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Chlorophyll b

Chlorophyll b is a photosynthetic primarily found in higher and , where it functions as an accessory light-harvesting molecule that broadens the spectrum of usable sunlight by absorbing wavelengths not efficiently captured by chlorophyll a and transferring the excitation energy to the photosynthetic reaction centers. Its molecular formula is C<sub>55</sub>H<sub>70</sub>MgN<sub>4</sub>O<sub>6</sub>, with a of 907.5 g/mol. It appears as a green solid that is soluble in organic solvents like ethanol and acetone but insoluble in . Structurally, is a , consisting of a ring coordinated to a central magnesium , similar to but distinguished by a formyl (-CHO) group at the C7 position of the instead of a methyl (-CH<sub>3</sub>) group. This substitution shifts its maxima to approximately 450–460 nm in the and 640–650 nm in the orange-red , enabling it to capture photons in these wavelengths with higher efficiency than , whose peaks are at 430 nm and 662 nm. These make essential for optimizing harvesting under varying environmental conditions, such as shaded or dense canopies where and far-red predominate. In photosynthesis, chlorophyll b is predominantly located in the peripheral light-harvesting complexes (LHCs) of I and II in the membranes of chloroplasts, where it binds to proteins like Lhcb1 and facilitates via (FRET) to chlorophyll a molecules in the core or reaction centers. Unlike chlorophyll a, which directly participates in charge separation, chlorophyll b does not form the primary but plays a supportive role in stabilizing LHC assembly and protecting against photooxidative damage by dissipating excess energy. Mutants deficient in chlorophyll b exhibit reduced and altered antenna sizes, underscoring its importance for plant adaptation to light stress and growth in low-light environments.

Chemical Structure and Properties

Molecular Formula and Structure

Chlorophyll b has the molecular formula C_{55}H_{70}MgN_4O_6 and a molecular weight of 907.49 g/. The core structure of chlorophyll b consists of a , a derivative with a porphyrin-like ring system where ring D is partially reduced ( between and C18), and a central magnesium ion (\mathrm{Mg}^{2+}) coordinated to the four atoms. A characteristic feature is the fused five-membered ring (ring V) attached at positions and C15, bearing a carbomethoxy group (-\mathrm{COOCH_3}) at the chiral C13^2 position. Key substituents on the macrocycle include a (-\mathrm{CH=CH_2}) at C3 and an (-\mathrm{CH_2CH_3}) at C8, while the distinguishing feature from is the formyl group (-\mathrm{CHO}) at C7 instead of a (-\mathrm{CH_3}). At , a side chain (-\mathrm{CH_2CH_2COOH}) is esterified with , a branched C_{20} trans-alkene chain specifically (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol, conferring hydrophobicity to the molecule. Chlorophyll b exhibits specific at its three chiral centers in the : (13^2R) at the carbomethoxy-bearing carbon, and (17S,18S) at the D, resulting in a trans orientation between the C13^2- derivative and the C17 side chain. This stereochemical arrangement contributes to the molecule's overall conformation and stability within photosynthetic complexes. The replacement of the C7 methyl with a formyl group in chlorophyll b enhances its polarity due to the carbonyl, increasing solubility in polar solvents compared to chlorophyll a, and subtly alters reactivity, particularly in oxidation and coordination behaviors, while maintaining similar macrocyclic planarity. The structure can be represented textually with standard numbering as follows:
  • Macrocycle: Chlorin with at center; rings A–D, reduced at C17–C18.
  • Ring A: Methyl at C2, at C3.
  • Ring B: Formyl at C7, ethyl at C8.
  • Ring C: Methyl at C12; C13^1: carbonyl in ring V; C13^2: -CH(CH_3)COOCH_3, with (R) config; C15: part of ring V.
  • Ring D: phytol ester at C17, methyl at C18; (S) config at C17 and C18.
  • Meso positions (C5, C10, C15, C20): H (C15 shared with ring V).
For clarity, the key distinguishing elements are highlighted in the description above, as full atomic-level depiction is typically visualized in diagrams.

