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MEFV

The MEFV gene encodes pyrin (also known as marenostrin), a 781-amino-acid protein that functions as an innate immunity regulator by modulating inflammasome assembly and controlling inflammatory responses in white blood cells such as neutrophils, monocytes, and eosinophils. Located on the short arm of chromosome 16 at cytogenetic band 16p13.3, the gene spans approximately 14.5 kilobases and consists of 10 exons, with expression primarily in granulocytes and other immune cells. Mutations in MEFV are the primary cause of Familial Mediterranean Fever (FMF), an autosomal recessive autoinflammatory disorder marked by recurrent, self-limited episodes of fever accompanied by serositis (inflammation of the serous membranes lining the abdomen, chest, or joints), often lasting 12 to 72 hours, but also contribute to other pyrinopathies. Pyrin plays a critical role in innate immunity by sensing disruptions in Rho activity—often triggered by bacterial toxins—and forming an complex with ASC (apoptosis-associated speck-like protein containing a CARD) and pro-caspase-1, which activates the production of interleukin-1 beta (IL-1β) to mount an . In healthy individuals, pyrin inhibits excessive caspase-1 activation to prevent unwarranted , but loss-of-function mutations in MEFV impair this regulation, leading to uncontrolled IL-1β release and periodic inflammatory flares. Over 80 variants have been identified, with more than 50 confirmed as pathogenic; the most common being M694V ( to at position 694) in 10, which is associated with severe phenotypes, high (up to 99% in homozygotes), and an elevated risk of amyloid A (AA) —a complication that can progress to . Other frequent mutations include V726A and E148Q, which exhibit variable and contribute to the disorder's phenotypic heterogeneity. FMF predominantly affects populations of Mediterranean descent, including , , Turks, and , with carrier frequencies reaching 1 in 5 to 1 in 7 in these groups and estimated at 1 in 200 to 1 in 1,000. The condition is inherited in an autosomal recessive manner, requiring biallelic mutations for full expression, though rare autosomal dominant cases or pseudodominance (due to high carrier rates) have been reported. Symptoms typically onset in childhood or early , with attacks triggered by , , or , and may include erysipelas-like skin rashes, , or in addition to the core fever and features. Without , chronic inflammation can lead to systemic in 25-75% of untreated cases, particularly in severe genotypes. Diagnosis of FMF relies on clinical criteria such as the criteria, combined with for MEFV variants, which supports the diagnosis, although up to 25% of clinically diagnosed cases may lack identifiable biallelic pathogenic variants. The cornerstone of treatment is , a inhibitor that prevents attacks in 60-90% of patients and reduces risk by suppressing pyrin-mediated . For -resistant cases (5-10% of patients), biologic agents targeting IL-1β, such as or , are recommended per 2025 EULAR/PReS guidelines, with efficacy demonstrated in clinical trials and practice. is recommended for at-risk families, given the high carrier rates in affected ethnic groups.

Gene and Protein

Genomic Location and Structure

The MEFV gene is located on the short arm of at cytogenetic band p13.3, spanning genomic coordinates 3,242,027 to 3,256,633 on the GRCh38.p14 reference , on the minus strand. This positions it within a gene-dense region of the , flanked by neighboring loci such as TTC39A upstream and NQO1 downstream, contributing to the local chromatin architecture. The gene itself covers approximately 15 kb, reflecting a compact organization typical of many genes involved in immune . Structurally, MEFV comprises 10 s separated by 9 introns, with exon-intron boundaries defined by consensus splice sites (GT-AG rule) that facilitate precise processing. 1 contains the (UTR) and the beginning of the protein-coding sequence, while exons 2 through 10 complete the coding sequence, with 10 being the largest at approximately 1,668 bp and containing much of the C-terminal domain. Key regulatory elements include a proximal promoter upstream of 1, featuring conserved binding sites for transcription factors p65 and C/EBPβ, which enable inducible expression. The primary transcript, NM_000243.3, measures 3,506 in length, including 46 in the 5' UTR, a 2,346 coding , and a 1,114 3' UTR. generates multiple isoforms, with at least 16 variants reported; a notable one (NM_001198536.2) skips 2, resulting in a frameshift and altered that influences subcellular localization. These variants arise from mutually exclusive usage and are confirmed in leukocyte tissues where MEFV is predominantly expressed. MEFV exhibits strong evolutionary conservation, particularly in its protein-coding regions, reflecting its essential role in innate immunity across mammals. Orthologs show sequence identities of 98.8% with (Pan troglodytes), 72.6% with cow (Bos taurus), 72.2% with (Canis lupus familiaris), and 66.5% with (Mus musculus), indicating divergence primarily in non-coding elements. This conservation underscores the gene's ancient origin, with identifiable homologs in most eutherian mammals but reduced similarity in more distant vertebrates.

