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Pyruvate kinase

Pyruvate kinase (PK; EC 2.7.1.40) is a glycolytic enzyme that catalyzes the irreversible transfer of a phosphate group from phosphoenolpyruvate (PEP) to adenosine diphosphate (ADP), yielding pyruvate and adenosine triphosphate (ATP) in the final step of glycolysis.^[1] This reaction is a key regulatory point in cellular energy metabolism, generating ATP and providing pyruvate as a substrate for the citric acid cycle, lactate production, or other biosynthetic pathways.^[2] In mammals, pyruvate kinase exists as four tissue-specific isozymes—L (liver), R (red blood cells), M1 (muscle and brain), and M2 (embryonic, proliferating cells, and tumors)—encoded by two genes, PKLR and PKM.^[3] The M1 isozyme is constitutively active and non-allosteric, while M2 exhibits allosteric regulation, allowing metabolic flexibility in response to cellular needs.^[4] Structurally, pyruvate kinase is a homotetramer with each subunit comprising three domains: the nucleotide-binding A domain (a (β/α)₈ barrel), the flexible B domain (acting as a lid over the active site), and the C-terminal domain containing allosteric effector sites.^[1] Regulation of pyruvate kinase activity is multifaceted, involving allosteric effectors such as fructose-1,6-bisphosphate (FBP), which activates the enzyme to promote glycolytic flux, and inhibitors like alanine, phenylalanine, and ATP that fine-tune metabolism based on energy status.^[1] Post-translational modifications, including phosphorylation, oxidation, and acetylation, further modulate isozyme function, particularly in cancer where PKM2 dimerization reduces activity, diverting glycolytic intermediates toward biosynthesis (the Warburg effect).^[4] Clinically, pyruvate kinase deficiency, primarily due to PKLR mutations, is the most common inherited glycolytic enzymopathy causing chronic non-spherocytic hemolytic anemia, affecting 3.2 to 8.5 per million individuals in Western populations.^[2]^[5] This leads to reduced ATP in erythrocytes, resulting in hemolysis, jaundice, and splenomegaly, with treatments including transfusions, splenectomy, or the PK activator mitapivat.^[6] Additionally, PKM2 overexpression in tumors correlates with poor prognosis in cancers like hepatocellular carcinoma, positioning it as a potential therapeutic target.^[4]

Structure and Isoforms

Isozymes in Vertebrates

In vertebrates, pyruvate kinase is expressed as four main tissue-specific isozymes: PKL (liver-type), PKR (red blood cell-type), PKM1 (muscle-type 1), and PKM2 (muscle-type 2). These isozymes are encoded by two distinct genes: the PKLR gene produces PKL and PKR through alternative promoter usage and differential splicing, while the PKM gene generates PKM1 and PKM2 via mutually exclusive alternative splicing of exons 9 and 10, respectively. This genetic arrangement allows for precise regulation of isoform expression tailored to physiological demands in different tissues.^[3]^[7]^[8] Structurally, the vertebrate pyruvate kinase isozymes are typically homotetramers, each subunit comprising three domains (A, B, and C) that form the active site for phosphoenolpyruvate (PEP) and ADP binding. The active site is conserved across isoforms and features key residues such as two arginines (Arg for phosphate binding), one lysine (Lys as the acid/base catalyst), two aspartates, and two glutamates that coordinate the substrates. Notably, PKM2 exhibits dynamic oligomerization, transitioning between an active tetrameric form and a less active dimeric form, which influences its enzymatic activity and non-metabolic functions; this transition is modulated at the C-terminal interface distinct from the active site. In contrast, PKM1 remains predominantly tetrameric, ensuring stable activity.^[1]^[9]^[10] Tissue distribution of these isozymes reflects their specialized roles in metabolism. PKL predominates in gluconeogenic tissues like the liver, kidney, and pancreas, where it supports bidirectional flux in glycolysis and gluconeogenesis, while PKR is expressed in erythrocytes, supporting unidirectional glycolysis for ATP production. PKM1 is primarily expressed in high-energy-demand tissues such as skeletal muscle, heart, and brain, favoring efficient ATP production under aerobic conditions. PKM2, on the other hand, is characteristic of embryonic tissues, tumors, and proliferating cells, including those in low-oxygen environments, where its regulation promotes biosynthetic pathways over rapid energy generation.^[11]^[12]^[13] Recent studies have uncovered unique roles for PKM1 and PKM2 in muscle myoblast differentiation, extending beyond their enzymatic functions to chromatin regulation. During myogenesis, PKM2 promotes the expression of mSWI/SNF chromatin remodeling complex subunits such as DPF2 and BAF250a, facilitating histone modifications and gene activation essential for differentiation. Meanwhile, PKM1 enhances the nuclear localization of DPF2, thereby supporting targeted chromatin remodeling and histone H3 serine 10 phosphorylation to drive myoblast fusion and maturation. These isoform-specific contributions highlight their integration of metabolism with epigenetic control in vertebrate muscle development.^[14]^[15]

