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Chromosome 8

Human chromosome 8 is one of the 23 pairs of chromosomes in the normal human karyotype, characterized as a medium-sized metacentric chromosome that spans more than 146 million base pairs of DNA and accounts for between 4.5% and 5% of the total genetic material in cells. It encodes approximately 700 protein-coding genes, along with thousands of non-coding RNAs and pseudogenes, which collectively contribute to essential biological processes such as brain development, innate immunity, and cellular signaling. In 2021, the first complete end-to-end assembly of human chromosome 8 was achieved using long-read sequencing technologies, revealing a total length of 146,259,671 base pairs, including previously unsequenced regions like the centromere and a polymorphic β-defensin gene cluster at 8p23.1. The is divided into a shorter p arm (approximately 45 million base pairs) and a longer q arm (over 100 million base pairs), with the located near the middle at 8p11-q11. Notable structural features include higher-order α-satellite repeats in the , which span about 2.08 megabases and exhibit evolutionary conservation among great apes, as well as copy number variations in immune-related gene clusters that influence disease susceptibility. Key genes on chromosome 8 include at 8q24, a proto-oncogene involved in and frequently deregulated in various cancers through translocations or amplifications. Abnormalities in chromosome 8 are associated with a range of genetic disorders and malignancies. , often occurring in mosaic form, leads to developmental delays, , and characteristic facial features. Recombinant chromosome 8 syndrome, caused by a deletion of most of the short (p) arm and duplication of the distal long (q) arm resulting from a parental pericentric inversion, features , growth retardation, and congenital anomalies such as heart and urinary tract defects, while 8q deletions are linked to trichorhinophalangeal syndrome type II, characterized by skeletal and hair abnormalities. In oncology, translocations such as t(8;14)(q24;q32) drive by juxtaposing MYC with immunoglobulin loci, and t(8;21)(q22;q22) contributes to core binding factor acute myeloid leukemia. Additionally, copy number variations in the β-defensin cluster on 8p have been implicated in inflammatory conditions like .

Overview

Physical Characteristics

Chromosome 8 is one of the 23 pairs of chromosomes found in the of human cells and is classified as an , meaning it does not play a role in sex determination. It exhibits a submetacentric , characterized by a positioned slightly off-center, which results in two arms of unequal length: a shorter p arm and a longer q arm. This morphology is visible under microscopic examination during of , where the chromosome appears as a distinct, rod-like . The total length of chromosome 8 is approximately 146 million base pairs (), accounting for about 4.5–5% of the entire . The short arm (8p) measures around 45 , while the long arm (8q) extends to about 101 , with the separating these regions at roughly the 45 Mb mark from the p-arm . The of chromosome 8 is a specialized heterochromatic region composed primarily of higher-order α-satellite DNA repeats, forming a 2.08 array known as D8Z2, which is AT-rich and flanked by monomeric α-satellite sequences on the p arm. Constitutive heterochromatin is concentrated at this centromeric core, as well as at the telomeric ends of both the p and q arms, contributing to the chromosome's and compaction. These heterochromatic distributions are typical of human chromosomes and aid in maintaining during replication and .

Functional Role

Chromosome 8, as one of the 22 autosomes in the , plays a fundamental role in the transmission of genetic material across generations by being inherited as a pair—one copy from each parent—in diploid cells. This paired structure ensures the balanced inheritance of autosomal genetic information during formation and fertilization, maintaining the diploid state essential for human development and cellular function. In cellular processes, chromosome 8 is critical for normal and . During the of the , the DNA comprising chromosome 8 duplicates to form , preparing for equitable distribution to daughter cells. This replication process, coupled with the chromosome's submetacentric configuration—with the positioned slightly off-center—facilitates efficient packaging and alignment on the mitotic spindle, supporting accurate segregation during to preserve genomic integrity in proliferating somatic cells. Furthermore, chromosome 8 contributes to overall stability through its role in maintaining proper in diploid cells, where the presence of two homologous copies prevents imbalances that could disrupt cellular . In , the chromosome's structure enables homologous pairing and recombination, ensuring haploid gametes receive a single intact copy, which is vital for and stable inheritance. Its relatively large size, spanning approximately 146 million base pairs, influences compaction, aiding in the orderly progression of meiotic divisions without compromising fidelity.

