Sensory neurons of the adult olfactory epithelium (OE) normally undergo continuous turnover throughout life. Most have an average lifespan of only 30-60 days ...
[17]
Widespread ectopic expression of olfactory receptor genes
May 22, 2006 · Ectopic OR gene expression was noticeable in a large diversity of non-olfactory tissues. We noted that in every tissue a group of ORs showed ...
[18]
Human Olfactory Receptors: Novel Cellular Functions Outside of the ...
Jun 13, 2018 · Olfactory receptors (ORs) detect volatile chemicals that are common odorants in the environment. In 1991, Linda Buck and Richard Axel (21) ...
[19]
The diversified function and potential therapy of ectopic olfactory ...
This review focuses on the latest research results about the diversified function and therapeutic potential of ectopic ORs in non-olfactory tissues.
[20]
Understanding the molecular mechanisms of odorant binding and ...
Dec 7, 2023 · The recent structure of OR51E2 bound to propionate provided molecular insight into odorant recognition, but the lack of an inactive OR structure ...
[21]
Deciphering olfactory receptor binding mechanisms: a structural and ...
Jan 8, 2025 · We aim to provide a thorough analysis of research related to the binding mechanisms between odor molecules and olfactory receptors.Missing: definition | Show results with:definition
[22]
The Stereochemical Theory of Odor | Scientific American
Seven primary odors are distinguished, each of them by an appropriately shaped receptor at the olfactory nerve endings. By John E. Amoore, James W. Johnston ...
[23]
Crucial role of copper in detection of metal-coordinating odorants
Odorant receptors (ORs) mediating odor perception have been suggested to function as metalloproteins, whereby transition metal ions (e.g., Zn2+, Ni2+, Cu2+, and ...
[24]
Is the olfactory receptor a metalloprotein? - PMC - NIH
In this paper, we will describe a hypothesis in which metal ions play an important role for odorant recognition.
[25]
Identification of Second Messenger Mediating Signal Transduction ...
Oct 27, 2003 · In the cAMP pathway, odorant binding to the receptor protein triggers an activation of G-protein (Golf), and in turn activates adenylyl cyclase ...
[26]
The signal-transduction pathways of the peripheral olfactory organ ...
The binding of cAMP to the CNG channel leads to the channel opening, which causes an influx of Ca2+ and to a lesser extent, Na+, into the neuron (Leinders- ...
[27]
Chapter 8Signal Transduction in Vertebrate Olfactory Cilia
Cyclic nucleotide-gated (CNG) channels located in the ciliary membrane are directly activated by cytoplasmic cAMP, causing a depolarizing influx of Na+ and Ca+ ...<|control11|><|separator|>
[28]
Molecular components of signal amplification in olfactory sensory cilia
They accumulate chloride ions at rest and discharge a chloride current upon odor detection. This chloride current amplifies the receptor potential and promotes ...Missing: multiple | Show results with:multiple
[29]
Calcium-activated chloride channels clamp odor-evoked spike ...
Jul 13, 2018 · Tracking of unfamiliar odors is facilitated by signal amplification through anoctamin 2 chloride channels in mouse olfactory receptor neurons.
[30]
Responsiveness of G protein-coupled odorant receptors is ... - PNAS
Using site-directed mutagenesis and computational modeling, we studied ORs sharing high sequence homology but with different response properties. When tested in ...
[31]
Interactions among key residues regulate mammalian odorant ...
We found that the transmembrane domain 4 (TM4) and its interactions with neighbor residues are important for OR functional expression.
[32]
Molecular Vibration-Sensing Component in Human Olfaction
Jan 25, 2013 · Whether olfaction recognizes odorants by their shape, their molecular vibrations, or both remains an open and controversial question.Missing: fly | Show results with:fly
[33]
Implausibility of the vibrational theory of olfaction - PNAS
The vibrational theory of olfaction posits detection of odorants through their vibrational frequencies rather than solely through “hand-in-glove” ...Missing: fruit | Show results with:fruit
[34]
Status of the Vibrational Theory of Olfaction - Frontiers
At present, the most accepted theory by which olfaction operates is based on the electrostatics and van der Waals surface of the odorant permitting binding to ...