Isozymes in Bacteria

In Escherichia coli, pyruvate kinase is represented by two primary isozymes, PykA and PykF, both of which function as homotetramers catalyzing the conversion of phosphoenolpyruvate (PEP) and ADP to pyruvate and ATP in the final step of glycolysis.^[16]^[17] PykA operates constitutively at low activity levels, supporting basal metabolic needs under various growth conditions, whereas PykF exhibits high activity and is inducible, becoming prominently expressed during glucose utilization to facilitate rapid glycolytic flux.^[16]^[18] Structurally, these bacterial isozymes possess simpler monomer architectures than their vertebrate counterparts, comprising three principal domains (A, B, and C) with a highly conserved active site for PEP binding but limited allosteric sites overall.^[1]^[19] In PykF, crystal structures at 2.9 Å resolution have elucidated the allosteric binding pocket for fructose-1,6-bisphosphate (FBP), which stabilizes the active conformation and enhances catalytic efficiency.^[20] PykA, in contrast, lacks this prominent allosteric site, contributing to its non-responsive nature under varying metabolite conditions.^[21] Analogous pyruvate kinase enzymes are found in other bacterial species, such as Bacillus subtilis, where the single pyk gene product shares sequence and functional homology with the E. coli isozymes, enabling similar roles in carbon metabolism and energy production.^[22]^[23] A recent advance in 2025 demonstrated that allosteric inactivation of pyruvate kinase in B. subtilis during gluconeogenesis effectively redirects metabolic flux, preventing unnecessary glycolytic activity and optimizing growth on non-fermentable carbon sources.^[24] This mechanism underscores the enzyme's adaptability in prokaryotic physiology, with PykF-like activation by FBP briefly noted as a counter-regulatory feature in glycolytic contexts.^[20]

Reaction Mechanism

Role in Glycolysis

Pyruvate kinase catalyzes the final step of glycolysis, transferring a phosphoryl group from phosphoenolpyruvate (PEP) to adenosine diphosphate (ADP) to produce pyruvate and adenosine triphosphate (ATP). The reaction is represented as:

\text{PEP} + \text{ADP} \rightarrow \text{pyruvate} + \text{ATP}

with a standard free energy change (ΔG°') of approximately -31.4 kJ/mol, rendering it highly exergonic and irreversible under physiological conditions.^[25]^[26] This step generates two ATP molecules per glucose (considering the two pyruvate molecules produced from one glucose) and supplies pyruvate as a key intermediate for entry into the tricarboxylic acid (TCA) cycle in aerobic conditions or for conversion to lactate in anaerobic fermentation.^[1] The mechanism proceeds in two distinct steps. First, the phosphoryl group from PEP is transferred to ADP, forming ATP and an enolate intermediate of pyruvate; this transfer is facilitated by coordination with divalent cations like Mg²⁺ and monovalent cations like K⁺, which stabilize the transition state.^[27]^[28] Second, the enolate is protonated—likely by a solvent-derived proton—to yield the keto form of pyruvate, completing the reaction.^[27]^[28] The enzyme's high substrate affinity for PEP (with cooperative binding in some isoforms) ensures efficient catalysis, making this step a key control point in glycolytic flux despite its near-equilibrium kinetics in vivo.^[1] Different isoforms of pyruvate kinase exhibit variations in activity that influence glycolytic efficiency. The PKM1 isoform maintains high constitutive activity in its tetrameric form, supporting rapid ATP production in energy-demanding tissues like muscle and brain.^[1] In contrast, the PKM2 isoform, prevalent in proliferating cells, shows lower activity in its dimeric form, which allows accumulation of upstream glycolytic intermediates for biosynthetic pathways rather than complete flux to pyruvate.^[1] These kinetic differences position pyruvate kinase as a rate-limiting enzyme in glycolysis, particularly under varying metabolic demands.^[1]

Role in Gluconeogenesis

The pyruvate kinase (PK) reaction, which catalyzes the transfer of a phosphate group from phosphoenolpyruvate (PEP) to ADP to form pyruvate and ATP, exhibits a highly negative standard free energy change (ΔG°' ≈ -31.4 kJ/mol), rendering it effectively irreversible under physiological conditions and preventing direct reversal in gluconeogenesis./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis)^[29] To bypass this step and synthesize glucose from non-carbohydrate precursors like pyruvate, gluconeogenesis employs an alternative two-enzyme pathway: pyruvate carboxylase first converts pyruvate to oxaloacetate in the mitochondria using biotin and ATP, followed by phosphoenolpyruvate carboxykinase (PEPCK), which decarboxylates oxaloacetate to PEP while hydrolyzing GTP.^[30] This circumvention requires an input of two high-energy phosphate bonds (one from ATP and one from GTP), which is energetically compensated later in the pathway but underscores the commitment to net ATP production in glycolysis. Although the PK reaction is thermodynamically favored forward, partial reversal has been observed in specific cellular contexts, such as high PEP concentrations coupled with low ATP levels, allowing minor reverse flux from pyruvate to PEP.^[29] However, such reverse activity remains negligible in vivo under typical metabolic conditions, as the equilibrium is strongly shifted toward pyruvate formation, and gluconeogenic tissues prioritize the bypass route to maintain flux efficiency.^[31]^[32] In vertebrate liver, the liver-specific isoform PKL (encoded by PKLR) plays a key role in supporting gluconeogenesis during fasting by undergoing inhibitory phosphorylation via protein kinase A (PKA) in response to glucagon signaling, which reduces its activity and minimizes glycolytic flux to favor PEP formation through the bypass enzymes.^[33] This isoform-specific inhibition ensures that hepatic glucose production is prioritized when blood glucose levels drop, preventing futile cycling between glycolysis and gluconeogenesis.^[34] Similarly, in bacteria, recent findings indicate that allosteric inactivation of pyruvate kinase during gluconeogenic conditions enhances flux through alternative pathways, promoting efficient glucose synthesis from pyruvate-derived precursors.^[24] Overall, the irreversibility of the PK reaction establishes a unidirectional commitment in glycolysis, directing carbon flow toward energy production in catabolic states while necessitating the energetically costlier bypass in anabolic gluconeogenesis to conserve metabolic resources and adapt to fasting or low-glucose environments.

