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Factor XI

Factor XI (FXI) is a plasma glycoprotein and zymogen of the serine protease factor XIa (FXIa), which plays a key role in the blood coagulation cascade by activating factor IX (FIX) to amplify thrombin generation and support hemostasis.^[1] Unlike most coagulation factors, FXI originated evolutionarily from a duplication of the KLKB1 gene, which encodes plasma prekallikrein, and it circulates primarily as a noncovalent complex with high molecular weight kininogen (HMWK).^[2]^[3] Structurally, FXI is a 160 kDa disulfide-linked homodimer composed of two identical 607-amino acid subunits, each featuring four tandem apple domains (A1–A4) in the heavy chain and a C-terminal trypsin-like serine protease catalytic domain in the light chain.^[1] This dimeric configuration is unique among coagulation zymogens and facilitates efficient activation and substrate binding, including interactions with platelets via the A3 domain.^[1] FXI activation occurs through proteolytic cleavage at the Arg369–Ile370 bond, primarily by factor XIIa (FXIIa) in the contact pathway, thrombin in a feedback mechanism, or autoactivation by FXIa itself, with enhanced efficiency on activated platelet surfaces.^[1] Functionally, it bridges the intrinsic (contact) and extrinsic coagulation pathways, contributing to sustained thrombin production particularly in tissues prone to fibrinolysis, such as the oral cavity and urinary tract, and it also activates other factors like FV, FVIII, and FX while inhibiting tissue factor pathway inhibitor (TFPI).^[4]^[1] Clinically, congenital FXI deficiency, also known as hemophilia C, results in mild to moderate bleeding tendencies that vary unpredictably with plasma levels and are more prevalent in Ashkenazi Jewish populations (1 in 450 for severe cases), yet it is associated with reduced thrombotic risk.^[1] Elevated FXI levels correlate with increased thrombosis risk, positioning FXI as a promising therapeutic target for anticoagulants that minimize bleeding complications, with ongoing trials of inhibitors like antisense oligonucleotides showing efficacy in preventing venous thromboembolism.^[4]

Discovery and Molecular Biology

Historical Discovery

Factor XI deficiency was first identified in 1953 by Robert L. Rosenthal, Oscar H. Dreskin, and Nathan Rosenthal, who described a novel hemophilia-like bleeding disorder in three members of a Philadelphia family of Ashkenazi Jewish descent, characterized by prolonged clotting times due to the absence of a previously unrecognized plasma component they termed plasma thromboplastin antecedent (PTA).^[5] The family exhibited mild hemorrhagic tendencies, particularly after dental extractions, with laboratory findings showing normal prothrombin times but markedly prolonged partial thromboplastin times (PTT) that could be corrected by mixing with normal plasma, distinguishing it from classical hemophilia A or B.^[6] In the late 1950s and early 1960s, as part of efforts to standardize the chaotic nomenclature of blood coagulation factors, the International Committee for the Nomenclature of Blood Clotting Factors assigned the Roman numeral designation Factor XI to PTA, integrating it into the emerging cascade model of hemostasis. This renaming occurred amid broader recognition of the intrinsic coagulation pathway, where Factor XI was positioned downstream of Factor XII (Hageman factor).^[7] The role of Factor XI in the intrinsic pathway was clarified in 1961 through studies by Oscar D. Ratnoff and Earl W. Davie, who demonstrated that activated Factor XII (Factor XIIa) directly converts Factor XI to its active form, Factor XIa, thereby amplifying thrombin generation in vitro.^[8] Key experiments utilizing PTT assays further linked PTA (Factor XI) deficiency to prolonged clotting in affected individuals, particularly in Ashkenazi Jewish populations, where early screenings revealed a higher incidence compared to the general population.^[9] Factor XI deficiency affects approximately 1 in 1 million individuals worldwide, but carrier rates reach about 8% among Ashkenazi Jews due to founder mutations such as the type II (Glu117Stop) and type III (Phe283Leu) variants in the F11 gene.^[10] These mutations, originating from common ancestors, underscore the genetic basis established through population studies in the 1970s and 1980s that traced the disorder's prevalence to historical bottlenecks in Jewish communities.^[11]