Genomic Structure

Cytogenetic Banding

Cytogenetic banding of chromosome 8 refers to the visualization of its characteristic light and dark patterns under light microscopy, which aids in chromosome and abnormality detection during karyotyping. Chromosome 8 is submetacentric, featuring a shorter p arm and a longer q arm separated by the . The pattern on the short arm (8p) includes major bands from 8p23 distally to 8p11 proximally, such as 8p23, 8p22, 8p21, 8p12, and 8p11, with the p arm typically displaying two dark bands that may appear somewhat unclear. On the long arm (8q), bands extend from 8q11 near the to 8q24 at the , encompassing prominent regions like 8q11, 8q12, 8q13, 8q21, 8q22, 8q23, and 8q24, where two to three dark bands are visible, the most distal one being notably intense. G-banding, the most common technique for this visualization, involves treating fixed metaphase chromosomes with trypsin to partially digest proteins and expose differential staining sites, followed by staining with Giemsa solution, which binds preferentially to AT-rich DNA regions to produce dark G-positive bands while leaving GC-rich areas as light G-negative bands. This method reflects underlying chromatin differences, with dark bands corresponding to late-replicating, gene-poor regions and light bands to early-replicating, gene-rich areas. Routine G-banding of chromosome 8 achieves a resolution of 400-550 bands per haploid set, sufficient to resolve structural features and alterations larger than 5-10 megabases. In clinical practice, the cytogenetic banding pattern of chromosome 8 is essential for , enabling the detection of structural abnormalities such as interstitial deletions, duplications, or balanced/unbalanced translocations that may disrupt chromosomal integrity. These banding features provide a foundational tool for identifying potential chromosomal imbalances, which are further explored in sections on associated conditions.

Sequence Assembly

The initial assembly of human chromosome 8 as part of the , completed in 2003, covered over 90% of the genome but left substantial gaps, particularly in heterochromatic and highly repetitive regions such as centromeres and segmental duplications. A subsequent finished sequence of the euchromatic portion was published in 2006, spanning approximately 145 million base pairs, yet unresolved gaps persisted in pericentromeric and telomeric areas due to limitations in short-read sequencing technologies. Significant progress toward a complete assembly occurred in 2021 with the first telomere-to-telomere (T2T) sequence of chromosome 8, achieved using complementary long-read technologies including ultra-long (ONT) reads and (PacBio) HiFi sequencing. This assembly spans 146,259,671 bases, adding 3,334,256 unique bases beyond the prior GRCh38 reference, and fully resolves previous gaps in repetitive regions. This chromosome 8 assembly contributed to the 2022 T2T-CHM13 telomere-to-telomere reference, which includes a complete sequence of chromosome 8 and serves as a current standard as of 2025. Key milestones include the complete resolution of the centromeric alpha-satellite array, a 2.08 D8Z2 higher-order repeat () structure that is heavily methylated except for a 73-kb hypomethylated region within a 632-kb CENP-A domain. Long-read sequencing also enabled the precise assembly of challenging repetitive loci, such as the beta-defensin at 8p23.1, resolving it into a 7.06 region and eliminating two 50 gaps from GRCh38. These advancements provide a gapless reference for future genomic studies, highlighting the role of advanced sequencing in overcoming the limitations of earlier assemblies.