Regulation

Allosteric Effectors

Pyruvate kinase (PK) is subject to allosteric regulation by various non-covalent effectors that bind to sites distinct from the active site, modulating its affinity for phosphoenolpyruvate (PEP) and overall catalytic efficiency across isoforms. These effectors enable fine-tuned control of glycolytic flux in response to cellular metabolic demands. The primary allosteric activator is fructose-1,6-bisphosphate (FBP), an upstream glycolytic intermediate that binds to the liver (PKL), red blood cell (PKR), and muscle (PKM2) isoforms, enhancing their affinity for PEP. Binding of FBP shifts the K_0.5 for PEP from approximately 1 mM to 0.1 mM, thereby promoting the active conformation and increasing enzymatic velocity at physiological substrate concentrations.^[35] In PKM2, FBP specifically stabilizes the tetrameric form over the less active dimeric state, with an activation concentration (AC₅₀) of about 7 μM, facilitating rapid glycolytic flux during high-energy demands.^[35] This feed-forward activation mechanism links PK activity to earlier glycolytic steps, ensuring coordinated pathway progression.^[36] Allosteric inhibitors such as ATP, alanine, and phenylalanine counteract FBP effects by binding to distinct sites, reducing maximum velocity (V_max) and elevating the K_0.5 for PEP. ATP, signaling high cellular energy status, competes at an allosteric site to inhibit PKL and PKM2, thereby slowing glycolysis when ATP levels are elevated.^[37] Alanine and phenylalanine, indicators of amino acid availability, act as feedback inhibitors; for instance, phenylalanine inhibits PKM2 with an IC₅₀ of 0.24 mM by stabilizing an inactive tetrameric conformer and promoting dimerization in nutrient-rich conditions, such as in cancer cells where dimeric PKM2 supports biosynthetic pathways.^[35] These inhibitors collectively provide negative feedback to prevent excessive glycolytic commitment when energy or amino acid pools are abundant.^[38] The FBP binding site is located entirely within the C-domain of PK, approximately 40 Å from the active site, involving key interactions such as hydrogen bonds with residues in the fructose-1,6-bisphosphate activation motif (e.g., Gly514–Thr522 loop), which transmits conformational changes across domain interfaces to enhance substrate binding. Inhibitor sites for ATP and amino acids like alanine and phenylalanine are also clustered near the C-domain interfaces, often overlapping with dimer-dimer contacts, allowing competitive antagonism of FBP effects.^[39] In bacteria, recent studies highlight allosteric inactivation of pyruvate kinase as crucial for gluconeogenesis, where effectors prevent futile cycling between glycolysis and gluconeogenesis by robustly suppressing PK activity under low-carbon, high-energy conditions. For example, in Bacillus subtilis, allosteric inhibitors at the C-domain site near the dimer interface, mediated by an extra C-terminal domain, enable efficient carbon flux toward glucose synthesis without metabolic conflicts.^[24] Overall, these allosteric effectors achieve physiological tuning by integrating upstream glycolytic signals (via FBP activation) with downstream energy and amino acid status (via ATP and amino acid inhibition), ensuring adaptive metabolic control across isoforms and organisms.^[36]