Pyrin Protein Characteristics

The pyrin protein, also known as marenostrin, is the product of the MEFV gene located on and consists of 781 with a calculated molecular weight of approximately 86 . It belongs to the tripartite motif () family of proteins, characterized by a modular structure that contributes to its regulatory roles. Pyrin's architecture includes an N-terminal PYRIN spanning residues 1–92, which facilitates protein-protein interactions; a B-box from residues 105–151, involved in zinc coordination and structural stability; a coiled-coil encompassing residues 157–252, which promotes oligomerization; and a C-terminal B30.2/SPRY covering residues 364–781, known for ligand binding specificity. These domains collectively define pyrin's overall fold and potential for intramolecular regulation. Post-translational modifications of pyrin include at specific serine residues, notably Ser-208 and Ser-242, within the central helical scaffold region. These events enable binding to 14-3-3 chaperone proteins, which stabilize pyrin in an inactive conformation by preventing oligomerization and maintaining its solubility. Pyrin exhibits primarily cytoplasmic localization in immune s such as monocytes and neutrophils, where it associates with the , although it can translocate to the in certain types like granulocytes and fibroblasts. This dynamic distribution is governed by nuclear localization signals (residues 419–437) and nuclear export signals, facilitating regulated shuttling between compartments.

Biological Function

Role in Inflammasome Regulation

Pyrin, encoded by the MEFV gene, functions as an intracellular sensor in the innate immune system, detecting modifications to Rho GTPases induced by bacterial toxins and effectors. Specifically, it recognizes the inactivation of RhoA GTPases, such as glucosylation by Clostridium difficile toxins TcdA and TcdB or GAP-mediated inactivation by Yersinia YopE, which disrupts actin cytoskeleton dynamics and triggers pyrin's activation as part of a "guard" mechanism. This sensing pathway allows pyrin to monitor pathogen virulence factors that target host Rho GTPases, distinguishing it from other inflammasome sensors that detect microbial nucleic acids or damage-associated patterns. Upon activation, pyrin assembles into an complex by oligomerizing through its central helical domain and recruiting the adaptor protein apoptosis-associated speck-like protein containing a (ASC) via homotypic interactions between their respective PYRIN domains (PYDs). ASC then facilitates the recruitment and autoactivation of pro-caspase-1 through - interactions, forming large oligomeric structures known as ASC specks. This results in the proteolytic processing of pro-interleukin-1β (pro-IL-1β) and pro-IL-18 into their mature, bioactive forms, as well as cleavage of gasdermin D to induce pyroptotic . The PYD domain of pyrin is critical for these interactions, enabling the propagation of inflammatory signals in myeloid cells like macrophages and neutrophils. Pyrin's activity is tightly regulated by to prevent aberrant . In its resting state, kinases PKN1 and PKN2 phosphorylate pyrin at serine residues 208 and 242 (human numbering), promoting binding to 14-3-3 proteins that sequester pyrin and inhibit inflammasome assembly. Dephosphorylation at Ser242 by protein phosphatase 2A (PP2A) relieves this inhibition, allowing pyrin to oligomerize and initiate the response; conversely, sustained hyperphosphorylation maintains repression. This phosphorylation-dephosphorylation switch integrates environmental cues, such as Rho perturbation, with downstream signaling. Recent studies have shown that pyrin can also be activated by endogenous signals, such as the catabolites and etiocholanolone, which inactivate Rho independently of pathogens, contributing to autoinflammatory conditions. The pyrin pathway intersects with those of and AIM2 inflammasomes, sharing common downstream effectors like ASC and caspase-1 to amplify release during coordinated innate immune responses to diverse threats. While pyrin activation remains independent of in certain toxin-driven scenarios, integrated stimulation of multiple can enhance overall IL-1β production and pathways.