[35]
Update on the olfactory receptor (OR) gene superfamily - PMC
The olfactory receptor gene (OR) superfamily is the largest in the human genome. The superfamily contains 390 putatively functional genes and 465 pseudogenes.
[36]
Evolutionary dynamics of olfactory and other chemosensory receptor ...
The numbers of functional olfactory receptor (OR) genes in humans and mice are about 400 and 1,000 respectively. In both humans and mice, these genes exist as ...
[37]
Extensive Copy-Number Variation of the Human Olfactory Receptor ...
Like ORs, V1Rs also have a clustered genomic arrangement and are often found in SD regions. Unlike ORs, the V1R family consists almost entirely of pseudogenes ...
[38]
Evolutionary changes of the number of olfactory receptor genes in ...
Previously we have reported that humans have 388 functional OR genes and 414 pseudogenes, while mice have 1037 functional genes and 354 pseudogenes.
[39]
Olfactory receptors | HUGO Gene Nomenclature Committee
### Summary of Olfactory Receptor Gene Families
[40]
A unified nomenclature for vertebrate olfactory receptors - PMC - NIH
Apr 15, 2020 · The human nomenclature is based on a sequence similarity classification of the OR repertoire into 18 families and > 300 subfamilies, where ...
[41]
The olfactory receptor gene superfamily: data mining, classification ...
The nomenclature consists of the root symbol `OR', followed by a family numeral, subfamily letter(s), and a numeral representing the individual gene within the ...
[42]
Expert curation of the human and mouse olfactory receptor gene ...
Mar 3, 2020 · Olfactory receptor (OR) genes are the largest multi-gene family in the mammalian genome, with 874 in human and 1483 loci in mouse (including ...Missing: GPCR | Show results with:GPCR
[43]
A systematic review of the structure and function of human olfactory ...
(2023) successfully determined the structure of the human ectopic OR OR51E2 in complex with propionate using cryo-electron microscopy (Cryo-EM), de March et al.
[44]
A class I odorant receptor enhancer shares a functional motif with ...
Jan 12, 2021 · Class I ORs resemble the OR family first identified in fish and frogs, whereas class II ORs are specific to terrestrial animals. It has been ...
[45]
Olfactory function in the trace amine-associated receptor family ...
Apr 8, 2021 · Olfactory functionality has arisen twice independently within the TAAR family, once in jawed and once in jawless fish.
[46]
Olfactory signaling via trace amine-associated receptors - PubMed
Nov 25, 2020 · Trace amine-associated receptors (TAARs) are a family of G protein-coupled receptors that function as odorant receptors in the main olfactory system of ...
[47]
HORDE Home
HORDE (The Human Olfactory Data Explorer) is a database of human Olfactory Receptors (ORs), the largest multigene family in vertabrates.Missing: HORDB | Show results with:HORDB
[48]
Evolution of olfactory receptor genes in the human genome - PNAS
Sep 24, 2003 · Olfactory receptor (OR) genes form the largest known multigene family in the human genome. To obtain some insight into their evolutionary ...
[49]
The Birth and Death of Olfactory Receptor Gene Families ... - PubMed
Jun 1, 2018 · This study demonstrates the utility of species-specific duplications in elucidating gene family evolution, revealing how the OR repertoire ...
[50]
Different evolutionary processes shaped the mouse and human ...
In the human genome, tandem events are also the major force, with 484 (73%) of 665 full-length genes related most closely to another gene in the same cluster.
[51]
Evolution of vertebrate olfactory receptor repertoires and their function
Regulation of expression of olfactory receptor genes. ORs are the largest gene family in many species and occur in clusters that are distributed over many ...
[52]
Evolution of Olfactory Receptor Genes in Primates Dominated ... - NIH
The evolution of OR genes is characterized by both adaptation and genomic drift (Nei 2007; Nei et al. 2008), which made the OR gene repertoires change ...
[53]
Olfactory Receptor Subgenomes Linked with Broad Ecological ...
Jul 28, 2015 · We found rapid species-specific expansion and positive selection in OR14 (detects hydrophobic compounds) in birds and in OR51 and OR52 (detect ...