Covalent and Post-Translational Modifications

Pyruvate kinase, particularly the M2 isoform (PKM2), undergoes several covalent and post-translational modifications that dynamically regulate its enzymatic activity, stability, and subcellular localization. These modifications, including phosphorylation, acetylation, oxidation, and ubiquitination, allow PKM2 to integrate signals from growth factors, oxidative stress, and cellular proliferation states, thereby fine-tuning glycolytic flux. In contrast, the PKM1 isoform is largely resistant to such regulation due to its stable tetrameric structure. Phosphorylation of PKM2 occurs primarily at tyrosine residues in response to growth factor signaling and oncogenic stimuli. Receptor tyrosine kinases, such as fibroblast growth factor receptor 1 (FGFR1), phosphorylate PKM2 at Tyr105, which inhibits its pyruvate kinase activity by disrupting binding to the allosteric activator fructose-1,6-bisphosphate and favoring a low-activity dimeric state. This modification promotes metabolic reprogramming toward the Warburg effect, enhancing biosynthetic pathways in proliferating cells. Additionally, Tyr105 phosphorylation facilitates the nuclear translocation of PKM2, where it functions as a protein kinase to phosphorylate substrates like STAT3, supporting gene expression changes conducive to tumorigenesis. Serine and threonine phosphorylation sites on PKM2, activated downstream of tyrosine kinase signaling, further contribute to these regulatory effects, though tyrosine phosphorylation predominates in dynamic control. Acetylation of lysine residues on PKM2 modulates both its stability and localization. Acetylation at Lys305, mediated by acetyltransferases, reduces PKM2 enzymatic activity by lowering its affinity for phosphoenolpyruvate and targets the protein for lysosomal degradation via chaperone-mediated autophagy, thereby limiting glycolytic capacity. In parallel, mitogenic or oncogenic stimulation induces acetylation at Lys433 by p300/CBP acetyltransferase, which inhibits tetramerization and pyruvate kinase activity while promoting nuclear accumulation of PKM2 to influence transcriptional regulation. Oxidation by reactive oxygen species (ROS) complements these effects, particularly under oxidative stress. ROS-mediated oxidation of Cys358 in PKM2 inhibits its activity, shunting glucose intermediates into the pentose phosphate pathway to generate NADPH and mitigate ROS damage, enhancing cell survival. Oxidation at Cys424 similarly disrupts tetramer stability, amplifying this adaptive response. Ubiquitination serves as a key mechanism for degrading inactive PKM2 dimers, maintaining optimal protein levels in proliferating cells. E3 ubiquitin ligases, including TRIM35 and Parkin, target dimeric PKM2 for proteasomal degradation, preventing accumulation of low-activity forms and favoring active tetramers when needed. This selective degradation pathway ensures metabolic flexibility by controlling the dimer-tetramer equilibrium. Isoform-specific differences highlight the regulatory prominence of these modifications in PKM2, which is highly susceptible to phosphorylation and other changes, unlike the constitutively active PKM1 tetramer that exhibits minimal responsiveness. In bacteria, pyruvate kinase modifications are infrequent but include lysine acetylation, as seen in Escherichia coli where deacetylation at the Lys413 site in the PykF isoform sharply enhances activity, linking epigenetic-like controls to metabolic adaptation.^[40]

Hormonal and Transcriptional Control

Insulin promotes the transcription of the liver-specific pyruvate kinase gene (PKLR) by inducing the expression of carbohydrate response element-binding protein (ChREBP), a key regulator of glycolytic genes. This occurs through insulin-mediated attenuation of the repressive transcription factor Oct-1 on the ChREBP promoter, enhancing ChREBP mRNA levels in hepatic cells. In synergy with glucose-activated pathways, insulin further amplifies ChREBP activity via interdependence with sterol regulatory element-binding protein-1c (SREBP-1c). Conversely, glucagon inhibits PKLR transcription during fasting states by elevating cyclic AMP (cAMP) levels, which suppresses the glucose-responsive activation of the L-type pyruvate kinase (L-PK) promoter.^[41]^[42]^[43] ChREBP serves as a central glucose-sensing transcription factor that binds to carbohydrate response elements (ChoREs) within the promoter of the PKLR gene, thereby upregulating its expression to increase glycolytic flux in response to carbohydrate availability. Glucose promotes ChREBP nuclear translocation and DNA-binding activity independently of insulin in hepatocytes, though full induction often requires hormonal synergy. Pharmacological modulation, such as metformin, inhibits ChREBP transcriptional activity via the AMP-activated protein kinase (AMPK) pathway, which phosphorylates ChREBP and reduces its binding to target promoters like that of L-PK.^[42]^[44]^[45] At the gene level, pyruvate kinase expression is finely tuned through alternative splicing and promoter usage. The PKM pre-mRNA undergoes mutually exclusive splicing regulated by heterogeneous nuclear ribonucleoproteins (hnRNPs), such as hnRNP A1, A2, and I, which favor inclusion of exon 10 over exon 9 to produce the PKM2 isoform; this shift is prominent in cancer cells due to oncogene-driven hnRNP upregulation, like by c-Myc. Tissue-specific promoters further dictate isoform expression: the PKLR gene employs distinct liver (for PKL) and erythrocyte (for PKR) promoters responsive to metabolic cues, while the PKM gene relies on splicing rather than multiple promoters for PKM1 and PKM2 production.^[46]^[47] Long-term adaptations to dietary glucose involve sustained induction of pyruvate kinase expression to support increased glycolytic capacity. High-carbohydrate diets elevate L-PK mRNA levels in the liver through glucose-mediated activation of ChREBP-bound ChoREs in the PKLR promoter, a process that is hormone-dependent and requires insulin and thyroid hormones for maximal effect. This transcriptional upregulation enables hepatocytes to efficiently process excess glucose, preventing metabolic overflow during fed states.^[48]^[49]