Spectroscopic Properties

Chlorophyll b exhibits characteristic absorption peaks in the and regions of the , reflecting its role in capturing light for . , in the protein environment of light-harvesting complexes, these peaks are shifted to approximately 475 in the region and 652 in the region, with a notable shoulder in the region around 620–630 that distinguishes it from chlorophyll a. , these peaks occur at approximately 453 () and 642 () in . The molar extinction coefficients are high, on the order of $10^5 M^{-1} cm^{-1}, with specific values of approximately $1.59 \times 10^5 M^{-1} cm^{-1} at the peak (453 ) and $4.0 \times 10^4 M^{-1} cm^{-1} at the peak (642 ) in . These properties follow the Beer-Lambert law, where A = \epsilon c l, with \epsilon as the molar extinction coefficient, c the concentration, and l the path length; for chlorophyll b, the high \epsilon values enable sensitive quantification in extracts. The fluorescence properties of chlorophyll b include emission primarily at 650–660 nm when excited in the absorption bands, such as at 435 nm. Its quantum yield is lower than that of chlorophyll a, approximately 0.12 in diethyl ether compared to 0.25–0.32 for chlorophyll a, attributable to differences in molecular structure influencing non-radiative decay pathways. Chlorophyll b is highly lipophilic owing to its phytyl tail, rendering it insoluble in but readily soluble in organic solvents such as acetone and , which are commonly used for . It degrades under exposure to light and oxygen through pheophytinization, involving the loss of the central magnesium ion to form pheophytin b, which shifts the absorption and alters color from green to olive-brown. Environmental factors like polarity and influence the spectroscopic bands of chlorophyll b. In more polar solvents like , the absorption peaks exhibit a red shift compared to non-polar solvents such as , due to effects on the formyl group; for instance, the red peak shifts from ~645 nm in to ~652 nm in . Acidic accelerates pheophytinization, broadening and shifting bands, while alkaline conditions may induce minor blue shifts in the Q-band.

Occurrence and Distribution

In Vascular Plants

Chlorophyll b is abundant in the leaves of vascular plants, particularly angiosperms and gymnosperms, where it typically comprises 20-25% of the total content alongside the dominant . This proportion supports efficient light harvesting in terrestrial environments, with chlorophyll b contributing to the expansion of the absorption spectrum beyond that of chlorophyll a alone. In angiosperms, such as (Fagus sylvatica) and (), chlorophyll b plays a key role in functions, as evidenced by its into photosynthetic complexes. Similarly, gymnosperms like ginkgo () exhibit comparable chlorophyll profiles, underscoring its widespread distribution across seed-producing vascular plants. Within vascular plants, chlorophyll b is predominantly localized in the light-harvesting complexes (LHCs) associated with , embedded in the membranes of chloroplasts. These complexes, particularly LHCII, bind chlorophyll b to facilitate energy capture and transfer, with spectroscopic studies confirming its distinct excitation properties in these structures. This localization enhances the by positioning chlorophyll b in peripheral antenna arrays that funnel absorbed energy to the reaction centers. The typical chlorophyll b:a in C3 vascular plants ranges from 0.2 to 0.5, determined through spectrophotometric analysis of extracts, reflecting a balanced integration for optimal light utilization. The abundance of chlorophyll b varies by plant type and environmental conditions, with higher ratios observed in shade-adapted vascular to broaden light capture in low-irradiance settings. In shade-tolerant , chlorophyll b can reach up to 30% of total chlorophyll, lowering the a:b to as low as 2.5:1 or below, which aids acclimation to habitats. Conversely, sun-exposed maintain lower chlorophyll b proportions, with ratios closer to 3:1, prioritizing efficiency under high . This in chlorophyll b distribution exemplifies physiological adaptations in vascular for diverse terrestrial niches.

