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Nucleoside-diphosphate kinase

Nucleoside-diphosphate kinase (NDPK), also known as NME protein, is a family of ubiquitous enzymes that catalyze the reversible transfer of a γ-phosphate group from nucleoside triphosphates (NTPs), such as ATP, to nucleoside diphosphates (NDPs), such as GDP, via a phosphohistidine intermediate, thereby maintaining cellular nucleotide homeostasis.^[1] This housekeeping function ensures the synthesis of NTPs essential for energy transfer, nucleic acid biosynthesis, and various metabolic processes across all domains of life.^[2] NDPKs are encoded by the NME gene family, with humans expressing ten isoforms divided into two groups: Group I (NME1–4), which are highly conserved and typically localize to the cytosol or mitochondria, and Group II (NME5–9), which are more divergent and often associated with ciliated structures or specific cellular compartments.^[1] The enzymes form oligomeric structures, predominantly homohexamers or heterooligomers, with each subunit featuring a conserved NDPK domain comprising a central four-stranded antiparallel β-sheet flanked by α-helices.^[3] For instance, human NDPK-C (NME4) assembles as a homohexameric trimer of dimers, with a molecular weight of approximately 103 kDa, and exhibits nucleotide-induced conformational changes in its active site to facilitate substrate binding.^[4] Beyond nucleotide metabolism, NDPKs play diverse roles in cellular signaling and physiology, including suppression of tumor metastasis—particularly NME1 (NDPK-A), identified in the 1980s as the first metastasis suppressor gene—and regulation of membrane remodeling through interactions with proteins like dynamin and OPA1.^[1] They also participate in histidine phosphorylation of targets such as G protein subunits and ion channels, influencing signal transduction, development, and pathologies like cancer and heart failure.^[4] Discovered in the 1950s for their role in nucleotide synthesis, NDPKs continue to be studied for their structural dynamics and therapeutic potential in diseases involving nucleotide imbalance.^[1]

Structure

Overall Architecture

Nucleoside-diphosphate kinases (NDPKs) in eukaryotes typically assemble as homo-hexamers, consisting of six identical subunits arranged with dihedral (D3) symmetry. Each subunit comprises approximately 152 amino acids and has a molecular weight of about 17 kDa, as exemplified by human NME1. This oligomeric structure is essential for the enzyme's stability and catalytic efficiency, with intersubunit interfaces facilitating the formation of the active sites at the dimer interfaces within the hexamer.^[3]^[5] The conserved fold of NDPK subunits features an N-terminal α-helix, a central four-stranded antiparallel β-sheet forming the core, and a C-terminal helical domain that extends beyond the main α/β domain. This ferredoxin-like α/β sandwich architecture is highly preserved across species, with the β-sheet (strands β1–β4) flanked by α-helices (α1–α4) that contribute to nucleotide binding. The active site, located in a cleft between adjacent subunits, includes a strictly conserved histidine residue—His118 in human NME1—that serves as the nucleophile for phosphotransfer during catalysis.^[3]^[6]^[7] High-resolution structural studies have further elucidated this architecture; for instance, a 1.25 Å crystal structure of human NDPK-C (NME4) in complex with ADP reveals the hexameric assembly and detailed nucleotide interactions within the active site, confirming the conserved fold and oligomeric contacts. In prokaryotes, NDPKs predominantly form homotetramers, though some assemble as hexamers, reflecting evolutionary adaptations while maintaining the core subunit fold.^[4]^[3]