Clinical and Therapeutic Applications

Pyruvate Kinase Deficiency

Pyruvate kinase deficiency (PKD) is a rare autosomal recessive disorder characterized by chronic nonspherocytic hemolytic anemia due to mutations in the PKLR gene, which encodes the pyruvate kinase isozyme expressed in red blood cells (PKR) and liver (PKL).^[2] This condition impairs the final step of glycolysis, leading to reduced ATP production in erythrocytes, which rely almost exclusively on anaerobic glycolysis for energy, resulting in red blood cell fragility and hemolysis.^[50] The prevalence is estimated at up to 1 in 20,000 individuals, though lower rates of 3.2 to 8.5 per million have been reported in Western populations based on systematic reviews.^[2]^[5] Clinically, PKD presents with variable severity, often manifesting in infancy or childhood with jaundice, pallor, and fatigue due to hemolytic anemia, alongside hepatosplenomegaly and an increased risk of gallstones from chronic bilirubin elevation caused by red blood cell breakdown.^[2] In neonates, severe cases may involve hyperbilirubinemia, anemia, and even hydrops fetalis, while older patients commonly experience splenomegaly (in 80-85% of cases), gallstones (30-45%), and complications such as iron overload from repeated hemolysis.^[50] The hemolytic process stems directly from erythrocyte fragility due to ATP depletion, leading to shortened red blood cell lifespan and compensatory reticulocytosis.^[2] At the molecular level, over 250 mutations in the PKLR gene on chromosome 1q21 have been identified, with the majority being missense mutations that reduce enzyme stability, activity, or both; a representative example is the common missense mutation c.1529G>A (p.Arg510Gln), which destabilizes the enzyme tetramer and severely impairs catalytic function.^[51]^[50] These biallelic mutations (homozygous or compound heterozygous) result in PK activity levels typically below 25% of normal in erythrocytes, causing energy failure specific to these cells.^[2] The disorder primarily affects the PKR isoform in mature red blood cells, as this tissue lacks mitochondria and depends on PKR for ATP generation, whereas other tissues expressing different pyruvate kinase isozymes (such as PKM-encoded forms) are largely spared.^[50] Diagnosis involves demonstrating reduced erythrocyte PK activity through enzymatic assays, confirmed by genetic sequencing of the PKLR gene to identify causative mutations, alongside peripheral blood smear showing echinocytes and polychromasia without spherocytes.^[2] As an autosomal recessive condition, inheritance requires two mutated alleles, one from each parent, with carriers typically asymptomatic.^[50] There is no curative treatment; management focuses on supportive care, including folic acid supplementation to support erythropoiesis, blood transfusions for severe anemia, and splenectomy in cases of massive splenomegaly or transfusion dependence, which can reduce hemolysis but carries risks of infection.^[2] Iron chelation may be necessary for secondary hemosiderosis.^[50] Mitapivat, a small-molecule allosteric activator of pyruvate kinase approved by the FDA in 2022 for the treatment of hemolytic anemia in adults with PKD, has shown efficacy in increasing hemoglobin levels and reducing hemolysis; phase 3 trials for pediatric patients were positive as of 2025.^[52]^[53]

Role in Cancer

Pyruvate kinase M2 (PKM2), the predominant isoform in cancer cells, arises from alternative splicing that favors exon 10 inclusion over exon 9, replacing the PKM1 isoform in most tumors and promoting proliferative metabolism. This isoform switching occurs in approximately 70% of analyzed tumors, driven by factors such as hnRNP proteins and oncogenic signaling, which enhance PKM2 expression to support rapid cell division.00277-0) In the Warburg effect, characteristic of many cancers, PKM2 predominantly exists as low-activity dimers rather than active tetramers, slowing the conversion of phosphoenolpyruvate to pyruvate and accumulating upstream glycolytic intermediates. These intermediates are diverted toward biosynthetic pathways, enabling the production of nucleotides, amino acids, and lipids essential for tumor growth and proliferation. Beyond metabolism, PKM2 translocates to the nucleus under oncogenic stimuli like EGFR activation, where it functions as a protein kinase independent of its glycolytic role. Nuclear PKM2 phosphorylates STAT3 at tyrosine 705, activating transcription of genes such as MEK5 that drive cell proliferation and survival. Similarly, PKM2 phosphorylates histone H3 at threonine 11, promoting dissociation of HDAC3 from gene promoters and facilitating expression of cyclins and other oncogenes to support tumorigenesis.00040-0)00839-7) Recent studies highlight PKM2's epigenetic roles, where it interacts with chromatin regulators to modulate methylation and demethylation, influencing oncogene expression. In glioblastoma, nuclear PKM2 enhances β-catenin-mediated transcription, promoting tumor adaptability.^[54] In breast cancer, nuclear PKM2 cooperates with EZH2 to induce H3K27 trimethylation, repressing metabolic genes like SLC16A9.^[55] These mechanisms link metabolic reprogramming to epigenetic landscapes, sustaining aggressive phenotypes in cancers such as glioblastoma and breast cancer.