In Algae and Cyanobacteria

Chlorophyll b is present in of the division , where it functions similarly to its role in vascular plants as an in light-harvesting complexes. In these organisms, chlorophyll b typically comprises 20-30% of the total chlorophyll content, with a common chlorophyll a to b ratio of approximately 3:1, enabling efficient energy capture in both freshwater and marine habitats. This pigment is essential for the photosynthetic apparatus of diverse species, such as , which dominate various aquatic ecosystems. In certain cyanobacteria, known as prochlorophytes, chlorophyll b occurs alongside chlorophyll a in a prokaryotic context, marking a unique adaptation among oxygenic photosynthesizers. Genera like Prochlorococcus and Prochloron lack phycobilins, the typical light-harvesting pigments of other cyanobacteria, and instead rely on chlorophyll b for photon absorption. Prochlorococcus, a dominant picocyanobacterium in oligotrophic oceans, exhibits chlorophyll a/b ratios ranging from 0.6 to 13 across strains, allowing up to near-equimolar levels of chlorophyll b in some deep-water adapted forms. The symbiotic Prochloron, first identified in 1975 as the initial prokaryote containing chlorophyll b, resides within marine ascidians and shares structural similarities with plant chlorophyll b. Chlorophyll b levels vary across algal groups, with notably lower or absent concentrations in lineages derived from red algae, such as cryptophytes, while it is entirely lacking in most red (Rhodophyta) and brown (Phaeophyceae) algae, which utilize chlorophyll c as accessory pigments instead. Ecologically, chlorophyll b facilitates adaptation to the spectral quality of underwater light, particularly the blue-green wavelengths (450-500 nm) that penetrate deeper water columns, enhancing light harvesting for prochlorophytes in open-ocean environments and green algae in coastal or freshwater settings. This distribution underscores chlorophyll b's role in enabling primary productivity in stratified aquatic systems where red and far-red light are attenuated.

Role in Photosynthesis

Light Absorption and Energy Transfer

Chlorophyll b serves as an accessory pigment in the light-harvesting complexes (LHCs) of plants, primarily absorbing light in the blue region of the spectrum, with significant absorption extending from approximately 400 to 500 nm, which complements the absorption profile of chlorophyll a and broadens the overall light-capturing capacity of the photosynthetic apparatus. This extended blue absorption is particularly advantageous for capturing wavelengths enriched in shaded or canopy-filtered environments, such as forest understories, where direct sunlight is limited. Upon photon , chlorophyll b enters an excited (S1), and the excitation energy is efficiently transferred to molecules within the LHCs through (), a non-radiative process governed by dipole-dipole coupling between the pigments. This transfer occurs on timescales with efficiencies typically exceeding 90%, often approaching 100%, due to favorable overlap between the of chlorophyll b and the of . Seminal studies, such as those by Duysens, first demonstrated this directional energy migration from accessory chlorophylls like b to the reaction center-associated . Experimental evidence from fluorescence quenching studies supports the role of chlorophyll b as a peripheral pigment, where its is rapidly quenched upon transfer of excitation to chlorophyll a, confirming the high efficiency of this process . Two-dimensional electronic has further revealed coherent in these transfers, underscoring the quantum of the energy funneling in LHCs. The adaptive significance of chlorophyll b lies in its ability to enhance under variable light conditions, particularly in low-light or shade-adapted scenarios, by optimizing energy capture from the depleted blue and ensuring rapid delivery to the photosynthetic reaction centers. This mechanism allows to maintain productivity in heterogeneous light environments without requiring structural changes to the core .

Integration in Photosystems

Chlorophyll b is primarily associated with (PSII) through its integration into the II (LHCII), the major antenna system that forms trimers to capture light energy. Within each LHCII , chlorophyll b occupies specific binding sites that enable its coordination with and , such as and neoxanthin, forming a network essential for efficient excitation energy collection. The typically includes approximately 6 chlorophyll b molecules per LHCII , alongside 8 and 4 , allowing for optimized light absorption in the blue-green spectrum and subsequent transfer to the PSII reaction center. Cryo-electron microscopy (cryo-EM) structures of the PSII-LHCII supercomplex reveal the precise positions of chlorophyll b within LHCII trimers, positioned at the to facilitate directional energy funneling toward the PSII core, including the reaction center chlorophyll pair P680. These models demonstrate how chlorophyll b's excitonic coupling with creates a that directs excitation energy inward, enhancing the overall of PSII . This arrangement supports rapid energy transfer from chlorophyll b to within the antenna, minimizing losses and balancing excitation between . The integration of LHCII, rich in chlorophyll b, is dynamically regulated by light-induced phosphorylation of its constituent proteins, which modulates the migration of LHCII trimers between PSII and (PSI) to balance electron flow under varying conditions. This state transition mechanism ensures adaptive distribution, with phosphorylated LHCII associating more readily with PSI during excess PSII excitation. Mutational studies in , such as the Arabidopsis chlorina-1 mutants defective in chlorophyll b synthesis due to disruptions in the chlorophyllide a oxygenase , exhibit pale phenotypes and reduced PSII efficiency, underscoring chlorophyll b's critical role in antenna assembly and light harvesting. These mutants display diminished LHCII accumulation, leading to lower photochemical yields and impaired photosynthetic performance under normal growth conditions.