Isoforms and Localization

Nucleoside-diphosphate kinases (NDPKs) exhibit isoform diversity across organisms, enabling specialized subcellular localizations and adaptations. In humans, ten isoforms are encoded by the NME1-NME10 genes, with NME1-4 (Group I) being the most extensively studied due to their conserved catalytic roles and broad expression. These Group I isoforms share 58-88% sequence identity, while Group II isoforms (NME5-10) diverge significantly (22-44% identity with Group I). Group II isoforms are more structurally divergent, often monomeric or dimeric rather than hexameric, and are typically associated with ciliated structures or specific compartments like cilia and flagella. NME1 and NME2 are primarily cytosolic and associate with the plasma membrane, while NME3 localizes to the outer mitochondrial membrane via an N-terminal hydrophobic anchor that facilitates binding to phosphatidic acid. NME4 targets the mitochondrial intermembrane space and inner membrane through an N-terminal mitochondrial targeting sequence, as elucidated in structural and localization studies from 2021.^[8]^[9]^[10] Prokaryotic homologs, such as the Ndk protein in Escherichia coli, are encoded by a single gene and form tetramers, contrasting with the hexameric assemblies typical of eukaryotic NDPKs. The E. coli Ndk monomer consists of 143 amino acids and adopts a conserved ferredoxin-like fold, assembling into stable tetramers that support nucleotide homeostasis in the cytosol. Sequence conservation across species is approximately 50% identity between bacterial and human NDPKs, reflecting evolutionary pressures on the catalytic core while allowing for organism-specific variations. For instance, human NME1 and NME2 differ by only 16-18 surface residues, which influence heterooligomer formation without altering the shared hexameric scaffold.^[3]^[11]^[12] In plants, NDPKs are classified into four phylogenetic types (I-IV), with distinct subcellular targeting to meet organelle-specific demands. Type I isoforms, such as NDPK1, predominate in the cytosol and are highly expressed in meristematic tissues. Type III isoforms localize to the mitochondrial intermembrane space, while type IV isoforms are predicted to associate with the endoplasmic reticulum, though proteomic evidence has identified NDPK variants in peroxisomes, supporting roles in oxidative metabolism. Unique domains, such as the N-terminal extensions in mitochondrial isoforms like NME3 and NME4, enable precise targeting, whereas membrane association in cytosolic isoforms like NME2 occurs via protein-protein interactions rather than lipid modifications. This isoform diversity underscores NDPKs' adaptation to compartmentalized cellular environments across kingdoms.^[13]^[14]^[15]

Function

Catalytic Mechanism

Nucleoside-diphosphate kinase (NDPK) catalyzes the reversible transfer of a phosphate group from a nucleoside triphosphate (NTP) donor to a nucleoside diphosphate (NDP) acceptor, represented by the general reaction NTP + NDP' ⇌ NDP + NTP', such as ATP + GDP ⇌ ADP + GTP. This phosphotransfer reaction maintains nucleotide pools in cells and requires Mg²⁺ as a cofactor to complex with the substrates. The enzyme operates via a ping-pong bi-bi mechanism, where the active-site histidine residue (His117 in many isoforms) is first phosphorylated by the donor NTP, forming a high-energy phosphohistidine intermediate (E-His-P). This intermediate then transfers the phosphate to the acceptor NDP, regenerating the free enzyme.^[16] The phosphohistidine is unstable and tautomerizes between Nδ and Nε forms, facilitating rapid transfer.^[16] The reaction equilibrium constant is near 1 (typically 0.15–0.5 across species), allowing the enzyme to favor the synthesis of less abundant NTPs based on cellular concentrations.^[16] Kinetic studies reveal a high turnover rate, with k_cat values around 1000–6000 s⁻¹ for natural substrates, indicating efficient catalysis.^[16] The enzyme exhibits a broad pH optimum of 7–9, consistent with its physiological activity in cellular environments.^[17] Recent investigations have uncovered an additional capability of NDPK isoform NME1 to catalyze its own self-oligophosphorylation, adding multiple phosphate units (up to a hexaphosphate chain) using ATP, in a process dependent on His118 and confirmed by mass spectrometry analysis of biochemical samples and cell lysates.^[18]