Genetic Content

Gene Count and Density

Human chromosome 8 harbors approximately 710 protein-coding genes, based on annotations from Ensembl and GENCODE releases up to 2025. In addition to these, the chromosome includes thousands of non-coding RNA genes, pseudogenes, and other genetic elements such as regulatory RNAs, bringing the total annotated gene count to over 2,400. This represents roughly 3.6% of the human genome's approximately 19,400 protein-coding genes overall. Gene density on chromosome 8 is lower than the genomic average, at about 5 genes per megabase (), compared to the approximately 6-7 protein-coding genes per Mb across the euchromatic . Spanning roughly 146 , the chromosome exhibits uneven distribution, with higher gene clustering in euchromatic bands such as 8q and 8p regions, while heterochromatic pericentromeric areas show reduced density. The complete telomere-to-telomere of 8, published in , added over 3 million bases previously missing from GRCh38, identifying 61 new protein-coding genes and 33 new non-coding genes in gapped regions like the β-defensin at 8p23.1, including 12 new protein-coding loci in that cluster from long-read transcriptomics.

Key Genes

Chromosome 8 harbors several s with critical roles in cellular processes, including the proto-oncogene located at band 8q24. The encodes a that functions as a , regulating progression, , and cellular transformation by activating and repressing numerous target s involved in and growth. Another prominent on chromosome 8 is (neuregulin 1) at 8p12, which encodes a signaling protein that mediates cell-cell interactions and plays a key role in neural development by promoting the growth and differentiation of neurons and glial cells through activation of receptor tyrosine kinases. Adjacent to NRG1 at 8p12 is GSR (), which encodes an that catalyzes the reduction of to the sulfhydryl form , thereby maintaining cellular balance and supporting defense mechanisms essential for protecting against . The ANK1 gene, situated at 8p11.21, produces ankyrin-1, a cytoskeletal protein that anchors the spectrin-actin network to the plasma membrane in red blood cells, thereby ensuring membrane stability and structural integrity during cellular deformation. At the telomeric region 8p23.1 lies MCPH1 (microcephalin 1), which encodes a protein involved in brain development through regulation of centrosome duplication, chromosome condensation, and DNA damage response pathways that coordinate cell division and genomic integrity.

Associated Conditions

Chromosomal Abnormalities

Chromosomal abnormalities of chromosome 8 encompass numerical and structural variants that disrupt the normal genetic balance, often arising de novo or through parental inheritance, and are detectable through cytogenetic and molecular techniques. These alterations can lead to partial monosomy or trisomy of specific regions, resulting in developmental and physical challenges. Partial deletions of the short arm, particularly involving the 8p23.1 to pter region (monosomy 8p), are among the more frequently reported structural changes, with affected individuals exhibiting growth deficiency and congenital malformations such as heart defects and diaphragmatic issues. Duplications of chromosome 8, including partial 8p and supernumerary ring chromosomes derived from chromosome 8, represent gain-of-function abnormalities that typically cause and developmental delays. 8p involves duplication of the short arm, leading to a highly variable that may include facial dysmorphisms and motor impairments, while supernumerary ring chromosomes 8 often occur in form and contribute to cognitive challenges without consistent loss of subtelomeric sequences. Translocations involving chromosome 8 are structural rearrangements that exchange genetic material with other chromosomes, commonly observed in hematologic conditions; for instance, the t(8;21)(q22;q22) translocation fuses parts of chromosomes 8 and 21 and occurs in approximately 5-12% of cases. Isochromosomes of chromosome 8, such as i(8q) or i(8p), are rare mirror-image duplications that result in of one arm and of the other, though they are infrequently documented outside specific disease contexts. Detection of these abnormalities relies on techniques like (FISH) for targeted locus analysis and array comparative genomic hybridization (array CGH) for high-resolution mapping of copy number variations. 8p deletions are rare chromosomal abnormalities with clinical significance in prenatal and postnatal diagnostics.