[54]
Human specific loss of olfactory receptor genes - PNAS
In humans, >60% of these are pseudogenes. In contrast, the mouse OR repertoire, although of roughly equal size, contains only ≈20% pseudogenes. We asked ...
[55]
On the Origin and Evolution of Vertebrate Olfactory Receptor Genes
Apr 30, 2009 · Among studied vertebrates, mammals have ∼1,000 olfactory receptor (OR) genes, whereas teleost fishes have much smaller (∼100) numbers of OR ...Missing: across | Show results with:across
[56]
Evolutionary dynamics of olfactory receptor genes in fishes ... - PNAS
Apr 11, 2005 · From this observation and others (22), it has been proposed that class I genes are specialized for detecting water-soluble odorants, and class ...
[57]
Extreme expansion of the olfactory receptor gene repertoire in ... - NIH
We showed that the fraction of OR pseudogenes within a genome did not correlate with the number of intact OR genes in that genome (Fig. 1B,C), indicating that ...
[58]
Conservation and selective pressures shaping baleen whale ...
Aug 19, 2024 · Conservation and selective pressures shaping baleen whale olfactory receptor genes supports their use of olfaction in the marine environment.
[59]
The structure of Orco and its impact on our understanding of olfaction
Mammalian odorant receptors comprise a large family of G protein–coupled receptors (GPCRs), numbering ∼1,100 expressed odorant receptors (ORs) in the mouse ...
[60]
Evolutionary dynamics of olfactory receptor genes in Drosophila ...
OR genes have been studied in a few insect species, and it has been reported that fruit flies (4), mosquitoes (6), and honey bees (7) have ≈60, ≈80, and ≈160 ...Missing: across | Show results with:across
[61]
Evolution of insect olfactory receptors - eLife
Mar 26, 2014 · A similar number of chemoreceptors, with about 1300 receptor genes ... Orco was the protein most similar to all three Orco candidate sequences ( ...
[62]
Loss of olfactory receptor genes coincides with the acquisition of full ...
Our findings suggest that the deterioration of the olfactory repertoire occurred concomitant with the acquisition of full trichromatic color vision in primates.
[63]
Human olfactory receptor responses to odorants | Scientific Data
Feb 3, 2015 · Of the approximately 400 intact human odorant receptors, only 10% have a published ligand. Here we used a heterologous luciferase assay to ...
[64]
The state of the art of odorant receptor deorphanization: A report ...
Apr 14, 2014 · ORs comprise nearly 50% of the ∼800 GPCRs in humans, yet ∼90% of human ORs remain orphan receptors with unknown ligands. This is surprising when ...Missing: percentage deorphanized
[65]
Deciphering olfactory receptor binding mechanisms: a structural and ...
... gene family comprising approximately 1,000 distinct genes, which give rise to a corresponding number of olfactory receptor types. Their work illuminated how ...Abstract · Introduction · Olfactory receptor... · Summary and outlook
[66]
Structural basis of odorant recognition by a human odorant receptor
Using cryogenic electron microscopy (cryo-EM), we determined the structure of active human OR51E2 bound to the fatty acid propionate. Propionate is bound within ...
[67]
Structured spike series specify gene expression patterns ... - Science
Jun 6, 2019 · We performed calcium imaging experiments and optogenetic stimulation to address how neural activity generates olfactory receptor–specific expression patterns ...
[68]
Two-Photon Calcium Imaging Reveals an Odor-Evoked Map of ...
We have developed a sensitive imaging system in the Drosophila brain that couples two-photon microscopy with the specific expression of the calcium-sensitive ...
[69]
OdoriFy: A conglomerate of artificial intelligence–driven prediction ...
OdoriFy is an open-source Web server with deep neural network–based prediction models coupled with explainable artificial intelligence functionalities.
[70]
(PDF) Olfactory receptors and human diseases - ResearchGate
Aug 6, 2025 · Olfactory training, such as aromatherapy, demonstrates significant therapeutic potential for anosmia, dementia and psychological distress.<|control11|><|separator|>
[71]
Olfactory Receptors as an Emerging Chemical Sensing Scaffold
Nov 1, 2022 · (44−48) Olfactory receptors are even overexpressed in several cancers, (49−54) including colorectal and prostate cancer, leukemia, and melanoma.