Physiological Roles

Nucleoside-diphosphate kinase (NDPK) plays a crucial role in maintaining balanced intracellular nucleotide pools by catalyzing the transfer of phosphate groups from nucleoside triphosphates to nucleoside diphosphates, ensuring sufficient supplies for essential biosynthetic processes such as DNA and RNA synthesis, as well as lipid and carbohydrate metabolism.^[19] This housekeeping function is vital for cellular homeostasis, preventing imbalances that could lead to mutagenic effects or impaired replication and transcription.^[20] In plants, for instance, NDPK contributes to the distribution of carbon resources between starch and cellulose synthesis by regulating nucleotide availability.^[21] Beyond pool maintenance, NDPK generates guanosine triphosphate (GTP) locally, which supports heterotrimeric G-protein signaling by facilitating GDP-to-GTP exchange on Gα subunits, thereby modulating downstream pathways involved in cell proliferation and differentiation.^[22] Additionally, NDPK-produced GTP promotes microtubule polymerization, influencing cytoskeletal dynamics and cellular motility through interactions with tubulin and associated proteins.^[23] Recent research highlights NDPK's involvement in promoting GDP and ADP metabolism via transphosphorylation, where it converts ATP + GDP to ADP + GTP, indirectly stimulating oxidative phosphorylation in mitochondria by enhancing respiratory rates and reducing membrane potential.^[24] This process requires NDPK's cooperation with the electron transport chain and is inhibited by oxidative phosphorylation blockers, underscoring its regulatory impact on energy production.^[24] NDPK isoforms also function as ATP-regulated carriers, where ATP-mediated phosphorylation at a histidine residue prevents binding to substrates like acyl-CoAs, while dephosphorylation by nucleoside diphosphates enables it, linking NDPK activity to the cellular NTP/NDP ratio and metabolic flux control.^[25] Furthermore, NDPK modulates the phosphoproteome under stress conditions, altering phosphorylation patterns on proteins involved in key pathways; for example, in cyanobacteria, elevated NDPK levels enhance tolerance to oxidative, salt, and radiation stresses by influencing photosynthetic efficiency and electron transport.^[26]

Regulation

Phosphorylation by AMPK

AMP-activated protein kinase (AMPK), a key cellular energy sensor, phosphorylates nucleoside-diphosphate kinase (NDPK) at specific serine residues, such as Ser120 (and nearby sites including Ser122) in the NME1 isoform (also known as NDPK-A), during conditions of low energy availability marked by an elevated AMP/ATP ratio.^[27] This post-translational modification occurs primarily through the α1 subunit of AMPK and has been observed both in vitro and in vivo, for instance in hepatic cells subjected to metabolic inhibitors like phenformin or oligomycin.^[28] Phosphorylation at these sites significantly inhibits NDPK's phosphotransferase activity, thereby favoring the accumulation of nucleoside diphosphates (NDPs) over their phosphorylation to triphosphates. This reduction in activity disrupts the enzyme's role in maintaining nucleotide pools, conserving ATP by preventing unnecessary energy expenditure on non-essential nucleotide regeneration.^[27] At the molecular level, the inhibitory effect arises from a phosphoserine switch mechanism. Structural analyses, including crystal structures of wild-type human NDPK-A and its S120G mutant in complex with ADP, show no major conformational changes near the catalytic histidine (His118) in the mutant form. These findings, established in studies up to 2006, indicate that the S120G mutation (linked to neuroblastoma) does not alter the active site structure, with the inhibition likely occurring through other dynamic effects of phosphorylation. No major structural updates have been reported through 2025.^[29]^[27] In physiological contexts, AMPK-mediated phosphorylation of NDPK is activated during metabolic stress, such as hypoxia or glucose deprivation, to prioritize ATP preservation for critical survival processes like ion homeostasis and protein synthesis. This regulatory mechanism ensures cellular homeostasis by curtailing NDPK's contribution to energy-intensive nucleotide synthesis, thereby enhancing resilience to energy deficits.^[27]