Gene and Synthesis

Factor XI is encoded by the F11 gene, located on the long arm of human chromosome 4 at cytogenetic band 4q35.2.^[12] The gene spans approximately 23 kb and comprises 15 exons, with exon 1 encoding the 5' untranslated region and the signal peptide.^[13] The promoter region upstream of exon 1 contains binding sites for hepatocyte nuclear factor 4α (HNF-4α), a transcription factor critical for driving liver-specific expression of F11.^[14] The protein is synthesized primarily in hepatocytes as a zymogen precursor, consisting of a single polypeptide chain of 607 amino acids, including a signal peptide that is cleaved during processing.^[15] Minor extrahepatic synthesis occurs in megakaryocytes, where an alternatively spliced F11 transcript produces a platelet-associated form of factor XI lacking the initial 22 amino acids of the pro-piece.^[15] Post-translational modifications are essential for the protein's structure and function, including N-linked glycosylation at four sites (Asn72, Asn108, Asn432, and Asn473) that account for about 5% of the subunit mass, and formation of disulfide bonds that create a homodimeric molecule with interchain and intrachain linkages.^[16] In plasma, factor XI circulates at concentrations of approximately 4 to 6 μg/mL (30 to 34 nM as dimers), maintained by hepatic production, with a biological half-life of about 52 hours. Among genetic variants, two founder mutations are prevalent in Ashkenazi Jewish populations: the type II mutation (Glu117Stop, c.403G>T), a nonsense variant leading to a truncated protein and quantitative deficiency, and the type III mutation (Phe283Leu, c.901T>C), a missense change causing a dysfunctional but antigenically detectable protein and qualitative deficiency.^[17]

Biochemistry and Physiology

Protein Structure

Factor XI circulates in plasma as a homodimer consisting of two identical subunits linked by a disulfide bond, with a total molecular mass of 160 kDa; each subunit has a mass of 80 kDa and comprises 607 amino acids.^[18] The protein is synthesized as a single-chain zymogen that circulates in plasma; upon activation, it is cleaved at Arg369-Ile370 to form the two-chain active form FXIa, with the heavy chain containing the regulatory domains and the light chain housing the catalytic domain.^[16] The domain organization of each Factor XI subunit features four tandem apple domains (A1–A4) at the N-terminus, each approximately 90–91 amino acids long, followed by a C-terminal serine protease catalytic domain of the trypsin-like family.^[1] The apple domains form a compact, disk-like planar structure approximately 60 Å in diameter and 20 Å thick, stabilized by three intradomain disulfide bonds per domain that connect six conserved cysteine residues, creating a β-barrel fold with seven antiparallel β-strands supporting a single α-helix.^[16] These domains mediate key protein-protein interactions, such as the binding of Factor XII to the A4 domain, and the binding of heparin and platelet glycoprotein Ibα to the A3 domain.^[1] Dimerization is primarily covalent via an interchain disulfide bond between Cys321 residues in the A3 domains of each subunit, supplemented by non-covalent interfaces involving hydrophobic contacts (e.g., Leu284, Ile290, Tyr329) and a salt bridge (Lys331-Glu287) primarily at the A4 domain interface.^[16] The catalytic domain, connected to the apple domains by an interchain disulfide bond (Cys362–Cys482), encompasses residues 370–607 and features a classic serine protease active site with the catalytic triad His413, Asp462, and Ser557, which enables proteolytic activity upon activation.^[16] In the zymogen form, the active site is inaccessible and lacks enzymatic activity due to improper alignment of the catalytic residues; activation involves proteolytic cleavage that generates a new N-terminus (Ile370) which inserts into the activation pocket, forming a salt bridge with Asp194 to reposition the oxyanion hole and expose the active site.^[18] The overall architecture of the zymogen is described as a "cup and saucer" configuration, with the catalytic domain resting atop the saucer-like apple domain disk, as revealed by the crystal structure (PDB: 2F83).^[19] Subsequent structures of the activated form, such as those from 2011 (PDB: 3LK6, 3LK7), highlight conformational rearrangements in the catalytic domain upon activation, including repositioning of loops near the active site to facilitate substrate binding.^[20] More recent cryo-EM structures (2023; PDB: 8D9Q, 8D9R) have elucidated the binding of the A3 domain of FXI to domain 6 of HMWK, confirming key residues for complex formation.^[21]