Expression Patterns and Regulation

The MEFV gene exhibits hematopoietic-specific expression, with high levels observed primarily in myeloid cells such as neutrophils, monocytes, and granulocytes including . Among peripheral leukocytes, MEFV mRNA is detectable in neutrophils and at robust levels, while monocytes show varying but generally elevated expression, particularly upon by cytokines. In contrast, expression is lower in non-myeloid immune cells like B and T lymphocytes, and minimal in non-hematopoietic tissues such as fibroblasts and epithelial cells, where it is detected only at trace levels in certain contexts like synovial or skin fibroblasts. This pattern underscores MEFV's role in innate immune responses, as pyrin contributes to assembly in these cell types. During development, MEFV expression is upregulated specifically during myeloid differentiation, marking the commitment to granulocytic and monocytic lineages. In models like the HL-60 promyelocytic cell line, MEFV mRNA becomes detectable within hours of induction toward granulocytic (e.g., with DMSO) and peaks at 48 hours, remaining absent in undifferentiated states. Similarly, monocytic differentiation in cell lines such as U937 and THP-1 triggers robust MEFV transcription, aligning with the gene's restriction to mature myeloid cells involved in inflammation. This temporal regulation ensures pyrin availability coincides with the maturation of immune effector cells. Transcriptional regulation of MEFV is mediated by key elements in its promoter, including binding sites for p65 and CCAAT/enhancer-binding protein beta (C/EBPβ). These factors synergistically activate MEFV in response to proinflammatory stimuli like , with the site at position -163 and C/EBPβ site at -55 within a 243-bp proximal promoter region sufficient for inducible expression. Epigenetic control further modulates MEFV through at the 2 CpG island, where higher methylation levels correlate negatively with mRNA abundance ( -0.29 overall, P=0.041), potentially silencing transcription in a subset of cells. Post-transcriptional regulation of MEFV involves microRNAs (miRNAs) that influence mRNA stability and in the of inflammatory diseases like (FMF). For instance, miR-155 is differentially expressed in FMF patients and contributes to modulating inflammatory pathways, though its direct impact on MEFV transcripts requires further elucidation; related miRNAs like miR-197-3p have been shown to affect downstream components. Additionally, and mechanisms process MEFV transcripts, fine-tuning protein levels in myeloid cells.

Pathophysiology

Common Mutations and Variants

The MEFV , located on 16p13.3, harbors several recurrent that are predominantly missense variants affecting the pyrin protein. Among these, the most frequent are M694V (c.2080A>G in 10), V726A (c.2177T>C in 10), M680I (c.2040G>C in 10), and E148Q (c.442G>C in 2). These account for the majority of pathogenic alleles identified across diverse populations, with over 400 sequence variants reported in total. Carrier frequencies for MEFV variants are elevated in Mediterranean and Middle Eastern populations, approximately 15-25% in , Turks, , and various Jewish subgroups, reflecting historical selective pressures. These high frequencies underscore the gene's prevalence in regions with shared ancestry, though varies. MEFV variants are classified according to American College of and Genomics guidelines, with many categorized as pathogenic or likely pathogenic based on functional evidence and population data from databases like ClinVar. For instance, M694V, V726A, and M680I are consistently deemed pathogenic due to their association with altered protein function, whereas E148Q is often classified as a or likely benign, as it may represent a common polymorphism without strong causality. Benign polymorphisms, such as certain intronic changes, do not disrupt protein integrity and occur at low frequencies globally. At the molecular level, pathogenic MEFV mutations typically induce gain-of-function effects on the pyrin protein, leading to protein misfolding, impaired oligomerization, or disrupted sites. The M694V variant, located in the B30.2 domain encoded by exon 10, exemplifies this by altering homotypic interactions and regulatory binding, thereby destabilizing the protein's autoinhibitory conformation. Similarly, V726A and M680I in the same domain compromise pyrin's ability to sense microbial signals properly, while E148Q in the PYRIN domain may subtly affect binding without severe structural perturbation. These changes collectively impair the protein's regulatory role in assembly. Haplotype analyses reveal strong founder effects for these mutations within specific ethnic groups, indicating ancient origins and population bottlenecks. For example, the M694V mutation is linked to a shared in , Turks, and North African , tracing back approximately 2,500 years, while V726A shows founder patterns in and . E148Q appears on multiple haplotypes across groups, suggesting recurrent origins rather than a single founder event. These associations highlight how and migration have shaped variant distribution.