Other Regulatory Mechanisms

Nucleoside-diphosphate kinases (NDPKs), also known as NME proteins, exhibit enhanced activity through interactions stabilized by ATP, which promotes intersubunit interactions and increases enzymatic efficiency in phosphate transfer in the hexameric form. Studies using surface plasmon resonance have shown that ATP facilitates allosteric modulation of Nm23-H1 (NME1) activity, particularly in the context of small molecule binding to the C-terminal region.^[30] Post-translational modifications further fine-tune NDPK function, including ubiquitination that targets the protein for proteasomal degradation and acetylation that influences subcellular localization. Deacetylation of NDPK-A (NME1) at lysine 56 exposes recognition sites for the E3 ubiquitin ligase SCF-FBXO24, accelerating its degradation and reducing steady-state levels under specific cellular conditions. Conversely, acetylation of NDPK-D (NME4) at sites such as K45, K72, and K91, regulated by acetyltransferases and deacetylases like SIRT1, promotes its retention in mitochondria and cytosol, enhancing its role in intermembrane lipid transfer and cell survival; increased acetylation can also influence apoptosis. Recent phosphoproteome-integrated studies (as of 2024) map dynamic modifications, including NME1 phosphorylation at Ser120, Ser122, and Ser125 by kinases like CKI/CKII, which enables binding to PRUNE1 and affects cell motility in cancer contexts. Additionally, coenzyme A (CoA) binding to NME1 under cellular stress inhibits its activity, linking lipid metabolism to metastasis suppression (as of 2021).^[31]^[32]^[33]^[34] Under oxidative stress, NDPK oligomers undergo dissociation, leading to reduced catalytic activity. Elevated reactive oxygen species induce disulfide bond formation between cysteine residues, particularly in NME1 hexamers, causing disassembly into dimers and monomers that impair phosphate transfer efficiency. This oxidative-induced dissociation destabilizes the hexamer interface, providing a rapid regulatory switch to modulate NDPK function in redox-challenged environments.^[35]

Prokaryotic Roles

(p)ppGpp Metabolism

In bacteria, nucleoside-diphosphate kinase (Ndk) plays a critical role in (p)ppGpp metabolism by catalyzing the phosphotransfer reaction that equilibrates nucleoside diphosphate and triphosphate pools. Specifically, Ndk transfers the terminal phosphate from ATP to GDP, yielding ADP and GTP in a reversible equilibrium:

\text{ATP} + \text{GDP} \rightleftharpoons \text{ADP} + \text{GTP}

This activity provides the essential GTP substrate required by RelA and SpoT synthetases for (p)ppGpp production during the stringent response.^[36]^[37] During nutrient starvation, elevated (p)ppGpp levels trigger the stringent response, and Ndk ensures the availability of GTP to sustain alarmone synthesis, thereby maintaining cellular adaptation to stress. Ndk is proposed to complete the (p)ppGpp cycle by regenerating GTP from GDP produced upon (p)ppGpp hydrolysis, preventing depletion of nucleotide pools critical for this pathway. In Escherichia coli and Bacillus subtilis, this function links Ndk directly to stress tolerance, as disruptions in nucleotide homeostasis impair the response.^[37]^[36] Historical analyses, including seminal work on the stringent response, have demonstrated that ndk mutants exhibit disrupted (p)ppGpp cycles, with altered alarmone accumulation under starvation conditions. For instance, in E. coli and related Salmonella typhimurium, ndk mutants show dramatically elevated (p)ppGpp levels alongside depressed UDP pools, indicating metabolic imbalance that affects stringent response efficacy. Similar disruptions occur in B. subtilis ndk mutants, where impaired GTP supply hinders proper (p)ppGpp homeostasis during amino acid limitation. These pre-2020 findings underscore Ndk's indispensable role, with no major mechanistic updates reported since, though its contributions to stress tolerance remain a focus of nucleotide metabolism research.^[38]^[39]