Inhibitors and Emerging Therapies

Pyruvate kinase (PK) inhibitors have been explored for their potential to disrupt glycolytic flux in pathological conditions, particularly where upregulated PK activity contributes to disease progression. Natural inhibitors include metformin, which reduces PK activity indirectly through activation of AMP-activated protein kinase (AMPK), leading to downregulation of pyruvate kinase M2 (PKM2) expression in nutrient-deprived cancer cells. In the context of phenylketonuria (PKU), elevated phenylalanine acts as an allosteric inhibitor of brain pyruvate kinase, contributing to metabolic disruptions and neurological damage observed in vivo.^[56] Synthetic small-molecule inhibitors targeting PKM2, the isoform predominantly expressed in cancer cells, have advanced in preclinical studies since 2020. Shikonin, a naphthoquinone derivative, binds to the dimer interface of PKM2, inhibiting its activity and suppressing aerobic glycolysis in various cancers, including esophageal squamous cell carcinoma and cholangiocarcinoma.^[57] Similarly, compound 3k selectively inhibits PKM2 by targeting its active site, inducing apoptosis and autophagy in ovarian and hepatocellular carcinoma cells through disruption of glycolytic metabolism.^[58] Recent developments (2020–2025) emphasize structure-based design of dimer-interface inhibitors, such as naphthoquinone analogs, which exhibit nanomolar potency against PKM2-overexpressing tumors; however, no PKM2 inhibitors have progressed to successful clinical trials, remaining in preclinical or early discovery phases.^[59] Therapeutically, PK inhibition shows promise in modulating redox imbalances and fibrosis. PKM2 blockers like shikonin lower hydrogen peroxide (H₂O₂) production by altering the NADH/NAD⁺ redox balance, thereby reducing reactive oxygen species (ROS)-mediated cellular damage in oxidative stress models. In fibrosis, PKM2 inhibition attenuates renal and pulmonary fibrotic progression; for instance, shikonin reduces transforming growth factor-β1 (TGF-β1) expression and lactate production in tubular cells, mitigating extracellular matrix deposition in preclinical kidney fibrosis models.^[60] For malaria, Plasmodium falciparum pyruvate kinase (PfPYK) serves as a target, with inhibitors like suramin demonstrating antimalarial activity by blocking parasite glycolysis, highlighting potential for species-specific therapies.^[61] These applications underscore PK inhibitors' role in redirecting metabolic dependencies in proliferative and inflammatory diseases.