Genetic Disorders

Langer-Giedion syndrome, also known as trichorhinophalangeal syndrome type II (TRPS II), is a rare contiguous gene deletion disorder caused by a microdeletion at 8q24.11-q24.13 that encompasses the TRPS1 and EXT1 genes. This deletion leads to characteristic clinical features including sparse scalp hair, bulbous nasal tip, thin upper lip, , , and multiple bony exostoses, with skeletal abnormalities such as cone-shaped epiphyses and . The syndrome overlaps significantly with TRPS II, sharing the same genetic etiology and manifesting similar craniofacial and skeletal dysmorphisms, though exostoses are more prominent in Langer-Giedion cases due to EXT1 . is autosomal dominant, but most cases arise , with rare familial transmission reported. Diagnosis typically involves clinical evaluation of dysmorphic features followed by chromosomal microarray analysis or to confirm the 8q deletion. Recombinant chromosome 8 syndrome, also called rec(8) syndrome or syndrome, results from a recombinant chromosome 8 with duplication of 8q22.1→qter and deletion of 8p23.1→pter, often originating from malsegregation during in a parent carrying a pericentric inversion of chromosome 8 (inv(8)(p23.1q22.1)). Affected individuals exhibit a distinctive phenotype including moderate to severe , postnatal growth retardation, facial anomalies such as , anteverted nares, and a thin upper lip, as well as congenital heart defects (e.g., in approximately 40% of cases) and genitourinary malformations. The condition is more prevalent in individuals of descent from the region due to a . Inheritance follows an autosomal dominant pattern with a parental carrier risk of about 6.2% for an affected offspring, higher in maternal transmissions. Diagnosis is established through karyotyping or chromosomal microarray to identify the specific duplication-deletion pattern. Hereditary spherocytosis type 1 (HS1) is an inherited primarily caused by mutations in the ANK1 gene at 8p11.21, which encodes erythroid -1, a key protein for stability. These mutations, including missense, nonsense, and frameshift variants, disrupt ankyrin function, leading to spherical s with increased fragility, resulting in symptoms such as chronic , , , and formation. Unlike deletion syndromes, HS1 does not involve large-scale chromosomal changes but rather point mutations or small insertions/deletions. The disorder is typically autosomal dominant with variable expressivity, though recessive forms occur with compound heterozygous mutations; mutations are infrequent but possible. relies on peripheral showing spherocytes, osmotic fragility testing, and confirmatory genetic sequencing of ANK1. These disorders highlight the diverse clinical impacts of chromosome 8 alterations, with essential for precise diagnosis and counseling, often revealing events in structural variants.

Cancer Associations

Oncogenic Regions

Chromosome 8 exhibits several recurrent alterations that contribute to oncogenesis, with gains on the long arm (8q) being among the most frequent aneuploidies observed across various solid tumors, including and cancers. These gains often involve of specific subregions, leading to overexpression of oncogenes and promotion of tumor progression. In particular, 8q gain has been reported in approximately 30-70% of cases, depending on disease stage, with higher frequencies in advanced or hormone-refractory tumors. A key oncogenic hotspot is the 8q24 region, which contains long-range enhancer elements that regulate the nearby proto-oncogene, a well-known driver of and survival. Amplification of 8q24 is common in solid tumors and results in enhanced expression through these non-coding regulatory sequences located in a gene desert. This alteration is implicated in multiple cancer types due to its role in disrupting normal transcriptional control of . In contrast, losses on the short arm, particularly at 8p23, involve deletions in the beta-defensin gene cluster, which encodes with potential tumor-suppressive functions. The human beta-defensin 1 (DEFB1) gene in this region acts as a candidate tumor suppressor, and its cancer-specific loss through homozygous deletion or epigenetic silencing promotes tumor development. These deletions are frequently associated with (LOH), a mechanism that inactivates the remaining and eliminates suppressive activity. The primary mechanisms driving these oncogenic changes include chromosomal amplification, which increases and leads to overexpression, such as MYC at 8q24, and LOH at 8p, which results in biallelic inactivation of tumor suppressors like DEFB1. These alterations often arise from chromosomal instability, including breakage-fusion-bridge cycles or formation, contributing to the selective advantage of cancer cells.