Bacterial Growth and Stress Response

In Escherichia coli, mutants lacking nucleoside-diphosphate kinase (Ndk) display imbalanced dNTP pools, with elevated levels of dCTP and dGTP, leading to a mutator phenotype characterized by increased spontaneous mutation rates, though growth rates remain normal under standard conditions.^[40] This imbalance arises because Ndk normally maintains nucleotide homeostasis by catalyzing the transfer of phosphate from ATP to NDP substrates, and its absence shifts reliance to alternative kinases that inefficiently balance pools during replication.^[41] In certain stress contexts involving DNA damage, Ndk deficiency can suppress the SOS response by altering nucleotide pools, potentially affecting cellular adaptation and growth under combined metabolic defects.^[42] Ndk contributes to oxidative stress tolerance in cyanobacteria through modulation of the phosphoproteome. A 2024 study on Nostoc sp. PCC 7120 demonstrated that overexpression of Ndk increases protein phosphorylation levels, modulating photosynthetic parameters (such as lower efficiency under low light) while enhancing resilience to abiotic stresses, including oxidative damage from reactive oxygen species.^[26] Specifically, elevated Ndk activity is associated with phosphorylation of key regulatory proteins involved in electron transport and antioxidant defense, thereby improving survival under hydrogen peroxide exposure. This mechanism highlights Ndk's role beyond nucleotide synthesis, acting as a histidine kinase-like modulator in prokaryotic stress signaling.^[43] In pathogenic bacteria, Ndk supports biofilm formation and virulence. For instance, in Mycobacterium tuberculosis, secreted Ndk attenuates host NADPH oxidase activity, inhibiting phagosome maturation and promoting intracellular survival, which enhances overall pathogenicity.^[44] Similarly, Ndk mutants in Aeromonas veronii exhibit reduced biofilm production and impaired adhesion to host cells, underscoring its contribution to community formation and infection establishment in diverse pathogens.^[45] Pre-2020 studies on bacterial Nm23-like genes, such as ndk in Pseudomonas aeruginosa, further reveal their function in growth regulation, where mutants show delayed proliferation under nutrient-limiting conditions due to disrupted energy metabolism and signaling.^[46]

Eukaryotic Roles

In Animals

In animals, nucleoside-diphosphate kinases (NDPKs) are encoded by the NME gene family, with humans expressing ten isoforms, of which NME1 through NME4 are the primary catalytically active forms responsible for nucleotide homeostasis.^[1] NME1 and NME2 predominate in the cytosol, where they maintain balanced pools of nucleoside triphosphates by transferring phosphate from ATP to nucleoside diphosphates, supporting essential cellular energy demands.^[47] NME3 localizes primarily to the mitochondrial outer membrane, while NME4 localizes to mitochondria, highlighting isoform-specific compartmentalization that enables tailored functions in animal physiology.^[48]^[49] NME1 and NME2 play key roles in regulating cell proliferation and differentiation in mammalian tissues. During embryogenesis, NME2 expression correlates with proliferative and differentiative phases, influencing developmental patterning.^[50] In neural development, NME1 is essential for neural patterning and cell fate determination, ensuring proper neuronal organization.^[5] Additionally, NME2 facilitates G-protein signaling by locally supplying GTP to heterotrimeric G-proteins, thereby modulating downstream pathways in cell signaling and adhesion.^[51] These functions extend to metabolic regulation, as NME1 and NME2 prevent excessive fatty acid accumulation in the liver under high-fat conditions by inhibiting de novo lipogenesis and promoting epigenetic responses that protect against lipid overload.^[52] Mitochondrial NME4 contributes to organelle dynamics in animal cells, interacting with dynamin-like proteins such as OPA1 to regulate mitochondrial fusion and fission. A 2021 study demonstrated that NME4 acts as a suppressor of metastatic potential by maintaining mitochondrial network integrity, linking its NDPK activity to cristae organization and bioenergetic stability during cellular stress.^[53] This isoform-specific role underscores NDPKs' involvement in mitochondrial homeostasis, distinct from the cytosolic nucleotide-balancing functions of NME1 and NME2.