Activation and Function in Coagulation

Factor XI (FXI) circulates in plasma as a zymogen and is activated to its serine protease form, FXIa, primarily through proteolytic cleavage by factor XIIa in the intrinsic pathway of coagulation or by thrombin in a feedback amplification mechanism.^[16]^[22] This activation occurs via cleavage after Arg369 (or Arg70 in the mature chain numbering), which separates the light and heavy chains and exposes the active site in the catalytic domain.^[16]^[22] The process is facilitated on negatively charged surfaces, such as exposed subendothelial tissues or platelet polyphosphates, enhancing efficiency during hemostasis initiation.^[4] Once activated, FXIa plays a central role in propagating the coagulation cascade by activating factor IX (FIX) to FIXa, which then assembles with activated factor VIII (FVIIIa), calcium ions, and phospholipids to form the intrinsic tenase complex.^[16]^[22] This complex efficiently converts factor X to factor Xa, amplifying thrombin generation and fibrin clot formation.^[4] The kinetics of FIX activation by FXIa exhibit a Michaelis constant (Km) of approximately 500 nM and a turnover number (kcat) of about 8 s⁻¹, reflecting moderate catalytic efficiency suited for sustained amplification rather than rapid initiation.^[23] FXIa contributes to an amplification loop wherein thrombin, generated via the extrinsic pathway, further activates FXI on activated platelet surfaces, sustaining coagulation even after initial contact activation wanes.^[16]^[4] This process is augmented by high-molecular-weight kininogen (HMWK) and prekallikrein, which localize FXI to platelets and endothelium, with polyphosphates increasing the rate of thrombin-mediated activation by up to 3000-fold.^[4] Binding interactions are mediated by the apple domains in the heavy chain: the A3 domain interacts with platelet glycoprotein Ib (GPIbα), while other apple domains (A1 and A4) facilitate adhesion to endothelial laminin and HMWK.^[16]^[22] Although integral to the intrinsic pathway, FXI also supports the extrinsic pathway by sustaining thrombin production and inactivating tissue factor pathway inhibitor (TFPI), thereby linking both arms of coagulation.^[4] However, FXI is dispensable for normal hemostasis in certain contexts; for instance, FXI knockout mice exhibit reduced thrombus formation but maintain effective clot formation without spontaneous bleeding, underscoring its role as an amplifier rather than an essential initiator.^[16]^[22]^[4]

Clinical Significance

Deficiency and Bleeding Disorders

Factor XI deficiency, also known as hemophilia C or Rosenthal syndrome, is an autosomal recessive bleeding disorder characterized by reduced levels or dysfunctional activity of factor XI, a key component of the intrinsic coagulation pathway. It manifests in partial (cross-reacting material positive, CRM+) or severe (CRM-) forms, where CRM+ indicates the presence of non-functional protein and CRM- denotes its complete absence. Unlike hemophilias A and B, which are X-linked, factor XI deficiency affects both males and females equally and typically presents with milder bleeding tendencies. The clinical symptoms primarily involve mild mucocutaneous bleeding, such as epistaxis, menorrhagia, easy bruising, and excessive bleeding after dental extractions or circumcision, with rare occurrences of hemarthroses or deep tissue hematomas. Notably, the severity of bleeding does not consistently correlate with residual factor XI activity levels, which can range from 1% to 70%; some individuals with near-normal activity may experience significant hemorrhage, particularly in high-risk surgical sites or with concurrent use of antifibrinolytic agents. Spontaneous bleeding is uncommon, and the disorder often remains asymptomatic until challenged by trauma or surgery. Diagnosis begins with a prolonged activated partial thromboplastin time (aPTT) in routine coagulation screening, followed by specific factor XI activity assays using clotting-based or chromogenic methods to quantify functional levels; severe deficiency is defined as activity below 1%. Antigen assays distinguish CRM+ from CRM- variants, while genotyping identifies common mutations, such as the type II/Star mutation in Ashkenazi Jewish populations. Family history and ethnic background guide testing, as the disorder's prevalence is highest among Ashkenazi Jews (homozygous incidence of 1:190, heterozygous carrier rate 8.1%), with elevated rates also in French Basques (approximately 1 in 4,000), and Iraqi Jews. Overall global prevalence is estimated at 1:1,000,000 for severe cases, though mild forms may be underdiagnosed.^[24] Management focuses on preventing or treating bleeding episodes rather than routine prophylaxis, unlike in hemophilias A and B. Fresh frozen plasma (10-15 mL/kg) remains the mainstay for perioperative coverage, providing both factor XI and volume replacement, while antifibrinolytic agents like tranexamic acid are used adjunctively for mucosal bleeding. Plasma-derived factor XI concentrates offer targeted replacement but are limited in availability and not universally approved.