Impact on Innate Immunity

Mutations in the MEFV gene, which encodes the pyrin protein, disrupt innate immune homeostasis primarily through gain-of-function effects that promote excessive activation, rather than loss-of-function as previously debated. Early uncertainty arose from conflicting models, but functional studies have established that common pathogenic variants, such as M694V, act as hypermorphic alleles that lower the activation threshold of the pyrin , leading to dysregulated inflammatory responses even in heterozygous carriers. This shift favors constitutive or pathogen-independent assembly, amplifying innate immune signaling and contributing to autoinflammatory states. The core mechanism involves failure of inhibitory on pyrin, which normally maintains an inactive state by binding regulatory proteins like 14-3-3. MEFV mutations impair this phosphorylation at key serine residues (e.g., S208 and S242), preventing 14-3-3 association and allowing spontaneous dephosphorylation by kinases such as PKN1/2, thereby enabling unchecked oligomerization and caspase-1 activation. Additionally, these variants disrupt Rho modification sensing and microtubule-dependent regulation, further sensitizing pyrin to low-level stimuli and bypassing safeguards against spurious activation. As a result, innate immune cells like monocytes and neutrophils exhibit heightened responsiveness, perpetuating a cycle of unresolved . Dysregulated cytokine production is a hallmark consequence, with mutations driving excessive release of IL-1β and IL-18 through hyperactive caspase-1 processing. This overproduction sustains , elevating (SAA) levels and promoting secondary amyloid deposition in tissues as a of chronic activation. Such dysregulation not only amplifies acute responses but also fosters a pro-inflammatory milieu that impairs immune resolution. At the cellular level, MEFV mutations enhance activation, increasing surface expression of molecules like CD11b and boosting responsiveness to endotoxins, which exacerbates tissue infiltration during inflammatory episodes. Paradoxically, neutrophils from affected individuals show accelerated , both spontaneous and induced, potentially reflecting a compensatory mechanism to limit damage, though this may contribute to inefficient clearance and prolonged inflammation in inflammatory cells. In heterozygous carriers, who often remain , environmental triggers such as , emotional , or can unmask variant effects by providing secondary signals that tip the balance toward inflammasome activation, highlighting the role of gene-environment interactions in innate immune dysregulation.