In Plants

In plants, nucleoside-diphosphate kinase (NDPK) exists as four isoforms, designated NDPK-I through NDPK-IV, each exhibiting distinct subcellular localizations that underpin their specialized physiological roles. NDPK-I is predominantly cytosolic and serves as the primary isoform for maintaining general nucleotide homeostasis by catalyzing the transfer of phosphate groups between nucleoside diphosphates and triphosphates, ensuring balanced energy distribution across cellular processes. This housekeeping function is critical for overall metabolic equilibrium, with NDPK-I accounting for the majority of NDPK activity in various plant tissues.^[13] NDPK-II is localized to the chloroplasts, where it provides essential nucleotide triphosphates to support photosynthetic metabolism. This isoform facilitates the local synthesis of ATP and GTP, which are vital for sustaining the high-energy demands of the Calvin-Benson cycle and electron transport during light reactions. By localizing to the chloroplast stroma, NDPK-II helps mitigate nucleotide imbalances that could impair carbon fixation and photosynthetic efficiency under varying light conditions.^[54] NDPK-III is localized to the mitochondrial inter-membrane space, where it supports nucleotide homeostasis for mitochondrial respiration and facilitates the re-phosphorylation of imported nucleoside diphosphates to triphosphates for cellular export.^[55]^[56] NDPK-IV is targeted to peroxisomes, contributing to photorespiration and the cellular response to oxidative stress. In peroxisomes, which are central to the photorespiratory pathway, NDPK-IV maintains nucleotide pools necessary for enzymatic reactions involving glycolate oxidation and serine synthesis, thereby supporting carbon recovery during conditions favoring photorespiration, such as high temperatures. Additionally, it aids in oxidative stress management by ensuring GTP and ATP availability for antioxidant defenses, helping to counteract reactive oxygen species generated in these organelles. Detailed mechanistic insights into NDPK-IV's peroxisomal functions remain limited in studies post-2020.^[15]^[57] Expression of plant NDPKs, particularly isoforms I and II, is upregulated in response to drought and salt stress, enabling sustained energy maintenance amid abiotic challenges. This induction enhances nucleotide recycling and ATP production, bolstering cellular resilience and preventing metabolic disruptions caused by osmotic imbalance or ion toxicity. For instance, overexpression of NDPK-II in transgenic plants confers improved tolerance to both drought and salinity by promoting redox homeostasis and stress signaling pathways. Pre-2020 research highlights these adaptive roles, with ongoing gaps in peroxisomal-specific responses under such stresses.^[58]

Pathological Implications

Cardiovascular Diseases

Nucleoside-diphosphate kinase B (NDPK-B), encoded by the NME2 gene, plays a protective role in cardiac function through its regulation of nucleotide pools and G-protein signaling. Deficiency in NDPK-B disrupts these processes, leading to cardiomyopathy characterized by impaired contractility and structural abnormalities. In zebrafish models, morpholino-mediated knockdown of NME2 results in severe reductions in cardiac contractility due to downregulation and mislocalization of heterotrimeric G-proteins, which are essential for cAMP production and myocardial performance.^[59] Similarly, in NDPK-B knockout mice, endothelial-specific deficiency triggers activation of the hexosamine biosynthesis pathway (HBP), promoting endothelial dysfunction and subsequent cardiac hypertrophy with diastolic impairment, highlighting ATP and GTP imbalances that exacerbate energy deficits in cardiomyocytes.^[60] These findings underscore how NDPK-B maintains ATP homeostasis and G-protein activation, preventing dilated cardiomyopathy phenotypes observed in genetic ablation studies.^[61] NDPK-B also influences vascular pathologies such as atherosclerosis by modulating nucleotide-dependent signaling in endothelial cells. In endothelial cells, NDPK-B sustains GTP levels necessary for proper G-protein coupled receptor signaling, which regulates vascular tone and prevents inflammatory responses. Loss of NDPK-B function impairs this nucleotide regulation, leading to endothelial activation and HBP upregulation, which contributes to oxidative stress and plaque formation in atherosclerosis models.^[62] This endothelial dysfunction is associated with disrupted angiogenic balance through altered G-protein interactions.^[63] The AMPK-NDPK axis is critical in ischemic heart disease, where energy stress amplifies vulnerabilities. During ischemia, activated AMPK phosphorylates NDPK-B at serine-120, directly inhibiting its kinase activity and thereby limiting nucleotide interconversion, which worsens ATP/GTP imbalances and exacerbates metabolic deficits in hypoxic cardiomyocytes.^[27] This inhibition, while aiding short-term AMPK-mediated energy conservation, hinders long-term recovery by impairing G-protein signaling required for adaptive cAMP responses in the stressed heart.^[22] Clinical observations support these mechanistic insights, with reduced association of NME2 with G-protein complexes noted in end-stage failing human hearts, correlating with disrupted G-protein signaling and diminished contractility. Studies from human cardiac tissue biopsies up to 2017 demonstrate that NME2 downregulation of G_s associations shifts oligomeric associations toward inhibitory G_i proteins, contributing to systolic dysfunction in heart failure patients.^[22] No substantial updates to these patterns have emerged in major cohorts from 2020 to 2025, though recent mouse models reinforce the translational relevance of NDPK-B loss in cardiomyopathy progression.^[60]