Biosynthesis and Metabolism

Synthetic Pathway

The biosynthesis of chlorophyll b branches from the chlorophyll a pathway at the chlorophyllide a stage, where the C7 is oxidized to a formyl group through a series of oxygenation reactions. This pathway shares initial steps with chlorophyll a synthesis, beginning from magnesium , which is methylated to form Mg-protoporphyrin IX monomethyl ester by the Mg-protoporphyrin IX methyltransferase (CHLM). Subsequent cyclization and steps lead to divinyl protochlorophyllide a, which is then reduced to chlorophyllide a by light-dependent protochlorophyllide (LPOR). At this point, the pathway diverges for chlorophyll b production. The key enzymatic step in chlorophyll b formation is catalyzed by chlorophyllide a oxygenase (CAO), a Rieske-type non-heme iron-dependent monooxygenase that performs two sequential C-H bond activations using molecular oxygen (O₂) and α-ketoglutarate as cosubstrates. CAO first converts chlorophyllide a to 7-hydroxymethyl chlorophyllide a (an intermediate), followed by further oxidation to chlorophyllide b. This reaction requires electron transfer, often supported by ferredoxin or non-native reductases in vitro. Chlorophyllide b is then esterified with phytol by chlorophyll synthase (CHLG) to yield mature chlorophyll b. CAO activity and expression are tightly regulated to balance chlorophyll a and b levels. In Arabidopsis thaliana, the CAO gene is upregulated by light exposure, with mRNA levels increasing rapidly upon transfer from dim to moderate light (e.g., from 5 to 60 μmol·m⁻²·sec⁻¹), correlating with enhanced chlorophyll b accumulation under shade conditions. Feedback inhibition occurs via chlorophyll a levels; accumulation of chlorophyll a suppresses CAO expression, while chlorophyll b-deficient states elevate it approximately twofold, preventing overproduction of light-harvesting complexes. Overexpression of CAO in transgenic plants increases chlorophyll b synthesis and lowers the chlorophyll a/b ratio, particularly in low-light environments. Genetic studies in the 1990s provided key evidence for the pathway, with the CAO gene cloned from Arabidopsis thaliana and shown to restore chlorophyll b synthesis in mutants. Chlorophyll b-less mutants such as cbs1cbs6 harbor deletions in the CAO locus, while point mutations (e.g., V274E) or null alleles (e.g., 213-bp deletion in ch1-3) abolish enzyme function, resulting in no detectable chlorophyll b and impaired light-harvesting complex assembly. Complementation with wild-type CAO genomic fragments confirms its essential role.

Degradation Processes

Chlorophyll b degradation primarily occurs through a catabolic pathway initiated by specific enzymatic s, ensuring the is converted to forms compatible with the broader chlorophyll breakdown process. The initial step involves the of the formyl group at the C7 , catalyzed by chlorophyll b reductases encoded by the NYC1 (non-yellow coloring 1) and NOL (NYC1-like) genes in . These enzymes convert chlorophyll b to 7-hydroxymethyl chlorophyll a, which is further reduced to by 7-hydroxymethyl chlorophyll a reductase (HCAR), thereby channeling chlorophyll b into the a degradation route before dephytylation or magnesium removal. This chlorophyll b-specific initiation prevents accumulation of potentially toxic intermediates and is essential for efficient turnover. Following conversion to chlorophyll a equivalents, the pathway proceeds with dephytylation mediated by chlorophyllase, yielding chlorophyllide a, although in senescence contexts, alternative routes involving pheophytinase (PPH) on Mg-depleted forms may predominate. Magnesium removal then occurs via stay-green (SGR) proteins, producing pheophorbide a from chlorophyllide a. The key ring-opening step is catalyzed by pheophorbide a oxygenase (PaO), which preferentially acts after conversion to pheophorbide a but can process pheophorbide b, leading to the formation of red chlorophyll catabolite (RCC) and subsequent linear tetrapyrroles such as primary fluorescent chlorophyll catabolites (pFCCs). These are further modified to non-toxic, colorless non-fluorescent chlorophyll catabolites (NCCs) by reductases and isomerases, facilitating safe export to the vacuole. The structural vulnerability of the formyl group in chlorophyll b necessitates its prior reduction to avoid stalled degradation. Degradation of chlorophyll b is triggered under conditions such as leaf , herbivory, and environmental stresses including , resulting in up to 90% loss of total pigments to prevent photooxidative damage. During in vascular , these processes dismantle light-harvesting complexes, with NYC1 and NOL expression upregulated to prioritize chlorophyll b breakdown ahead of . Ecologically, this enables remobilization, particularly of magnesium and , from senescing tissues to support reproductive growth or storage organs, enhancing plant fitness under resource-limited conditions.