Role in Thrombosis

Elevated levels of Factor XI (FXI), particularly above 120% of normal activity, are associated with an increased risk of venous thromboembolism (VTE), ischemic stroke, and myocardial infarction (MI). Meta-analyses of case-control and cohort studies have demonstrated a positive correlation between high FXI levels and cardiovascular events, with odds ratios ranging from 1.63 to 1.77 (95% CI: 1.02-2.68) for MI and overall events, and hazard ratios of 1.34 (95% CI: 1.09-1.64) in prospective cohorts. For VTE specifically, levels in the upper decile (approximately >132 IU/dL) nearly double the risk, as evidenced by population-based studies showing persistent elevation amplifies this effect. Prospective epidemiological data from the Atherosclerosis Risk in Communities (ARIC) cohort further link FXI antigen levels exceeding 100 IU/dL to heightened incidence of ischemic stroke and VTE, independent of traditional risk factors. FXIa, the activated form of FXI, contributes to thrombus stability primarily through amplification of the coagulation cascade and enhancement of platelet function, distinguishing its prothrombotic role from a lesser impact on hemostasis compared to other factors like VIII or IX. Upon activation—often by thrombin in a feedback loop—FXIa sustains thrombin generation by activating Factor IX (FIX), thereby promoting fibrin formation and clot reinforcement under high shear conditions typical of arterial thrombosis. Additionally, FXIa interacts with platelet surfaces via glycoprotein Ib and annexin A5, protecting it from inhibitors and augmenting FIX activation on platelets, which bolsters thrombus growth and resistance to fibrinolysis without substantially impairing bleeding control. Genetic variations in the F11 gene, such as the promoter polymorphism rs2289252 (also denoted as -21918G>A), are linked to elevated FXI levels and increased thrombosis susceptibility. Carriers of the rs2289252 T allele exhibit higher plasma FXI activity and a significantly elevated odds ratio for deep vein thrombosis (approximately 1.5-2.0), as confirmed in case-control studies of inherited thrombophilia. Paradoxically, Noonan syndrome is characterized by reduced FXI levels (mean 60-70% activity), which typically confer protection against thrombosis, yet the condition carries elevated cardiovascular risks due to congenital heart defects that promote embolic events independently of FXI. Animal models underscore FXI's preferential role in pathologic thrombosis over physiologic hemostasis. In murine and primate models of arterial injury, FXI-deficient animals or those treated with FXI inhibitors exhibit markedly reduced occlusive thrombus formation—up to 50-70% decrease in time to occlusion—while maintaining normal tail bleeding times and wound healing. These findings highlight FXIa's contribution to arterial thrombus propagation via FIX and platelet pathways, without compromising hemostatic plug formation. Recent cohort studies as of 2025 continue to position FXI as a promising biomarker for atrial fibrillation (AF)-related stroke risk. Analyses from large registries, including genetic proxies for FXI activity, show that elevated FXI levels correlate with a 1.2-1.5-fold higher incidence of cardioembolic stroke in AF patients, supporting its integration into risk stratification models beyond CHA2DS2-VASc scores.