Associated Diseases

Familial Mediterranean Fever

(FMF) is an autosomal recessive autoinflammatory disorder primarily caused by biallelic pathogenic variants in the MEFV gene, leading to recurrent episodes of fever and . It manifests as self-limited attacks of affecting the serosal membranes, joints, and , typically beginning in childhood and resolving spontaneously within hours to days. The disease is most prevalent among populations of Mediterranean and Middle Eastern descent, where it imposes a significant burden due to potential complications like if untreated. The core clinical features of FMF include recurrent fevers ranging from 38°C to 40°C, lasting 12 to 72 hours, often accompanied by serositis manifesting as (abdominal pain in ~90% of cases), pleuritis ( in ~45%), or (joint pain in ~75%). Additional symptoms may involve an erysipelas-like on the lower extremities, characterized by tender, red lesions that resolve without scarring. Attacks are frequently triggered by factors such as , , infections, or physical exertion, with episodes recurring every few weeks to months and varying in intensity. Epidemiologically, FMF exhibits a prevalence of 1:200 to 1:1,000 in high-risk ethnic groups, including non-Ashkenazi Jews, Arabs, Turks, Armenians, and other Mediterranean ancestries, with carrier frequencies reaching up to 1:5 in some populations like Armenians. The risk of amyloidosis in untreated individuals varies by ethnicity, genotype, and other factors, ranging from approximately 10% to over 60% in certain populations such as those of Turkish origin. Inheritance follows an autosomal recessive pattern, requiring homozygous or compound heterozygous states for pathogenic MEFV variants to typically cause disease, though incomplete is observed in heterozygotes, leading to milder or atypical presentations in some carriers. relies on the criteria, which require at least one major criterion (recurrent fever ≥38°C with typical attacks in the , chest, joints, or skin) or two minor criteria (incomplete attacks or favorable response to ), often supported by features such as age of onset before 20 years, parental , or ethnic background.

Other Pyrinopathies

Pyrin-associated autoinflammation with neutrophilic dermatosis (PAAND) is a rare autosomal dominant disorder caused by heterozygous mutations in exon 2 of the MEFV gene, such as p.E244K and p.S242R, which disrupt the 14-3-3 binding motif essential for pyrin autoinhibition. Clinically, PAAND manifests with prolonged episodes of fever lasting several weeks, severe neutrophilic dermatoses resembling , arthralgias, myalgias, and elevated inflammatory markers, but notably lacks or typical of other MEFV-related conditions. These features distinguish PAAND from more common recessive forms of MEFV-associated disease, with symptoms often emerging in childhood and showing variable response to . Pyrin-associated periodic fevers (PAPF), also termed atypical pyrin-associated , encompass dominant presentations linked to heterozygous variants in various MEFV exons, including p.M694del ( 10), p.T577A ( 8), p.H478Y ( 5), and p.P373L ( 3). Patients experience recurrent prolonged febrile attacks (1-6 days) accompanied by abdominal or , , and elevated acute-phase reactants, often with late onset around age 18 years and without prominent serosal involvement. Inheritance is typically autosomal dominant, contrasting with recessive patterns in more prevalent MEFV disorders, and these conditions are rarer, with cases reported sporadically across diverse populations such as in , , and the , likely underestimated due to limited genetic screening. Emerging evidence suggests overlaps with Behçet's disease, where MEFV variants like p.M694V and p.M680I increase susceptibility to vascular and intestinal manifestations, potentially exacerbating autoinflammatory features through shared pyrin inflammasome dysregulation. Although no direct causal link establishes Behçet's as a primary pyrinopathy, these variants are enriched in affected cohorts, particularly those with refractory symptoms. Diagnosing these pyrinopathies poses challenges due to phenotypic overlap with other autoinflammatory syndromes, necessitating targeted next-generation sequencing of full MEFV exons rather than limited panels focused on common recessive variants. is crucial, as dominant mutations may not respond uniformly to standard therapies, and can delay recognition in families with mixed genotypes.