History and Research

Discovery and Isolation

The recognition of chlorophyll b as a distinct began in the mid-19th century with spectroscopic observations suggesting that the green coloring matter in consisted of more than one component. In 1864, George Gabriel Stokes demonstrated through and studies that was a mixture of at least two green pigments, based on differences in their spectral properties when extracted from leaves. This challenged the prevailing view of chlorophyll as a single entity, though proved challenging due to the pigments' instability and similarity. Spectroscopic distinctions were further advanced by Henry Clifton Sorby in 1873, who identified two absorption bands corresponding to distinct chlorophyll components. In 1879, Felix Hoppe-Seyler employed gentle solvent methods to isolate while avoiding harsh chemical treatments that had previously degraded samples; he prepared crystalline derivatives like phylloporphyrin and confirmed their relation to blood pigments through chemical analysis, though full separation of the two green components remained elusive. Early isolation techniques relied on from macerated leaves, followed by with solvents like or to yield green bands, but purity remained low and the pigments were often confused or contaminated with degradation products. A major advance came in 1906 when Mikhail Tswett introduced adsorption chromatography, passing alcohol extracts of plant leaves through columns to resolve pigments into colored bands; this separated the two chlorophylls as distinct green fractions, alongside yellow , confirming their individuality without chemical alteration. Richard Willstätter built on this in the early 1900s, refining isolation via repeated solvent partitioning and crystallization, isolating pure and b by 1907 and naming them based on their absorption maxima—chlorophyll a at longer wavelengths and b at shorter, bluish-green ones—thus dispelling misconceptions of their identity. His work, culminating in the 1915 , established their magnesium-containing structures and variable ratios in plants. In , quantitative assays emerged to measure b alongside a, using on acetone or extracts to determine ratios via specific absorption coefficients; these revealed b comprising 20-30% of total in shade-adapted , varying with conditions and species, and provided tools for ecological studies of .

Structural Determination

The structural determination of chlorophyll b began in the early with partial elucidations through degradation studies. Richard Willstätter, in his pioneering work from 1905 to 1915, isolated chlorophyll b as a distinct and proposed its as C55H70O6N4Mg, based on and degradation products like methylphytol and derivatives, though the full macrocyclic arrangement remained unclear. Hans Fischer advanced this significantly in the 1930s and 1940s, building on his 1930 Nobel Prize-winning synthesis of hemin and porphyrins, which provided insights into tetrapyrrole frameworks. By 1940, Fischer's group proposed the complete gross structure of chlorophyll b, confirming it as a chlorin derivative with a formyl group (-CHO) at the C7 position of ring B, distinguishing it from chlorophyll a (which has a methyl group there), and including a phytol ester chain at C17. This was achieved through exhaustive degradation, reconstitution from pyrrole subunits, and comparison with synthetic analogs, resolving earlier ambiguities in ring saturation and side-chain configurations. Mid-20th-century spectroscopic techniques further validated structure. UV-Vis spectroscopy revealed distinct absorption maxima for chlorophyll b at around 645 nm, attributable to the conjugated formyl group, while in the 1950s confirmed the molecular weight and fragmentation patterns consistent with the C55H70O6N4Mg formula. (NMR) studies in the 1960s, including fully deuterated analogs, provided precise assignments for proton environments, verifying the C7 formyl substitution and chain length (C20H39OH) while addressing post-1950s debates on V saturation and the exact positioning of the two additional hydrogens in the chlorin . Structural refinements continued with crystallographic methods. In the 1990s, electron crystallography of the light-harvesting /b-protein complex (LHCII) at 3.4 Å resolution revealed chlorophyll b's integration within the protein scaffold, confirming its orientation and coordination to histidine residues. Higher-resolution of LHCII in 2004 at 2.72 Å provided atomic details of the formyl group interactions. Post-2010 cryo-electron microscopy (cryo-EM) structures, such as those of plant supercomplexes at resolutions below 3 Å, have further contextualized chlorophyll b's binding sites and conformational dynamics in native assemblies.

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