Inhibitors and Therapeutics

Inhibition of Factor XI (FXI) represents an emerging strategy in anticoagulation therapy, targeting the intrinsic coagulation pathway to decouple antithrombotic effects from hemostatic impairment. Unlike traditional inhibitors of Factor Xa or thrombin, which broadly suppress coagulation and increase bleeding risk, FXI inhibition primarily attenuates thrombus propagation while preserving the extrinsic pathway's role in hemostasis, potentially reducing thrombotic events without compromising bleeding control.^[25] This approach is particularly promising for patients with atrial fibrillation (AF), venous thromboembolism (VTE), or those at high bleeding risk, such as the elderly or those with cancer.^[26] Monoclonal antibodies targeting FXI or FXIa have advanced to late-stage clinical evaluation. Abelacimab, a fully human IgG1 monoclonal antibody that binds and inhibits FXI, has demonstrated substantial reductions in thrombotic events with a favorable bleeding profile. In a Phase 2 VTE prevention study following total knee arthroplasty, abelacimab achieved an 80% relative risk reduction in VTE compared to enoxaparin, alongside low rates of major or clinically relevant nonmajor bleeding.^[27] The AZALEA-TIMI 71 Phase 2b trial in AF patients further showed that monthly subcutaneous doses of abelacimab (90 mg or 150 mg) reduced major or clinically relevant nonmajor bleeding by 51% to 74% versus rivaroxaban, with consistent benefits across age groups including those over 75 years.^[28] Phase 3 trials, such as LILAC-TIMI 76 for cancer-associated VTE, are ongoing to confirm efficacy and safety.^[29] Small-molecule inhibitors of activated FXI (FXIa) offer oral administration for broader use. Asundexian (BAY 2433334), developed by Bayer, selectively inhibits FXIa and showed promise in secondary stroke prevention in Phase 2 trials like PACIFIC-Stroke, where it reduced covert brain infarcts without increasing bleeding when added to antiplatelet therapy.^[30] However, the Phase 3 OCEANIC-AF trial in AF patients was terminated in 2024 due to futility, as asundexian failed to demonstrate noninferiority to apixaban for preventing stroke or systemic embolism (1.3% vs. 0.4% event rate), though it was associated with fewer major bleeding events (0.7% vs. 1.6%).^[31] The Phase 3 OCEANIC-STROKE trial for secondary stroke prevention, completed in October 2025, did not demonstrate a significant reduction in recurrent ischemic stroke compared to placebo (RR 1.64, 95% CI 0.51-5.25), though bleeding risk remained low.^[32]^[33] Milvexian (JNJ-70033093), from Janssen, is another oral FXIa inhibitor in Phase 3 development through the LIBREXIA program, assessing its efficacy in preventing recurrent ischemic stroke or non-central nervous system embolism post-acute ischemic stroke or high-risk transient ischemic attack, with completion expected in 2026; early data indicate no excess bleeding risk when combined with antiplatelets.^[34] However, the LIBREXIA-ACS trial was discontinued in November 2025 after an interim analysis indicated it was unlikely to meet its primary efficacy endpoint.^[35] Antisense oligonucleotides (ASOs) provide another modality by reducing hepatic synthesis of FXI. IONIS-FXIRx (also known as ISIS 416858 or BAY 2306001, licensed to Bayer), an subcutaneous ASO, significantly lowered FXI levels in Phase 2 trials. In patients undergoing elective total knee arthroplasty, a single preoperative dose reduced VTE incidence by approximately 70% to 90% compared to enoxaparin, with minimal impact on bleeding.^[36] Another Phase 2 study in end-stage renal disease patients on hemodialysis confirmed dose-dependent FXI reduction up to 90% with monthly dosing, without increased bleeding or thrombotic events.^[37] Despite these advances, challenges remain in implementing FXI inhibitors clinically. Optimal dosing for long-term prophylaxis varies by agent class—monthly for antibodies and ASOs, daily for small molecules—and requires balancing FXI suppression (typically 70-90% for efficacy) with hemostatic needs, particularly in surgical settings where reversal strategies are under development.^[25] Monitoring poses difficulties, as activated partial thromboplastin time (aPTT) prolongation is inconsistent and insensitive to FXIa-specific inhibition, necessitating specialized assays like anti-FXI activity or thrombin generation tests that are not widely available.^[38] Future directions include oral FXI/FXIa inhibitors in preclinical and early development to improve convenience, alongside Phase 3 outcomes to establish their role in diverse thrombotic indications.^[39]