References

[1]
An overview of structure, function, and regulation of pyruvate kinases
Pyruvate kinase catalyzes the irreversible conversion of ADP and phosphoenolpyruvate to ATP and pyruvic acid, both crucial for cellular metabolism.
[2]
Pyruvate Kinase Deficiency - StatPearls - NCBI Bookshelf
Pyruvate kinase deficiency (PKD) is the most common enzyme-related glycolytic defect that results in red cell hemolysis.
[3]
Pyruvate kinase PKM - p14618 · kpym_human - UniProt
There are 4 isozymes of pyruvate kinase in mammals (L, R, M1, M2) encoded by 2 different genes: PKLR and PKM. The L and R isozymes are generated from the ...
[4]
Human pyruvate kinase M2: A multifunctional protein - PMC
Pyruvate kinase, which catalyzes the last but rate-limiting step of glycolysis, is expressed in four isozymic forms, depending on the tissue requirement. M2 ...<|control11|><|separator|>
[5]
Prevalence of pyruvate kinase deficiency: A systematic literature ...
We conclude that prevalence of clinically diagnosed PK deficiency is likely between 3.2 and 8.5 per million in Western populations.
[6]
Pyruvate kinase activators for treatment of pyruvate kinase deficiency
Dec 8, 2023 · An oral allosteric PK activator, mitapivat, is now a clinically available disease-modifying treatment for adults with PK deficiency.
[7]
Loss of pyruvate kinase M2 limits growth and triggers innate immune ...
Oct 9, 2018 · Alternative splicing of the PKM gene to include exon 9 or 10 generates the PKM1 and PKM2 isozymes, respectively. While PKM1 exhibits ...
[8]
A comprehensive analysis of the pyruvate kinase M1/2 (PKM) in ...
Feb 10, 2025 · In vertebrates, pyruvate kinase is encoded by two genes. PKM and PKLR genes encode isoforms specific to muscle and liver/red blood cells ...
[9]
Structural basis for allosteric regulation of pyruvate kinase M2 by ...
While PKM1 exists in a constitutively active tetrameric state, PKM2 can exist in different oligomeric states: an active tetramer and a less active dimer/monomer ...
[10]
Pyruvate kinase M2 activators promote tetramer formation and ... - NIH
Structural studies reveal that small molecule activators bind PKM2 at the subunit interaction interface, a site distinct from that of the endogenous activator ...
[11]
PYRUVATE KINASE M2: A SIMPLE MOLECULE WITH COMPLEX ...
Tissue Distribution of the PK Isoforms. The PK family consists of four isoforms encoded by two separate genes. These isoforms are noted as PKL (liver), PKR ( ...
[12]
Pyruvate Kinase M2 Links Metabolism and Epigenetics - MDPI
The PKL isoform is predominantly found in the liver, pancreas, and kidneys, while PKR is restricted to red blood cells. PKM1 is mainly expressed in muscle ...Missing: vertebrates | Show results with:vertebrates
[13]
[PDF] Pyruvate kinase: Function, regulation and role in cancer
The PKM1 isoform is found in tissues with high catabolic demand, such as muscle, heart, and the brain. PKL is the major isoform in the liver and a minor isoform ...
[14]
Muscle‐specific pyruvate kinase isoforms, PKM1 and PKM2 ...
Jun 4, 2024 · PKM2 promotes the expression of the mSWI/SNF subunits DPF2 and BAF250a, while PKM1 promotes DPF2 nuclear localization.
[15]
Muscle-Specific Pyruvate Kinase Isoforms, Pkm1 and Pkm2 ...
Apr 11, 2024 · Our results identify multiple unique roles for Pkm2 and a novel function for Pkm1 in gene expression and chromatin regulation during myoblast differentiation.Missing: 2020-2025 | Show results with:2020-2025
[16]
Reexamination of the Physiological Role of PykA in Escherichia coli ...
Two isozymes of pyruvate kinase, PykF and PykA, are identified in Escherichia coli. PykF is considered important, whereas PykA has a less-defined role.
[17]
Cloning of the two pyruvate kinase isoenzyme structural genes from ...
We report the cloning of the pykA and pykF genes from Escherichia coli, which code for the two pyruvate kinase isoenzymes.Missing: function | Show results with:function
[18]
(PDF) Cloning of the two pyruvate kinase isoenzyme structural ...
Aug 6, 2025 · We report the cloning of the pykA and pykF genes from Escherichia coli, which code for the two pyruvate kinase isoenzymes (ATP:pyruvate 2-O- ...
[19]
Crystal structure of Escherichia coli pyruvate kinase type I - Cell Press
Figure 7 Comparison between the PK subunit in the T-state (black) and M1 protein (red). The picture has been obtained by superposing the Cα atoms of the A ...
[20]
Crystal structure of Escherichia coli pyruvate kinase type I
We have determined the three-dimensional structure of the allosteric type I PK from Escherichia coli, in order to study the mechanism of allosteric regulation.Missing: PykF | Show results with:PykF
[21]
Recombinant production of Yersinia enterocolitica pyruvate kinase ...
The type I PK (PykF) of E. coli is characterised as an enzyme that is allosterically activated by FBP, whereas type II PK (PykA) is not [6], [7].
[22]
pyk - Pyruvate kinase - Bacillus subtilis (strain 168) | UniProtKB
Protein. Pyruvate kinase · Gene. pyk · Status. UniProtKB reviewed (Swiss-Prot) · Organism. Bacillus subtilis (strain 168) · Amino acids. 585 (go to sequence).Missing: isoforms | Show results with:isoforms
[23]
Pyruvate kinase directly generates GTP in glycolysis, supporting ...
In this study, we reveal that pyruvate kinase, a key glycolytic enzyme, primarily generates GTP from GDP in Bacillus subtilis, relative to other nucleotide ...
[24]
Allosteric regulation of pyruvate kinase enables efficient and robust ...
Jan 28, 2025 · Using the model bacterium Bacillus subtilis as an example, we discovered that pyruvate kinase activity is inhibited during gluconeogenesis ...
[25]
https://bio.libretexts.org/Bookshelves/Biochemistry/Fundamentals_of_Biochemistry_(Jakubowski_and_Flatt)/02:_Unit_II-_Bioenergetics_and_Metabolism/13:_Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:_Glycolysis
[26]
Solved The reaction pyruvate + ATP ADP + PEP is catalyzed - Chegg
Sep 9, 2021 · The reaction pyruvate + ATP ⇌ ADP + PEP is catalyzed by the enzyme pyruvate kinase. ΔG°' for this reaction is +31.4 kJ/mol.
[27]
Phosphoenolpyruvate and Mg2+ Binding to Pyruvate Kinase ... - NIH
The first step is phosphoryl transfer from PEP to ADP which produces ATP and the enolate of pyruvate (1). The second step is the addition of a proton to the ...
[28]
Pyruvate kinase - M-CSA Mechanism and Catalytic Site Atlas