Clinical and Research Aspects

Genetic Testing and Diagnosis

for the MEFV gene is a cornerstone in diagnosing (FMF) and related pyrinopathies, typically involving molecular analysis to identify pathogenic variants. Targeted sequencing of specific s, particularly exons 2 and 10, detects approximately 80% of disease-causing mutations in high-prevalence populations, as these regions harbor the majority of common variants such as p.Glu148Gln in exon 2 and p.Met694Val in exon 10. For broader evaluation, next-generation sequencing (NGS) panels that include MEFV alongside other autoinflammatory genes (e.g., , TNFRSF1A, MVK) are increasingly utilized, enabling simultaneous assessment of monogenic periodic fever syndromes and improving diagnostic yield in atypical or overlapping cases. These approaches are recommended for symptomatic individuals meeting clinical criteria like recurrent fever and , with achieving a 75-90% detection rate for biallelic pathogenic variants. Interpretation of MEFV variants follows the American College of Medical Genetics and Genomics (ACMG) guidelines, classifying them as pathogenic, likely pathogenic, uncertain significance, likely benign, or benign based on criteria such as population frequency, computational predictions, and functional evidence. Biallelic pathogenic variants (homozygous or compound heterozygous) strongly support an FMF diagnosis in symptomatic patients, while monoallelic findings require clinical correlation due to potential incomplete . screening is advised in high-risk ethnic groups, such as those of , Turkish, or North descent, where carrier frequencies can reach 1:5-1:7; targeted testing for founder mutations like p.Met694Val is prioritized to inform reproductive counseling. The diagnostic utility of MEFV testing lies in confirming FMF in patients with compatible symptoms, guiding therapy initiation, and assessing prognosis through genotype-phenotype correlations. For instance, homozygosity for p.Met694Val is associated with earlier disease onset, more severe inflammatory attacks, and a sevenfold increased risk of compared to other genotypes, enabling risk stratification for renal monitoring. In up to 25% of FMF cases, only one pathogenic variant is identified, underscoring the need to integrate testing with clinical evaluation using criteria like the score. Limitations of MEFV testing include incomplete , where carriers may remain , complicating interpretation in low-penetrance scenarios or diverse ethnic backgrounds. Ethnic-specific panels are essential, as spectra vary (e.g., higher p.Met694Val in versus p.Val726Ala in ), and standard panels may miss rare alleles outside targeted exons, leading to false negatives in 10-25% of cases. Variants of uncertain significance (VUS) further challenge , often requiring studies or functional assays for reclassification per ACMG criteria. Despite these constraints, testing remains indispensable for precise in clinical practice.

Therapeutic Approaches and Ongoing Research

The standard therapy for MEFV-related disorders, particularly (FMF), is daily prophylaxis at doses of 1-2 mg for adults, which reduces the frequency and severity of inflammatory attacks in approximately 60-95% of patients and prevents secondary in over 90% of adherent individuals. exerts its effects by binding to and inhibiting microtubule , which disrupts assembly and downstream IL-1β production. For the 5-10% of patients who are -resistant or intolerant—often those with homozygous M694V mutations—interleukin-1 (IL-1) inhibitors such as (100 mg daily subcutaneously) or (150 mg every 4-8 weeks) provide effective alternatives, achieving attack-free periods in up to 80% of cases and reducing subclinical . Anti-TNF agents like may be considered for refractory articular manifestations, though evidence is more limited. Ongoing research focuses on personalized and novel interventions to address treatment gaps. Pharmacogenomic studies have identified polymorphisms in the ABCB1 gene, which encodes the transporter, as influencers of efficacy and required dosing; for instance, the C3435T variant correlates with response rates, with TT genotypes associated with better response to . Investigations into microbiome influences reveal gut in FMF patients, characterized by increased pro-inflammatory taxa like and Ruminococcus gnavus, which correlate with disease severity, (e.g., biallelic ), and attack triggers, suggesting potential roles as environmental modifiers of MEFV . Emerging frontiers include gene-based therapies, with preclinical models using / to edit MEFV mutations in induced pluripotent stem cells (iPSCs) for studying pyrin function and IL-1β dysregulation, laying groundwork for potential editing strategies. Clinical trials are advancing biologics for prevention; for example, the KIN-ATTACK-FMF III trial (NCT06336733, estimated start April 2024) evaluates on-demand versus standard care in colchicine-treated patients to reduce attack frequency, while real-world data support IL-6 inhibitors like in slowing progression in resistant cases. Recent analyses as of September 2025 highlight variations in global management practices for colchicine-resistant FMF, emphasizing the increasing use of biologics and the efficacy of in controlling attacks and inflammatory markers. These efforts aim to refine dosing via and explore microbiome modulation, such as , to enhance control.

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