Specific Malignancies

Chromosome 8 alterations are implicated in several specific malignancies, primarily through translocations, amplifications, or gains that dysregulate key oncogenes such as and FGFR1, or create fusion proteins like RUNX1-ETO. These genetic changes drive tumorigenesis by enhancing proliferation, inhibiting differentiation, and promoting survival pathways in affected cell types. In , the most common chromosomal abnormality is the translocation t(8;14)(q24;q32), which juxtaposes the proto-oncogene at 8q24 with the locus (IGH) at 14q32, leading to constitutive overexpression under the control of immunoglobulin enhancers. This translocation occurs in approximately 75-80% of sporadic and endemic cases, resulting in rapid B-cell proliferation and lymphomagenesis. Variant translocations t(2;8) or t(8;22) involving light chain loci are less frequent but similarly activate . Acute myeloid leukemia (AML) with maturation (FAB M2 subtype) frequently features the t(8;21)(q22;q22) translocation, fusing the RUNX1 (also known as AML1) gene on chromosome 21q22 with the RUNX1T1 (formerly ETO) gene on 8q22 to produce the RUNX1-ETO . This fusion acts as a transcriptional repressor, blocking normal myeloid differentiation and promoting leukemic stem cell self-renewal, and is found in 5-12% of AML cases overall. The presence of this fusion often correlates with a favorable response to standard , though additional mutations can worsen outcomes. The 8p11 myeloproliferative syndrome (), a rare and aggressive disorder, arises from various translocations at 8p11 that fuse the FGFR1 with partner genes, leading to ligand-independent receptor activation and constitutive signaling through downstream pathways like PI3K/AKT and MAPK. Over 15 such fusions have been identified, including t(8;13)(p11;q12) with FGFR1OP1/ZNF198 and t(8;22)(p11;q11) with BCR, resulting in an initial myeloproliferative phase that rapidly progresses to in most patients. typically presents with and , distinguishing it from other . In prostate cancer, gains or amplifications of the 8q24 region, encompassing the MYC locus, are observed in up to 50% of advanced tumors and strongly correlate with disease progression, higher Gleason scores, and increased risk of metastasis. These copy number alterations drive MYC overexpression, which disrupts androgen receptor signaling and promotes epithelial-to-mesenchymal transition, facilitating tumor invasion. Such 8q24 gains serve as an independent predictor of biochemical recurrence post-prostatectomy. Prognostic implications of chromosome 8 alterations vary by malignancy; for instance, t(8;21) in AML is generally associated with better overall survival compared to other cytogenetic risks, while 8q24 gains in predict poorer outcomes and higher metastatic potential. In , the rapid progression to blast crisis confers a dismal prognosis without allogeneic transplantation, with median survival under 18 months. Targeted therapies are emerging, particularly for MYC-driven cancers; FGFR1 inhibitors like have shown activity in by blocking fusion kinase signaling, achieving responses in preclinical models and early clinical cases. For MYC-dependent malignancies like , small-molecule inhibitors such as CX-5461 (a POLR1 indirectly targeting MYC) and devimistat (CPI-613) are in phase I/II trials, demonstrating complete remissions in relapsed/refractory settings with manageable toxicity. As of 2025, at least five MYC-targeted agents are under evaluation in trials, emphasizing combination strategies to overcome MYC's undruggability.