Pyruvate kinase catalyses the final step of glycolysis and is allosterically regulated by fructose-1,6-bisphosphate.
[29]
Thermodynamics of the Pyruvate Kinase Reaction and the Reversal ...
The thermodynamic data for the different forms of the pyruvate kinase reaction, including the ΔG′° and equilibrium constants, are summarized in Table II. The ...Missing: delta | Show results with:delta
[30]
CHEM 440 - Gluconeogenesis
Nov 27, 2016 · The glycolytic reaction catalyzed by pyruvate kinase the final such irreversible step, is bypassed in gluconeogenesis by a two-step process.
[31]
Evidence for reverse flux through pyruvate kinase in skeletal muscle
Reverse flux through the pyruvate kinase reaction bypasses the oxaloacetate/malate pool, whereas carboxylation of pyruvate to oxaloacetate/malate followed by ...
[32]
Lactate Contributes to Glyceroneogenesis and Glyconeogenesis in ...
Earlier studies have reported that reverse flux through PK can contribute carbon precursors for glycogen synthesis in muscle, but the physiological importance ...
[33]
Distinct Hepatic PKA and CDK Signaling Pathways Control Activity ...
Gluconeogenesis is classically thought to be regulated by glucagon by protein kinase A (PKA) phosphorylation of pyruvate kinase liver isoform (PKL) (Feliú et al ...
[34]
Role of pyruvate kinase in the regulation of gluconeogenesis from L ...
Fasting of rats decreased liver pyruvate kinase activity from 27 units/g. (normal diet) to 12 units/g after 24 h and to 10 units/g after 48 h (1). These results.Missing: isoform PKLR
[35]
M2 pyruvate kinase provides a mechanism for nutrient sensing and ...
The allosteric activator fructose-1,6-bisphosphate [F16BP, AC50 (concentration that gives 50% activation) of 7 μM] shifts the equilibrium to the tetrameric ...
[36]
The allosteric regulation of pyruvate kinase by fructose-1,6 ...
Feb 15, 1998 · The M2, R and L isozymes are allosterically regulated via feed-forward activation by FBP, the product of the phosphofructokinase (PFK) reaction.Missing: phenylalanine | Show results with:phenylalanine
[37]
Pyruvate Kinase - FEBS Press
allosteric inhibition by ATP and alanine, and activation by fructose 1,6-bisphosphate. Class A, present in adipose tissue, and the major component in kidney ...
[38]
An allostatic mechanism for M2 pyruvate kinase as an amino-acid ...
A novel regulatory mechanism by which M2PYK activity is finely tuned by the relative (but not absolute) concentrations of activator and inhibitor amino acids.<|control11|><|separator|>
[39]
Pyruvate kinase: function, regulation and role in cancer - PMC - NIH
Each PKM2, PKL, and PKR subunit contains one binding site that is specific for FBP and distinct from the active site (Figure 2); FBP binding acts at a distance ...
[40]
Insulin Stimulates the Expression of Carbohydrate Response ...
ChREBP transcriptional expression is negatively regulated by the POU protein transcription factor Oct-1, while insulin stimulates ChREBP expression by atte.
[41]
Carbohydrate Sensing Through the Transcription Factor ChREBP
Jun 3, 2019 · Carbohydrate response element binding protein (ChREBP) is a glucose-signaling transcription factor central for the regulation of glycolysis ...
[42]
Glucose and cAMP regulate the L-type pyruvate kinase gene ... - NIH
These results thus reveal mechanisms for regulation of ChREBP and the L-PK transcription by excess carbohydrate and cAMP.
[43]
Deficiency of carbohydrate response element-binding protein ...
In primary hepatocytes, ChREBP stimulates LPK gene transcription in response to high concentrations of glucose without any apparent requirement for insulin. The ...
[44]
ChREBP-Mediated Regulation of Lipid Metabolism - Frontiers
AMP-activated protein kinase (AMPK) is known to be a major target ... In addition, both AMPK and metformin reduce the transcriptional activity of ChREBP.
[45]
HnRNP proteins controlled by c-Myc deregulate pyruvate ... - PubMed
Jan 21, 2010 · These two isoforms result from mutually exclusive alternative splicing of the PKM pre-mRNA, reflecting inclusion of either exon 9 (PKM1) or exon ...
[46]
PKM2, cancer metabolism, and the road ahead - PMC
Nov 17, 2016 · There are two pyruvate kinase genes, PKLR and PKM. PKLR encodes the PKL and PKR isoforms through tissue‐specific promoters (shown in purple for ...
[47]
Glucose and cAMP regulate the L-type pyruvate kinase gene by ...
ChREBP contains two major phosphorylation sites, P1 and P3, which are regulated by the phosphorylation/dephosphorylation mechanism mediated by cAMP and glucose.
[48]
Dietary and hormonal regulation of L‐type pyruvate kinase gene ...
The L-type pyruvate kinase mRNA increase, induced by glucose feeding, is hormone-dependent and requires the presence of thyroid hormones and insulin.
[49]
Pyruvate Kinase Deficiency: Current Challenges and Future Prospects
Sep 1, 2022 · Pyruvate kinase deficiency (PKD) is a rare autosomal recessive disease marked by chronic hemolytic anemia of various severity and frequent complications.
[50]
Red Blood Cell PK Deficiency: An Update of PK-LR Gene Mutation ...
Pyruvate kinase (PK) deficiency is known as being the most common cause of chronic nonspherocytic hemolytic anemia (CNSHA). Clinical PK deficiency is ...
[51]
Phenylketonuria: phenylalanine inhibits brain pyruvate kinase in vivo
The hypothesis that brain damage in phenylketonuria is related to inhibition of pyruvate kinase by phenylalanine was examined in rat brain in vivo.
[52]
Shikonin and its analogs inhibit cancer cell glycolysis by ... - PubMed
Oct 20, 2011 · Shikonin and its analogs inhibit cancer cell glycolysis by targeting tumor pyruvate kinase-M2 (PKM2), which is vital for cancer cell ...
[53]
Specific Pyruvate Kinase M2 Inhibitor, Compound 3K, Induces ...
May 5, 2021 · Here, we investigated the anticancer effects of compound 3K, a specific PKM2 inhibitor, on the regulation of autophagic and apoptotic pathways in SK-OV-3.
[54]
Recent progress in the development of small molecule pyruvate ...
Oct 24, 2025 · Pyruvate kinase M2 (PKM2) is a central regulator of glycolysis and anabolic metabolism, playing a pivotal role in cancer cell proliferation.<|separator|>
[55]
https://www.sciencedirect.com/science/article/pii/S1550413123004552
[56]
Pyruvate kinase from Plasmodium falciparum: Structural and kinetic ...
Nov 12, 2020 · Intriguingly, the trypanosome drug suramin inhibits PfPYK, which points to glycolysis as a set of potential therapeutic targets against malaria.