References

[1]
Structure and function of factor XI - PMC - NIH
Factor XI (FXI) is the zymogen of a blood coagulation protease, factor XIa (FXIa), that contributes to hemostasis through activation of factor IX (FIX).
[2]
Biology of factor XI - PMC - NIH
Unique among coagulation factors, the coagulation factor XI (FXI) arose through a duplication of the gene KLKB1, which encodes plasma prekallikrein.
[3]
Entry - *264900 - COAGULATION FACTOR XI; F11 - (OMIM.ORG)
Factor XI is a glycoprotein that circulates in plasma as a noncovalent complex with high molecular weight kininogen (HMWK; see 612358).
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[PDF] NEW HEMOPHILIA-LIKE DISEASE
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[PDF] FACTOR XI DEFICIENCY AND ITS MANAGEMENT - WFH
With the discovery that coagulation factor XI (FXI:C) can be activated by thrombin, the physiological role of FXI:C in blood coagulation became clearer.
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Entry - #612416 - FACTOR XI DEFICIENCY - OMIM - (OMIM.ORG)
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[12]
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Sep 9, 2025 · a novel mutation, a C-to-G transition at position 1394 in exon 12 in the FXI gene (F11 c. 1394 C>G). This transition resulted in a missense ...Missing: chromosome | Show results with:chromosome
[13]
Organization of the Gene for Human Factor XI - PubMed
Nov 17, 1987 · Factor XI (plasma thromboplastin antecedent) is a plasma glycoprotein that participates in the early phase of blood coagulation. The gene ...Missing: et al structure
[14]
Cloning and characterization of the human factor XI gene promoter
Factor XI is the zymogen of a plasma protease produced primarily in liver that is required for normal blood coagulation. We cloned approximately 2600 base ...Missing: Kato | Show results with:Kato
[15]
Molecular cloning of platelet factor XI, an alternative splicing product ...
May 29, 1998 · Platelet factor XI is an alternative splicing product of the factor XI gene, localized to platelets and megakaryocytes but absent from other blood cells.Missing: hepatocytes | Show results with:hepatocytes
[16]
An Update on Factor XI Structure and Function - PubMed Central
Factor XI (FXI) is the zymogen of a plasma protease, factor XIa (FXIa), that contributes to thrombin generation during blood coagulation.
[17]
The two common mutations causing factor XI deficiency in Jews ...
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Structural and functional features of factor XI - PMC - NIH
(A) A factor (F) XI subunit contains four apple domains (1–4) that form a planar structure on which the catalytic domain (CD) rests. High molecular weight ...Missing: triad | Show results with:triad
[19]
Crystal structure of the factor XI zymogen reveals a pathway for ...
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[20]
High-resolution crystal structures of factor XIa coagulation ... - NIH
Two structures of factor XIa in complex with small synthetic inhibitors are reported. These are the first structures of factor XIa complexed to small non-basic ...
[21]
Biology of factor XI | Blood | American Society of Hematology
Apr 11, 2024 · FXI deficiency was first discovered in 1953 in patients who experienced excessive bleeding after tooth extraction.Introduction · A1 domain · A3 domain · Serine protease domain
[22]
Pharmacology and Clinical Development of Factor XI Inhibitors
Mar 13, 2023 · This article reviews the rationale, pharmacology, results of medium or small phase 2 studies, and future perspectives of drugs inhibiting FXI.
[23]
Factor XI Inhibitors: A New Horizon in Anticoagulation Therapy - PMC
Feb 2, 2024 · IONIS-FXIRX/FXI-ASO (ISIS 416858) ... So far, results from two phase II trials comparing factor XI inhibition with DOACs have been unveiled.
[24]
Abelacimab Demonstrates "Overwhelming" Efficacy vs Rivaroxaban ...
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Asundexian versus Apixaban in Patients with Atrial Fibrillation
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ISIS-FXIRx inhibits the production of Factor XI, a coagulation factor produced in the liver that is involved in the formation of clots. In this study, Isis will ...
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Phase 2 Study of the Factor XI Antisense Inhibitor IONIS-FXIRx in ...
Antisense reduction of factor XI (FXI) with IONIS-FXI Rx is a novel strategy that may safely reduce the risk of thrombotic events.Missing: 416858 | Show results with:416858
[33]
The current landscape of factor XI inhibitors - ScienceDirect.com
Maximum plasma concentration was observed after 3 h, and the terminal half-life ranged from 8 to 14 h. Steady-state plasma concentrations are reached within ...
[34]
the emerging role of factor XI inhibitors across different settings
May 23, 2024 · Preclinical studies in animal models have been instrumental in understanding the role of FXI in thrombosis. Notably, mice genetically modified ...