Evolutionary Aspects

Comparative Genomics

Human chromosome 8 exhibits high synteny with its orthologous chromosome 8 in other , particularly great apes, reflecting the close evolutionary relationship among these . Comparative analyses reveal that the overall structure of human 8 is largely conserved with chimpanzee 8, with only minor rearrangements such as small inversions and translocations in pericentromeric and telomeric regions. This conservation extends to and orangutans, where chromosome painting and marker mapping confirm shared gene order and orientation across most of the chromosome arms. The 2021 telomere-to-telomere assembly of human 8 has further illuminated these homologies, showing approximately 99% sequence identity in aligned regions with great ape orthologs, providing key insights into the between humans and apes that occurred around 6-7 million years ago. In contrast, synteny with genomes is more fragmented due to extensive rearrangements over ~90 million years of divergence. chromosome 8 corresponds to segments distributed across chromosomes 3, 8, and 13, with at least 10-15 synteny blocks identified through high-resolution breakpoint mapping using bacterial artificial chromosome sequences. These disruptions highlight the dynamic nature of mammalian , where inversions, fusions, and fissions have reshaped chromosomal architecture while preserving functional linkages. A notable divergent feature is the β-defensin gene cluster on the short arm (8p23.1), which has undergone significant expansion in the human lineage compared to other apes, driven by segmental duplications and copy number variations linked to enhanced innate immunity. This cluster, comprising up to 40 genes in humans with polymorphic copy numbers ranging from 2 to 12, shows fewer intact copies in chimpanzees and , suggesting adaptive evolution in response to pressures unique to hominins. Orthologs of key genes on chromosome 8, such as the proto-oncogene at 8q24.21, are highly conserved across mammals, maintaining similar exon-intron structures and regulatory elements from mice to . This conservation underscores the essential role of in cellular proliferation and development, with sequence identities exceeding 90% in coding regions even in distantly related species like .

Human-Specific Elements

The complete linear assembly of human chromosome 8, achieved in 2021 using long-read sequencing technologies, revealed approximately 3.33 Mb of previously unsequenced DNA, including 12 novel protein-coding genes within the at 8p23.1. Among these, five additional DEFB genes (DEFB103B, DEFB104A, DEFB105A, DEFB106A, and DEFB107A) were identified in regions that were gaps in prior assemblies, contributing to function through peptide production and associating with phenotypes such as and via copy number variations. This cluster's resolution highlights human-specific expansions in immune-related loci, potentially influencing pathogen resistance in modern populations. An inverted haplotype spanning 4.11 Mb at 8p23.1, resolved in the same assembly, predisposes to recurrent microdeletions that increase risks for congenital heart defects, microcephaly, and developmental delay, underscoring chromosome 8's role in neurodevelopmental and cardiac vulnerabilities unique to human genomic architecture. Centromeric regions of human chromosome 8 exhibit distinct CpG methylation patterns within α-satellite higher-order repeat (HOR) variants, as observed across haplotype-resolved assemblies like CHM1 and CHM13. These patterns feature hypomethylated DNA at the kinetochore site, known as the centromere dip region (CDR), which varies in position—averaging 178 kb in CHM1 versus 214 kb in CHM13—and can shift by over 500 kb between individuals, thereby modulating centromere strength and chromosomal stability through epigenetic regulation of kinetochore assembly. Such human-specific epigenetic variability in α-satellite arrays may contribute to inter-individual differences in genome integrity. Human-specific structural variants in the 8p23.1 region, including a 4.2-Mb inversion polymorphism present at frequencies of 60% in African populations and 20% in Asian populations, arise from interchromosomal core duplicons (e.g., DA/Xiao elements) that drive recurrent rearrangements. These duplications, which expanded over approximately 25 million years and include a 746-kb duplicative dated to about 0.84 million years ago, facilitate evolutionary instability but also heighten disease susceptibility; for instance, microdeletions of 3.6 Mb in this region are linked to congenital heart defects, , and developmental delay, with breakpoints often mapping to duplicon-rich segments like SD19 and SD20/21/25. Evolutionary regions on chromosome 8, particularly around 8p12, harbor the WRN gene, where biallelic loss-of-function mutations cause —a premature aging disorder manifesting in with accelerated features like graying hair, cataracts, , and cancer predisposition, uniquely prevalent in human populations. Over 2,300 sequence variants in WRN have been documented in humans, many of uncertain pathogenicity but potentially modulating aging-related risks through impaired and activity, distinguishing human susceptibility from other . This locus exemplifies chromosome 8's contribution to human-specific aging trajectories, with no direct ortholog equivalents in non-human species exhibiting the full syndrome.

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