Cancer

Nucleoside-diphosphate kinase (NDPK), encoded by NME genes, exhibits dual roles in cancer, acting as both a metastasis suppressor and, paradoxically, a promoter in certain contexts. Classically identified as metastasis suppressors, NME1 and NME2 demonstrate that high expression levels correlate with reduced metastatic potential in various tumors, a finding established through studies from the 1990s and 2000s showing decreased NME1 expression in aggressive breast, melanoma, and colorectal cancers.^[64] This suppressive function is independent of primary tumor growth inhibition, primarily through mechanisms like histidine kinase activity that modulate cell motility and signaling pathways such as MAPK/ERK.^[65] Further supporting the antimetastatic role, NME4, a mitochondrially localized isoform, suppresses metastasis by maintaining organelle integrity, including regulation of mitochondrial fission and fusion dynamics essential for cellular homeostasis during tumor dissemination. In a 2021 study, knockdown of NME4 in breast cancer models enhanced metastatic colonization in vivo, while its overexpression preserved mitochondrial function and reduced lung metastasis, marking NME4 as the first mitochondrial metastasis suppressor.^[66] However, NDPK isoforms can paradoxically promote cancer progression in specific malignancies. In neuroblastoma, NDPK-A (NME1) overexpression enhances metastasis, as demonstrated in NB69-derived cell lines where stable transfectants showed increased invasion and orthotopic xenograft tumor dissemination in mice, contrasting its suppressive role elsewhere.^[67] This context-dependent promotion extends to proliferation, where NDPK overexpression in cancers like prostate and hematological malignancies drives nucleotide synthesis by generating NTPs, fueling DNA replication and cell division to support rapid tumor growth.^[68]^[69] Recent investigations reveal additional layers of NDPK regulation in cancer, including self-oligophosphorylation of NME1, where the enzyme autophosphorylates on histidine residues using ATP, forming labile oligophosphate chains detectable in tumor cell lysates. This 2025 study in Nature Chemistry confirmed the process via mass spectrometry in biochemical and cellular contexts, suggesting it modulates NME1's enzymatic and signaling functions to influence tumor progression.^[70]

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Cold-sensitive mutant of Salmonella typhimurium defective in ...
The mutant contains only 2% of the enzyme activity found in the parent, and the heat lability of this activity is 10 times that from the parent at 33 C. Mutant ...Missing: text | Show results with:text
[39]
The relationship between dNTP pool levels and mutagenesis in an ...
Jul 22, 2008 · It is presumed that the imbalance in dNTP pool levels is responsible for the mutator phenotype of an E. coli ndk mutant. A human homologue of ...Missing: slow filamentation
[40]
Escherichia coli strains (ndk) lacking nucleoside diphosphate kinase ...
We show here that in E. coli strains lacking NDP kinase high levels of mispairs are generated, but most of these are corrected by the mismatch-repair system.
[41]
Suppression of the E. coli SOS response by dNTP pool changes
Mar 30, 2015 · The ndk and dcd single-mutant strains also display a mutator phenotype for this target, 6.5-fold for ndk and 2.5-fold for dcd. Importantly ...
[42]
Phosphoproteome modulation by nucleoside diphosphate kinase ...
This is the first report on a direct correlation between Ndk levels, phosphorylation status of proteins and stress tolerance in any cyanobacteria.
[43]
Mycobacterium tuberculosis Nucleoside Diphosphate Kinase ...
Jul 18, 2013 · Our in vitro and in vivo data revealed that Ndk contributes significantly to Mtb virulence via attenuation of NADPH oxidase-mediated host innate immunity.Results · Inhibition Of Nox2 Activity... · Associated DataMissing: biofilm | Show results with:biofilm
[44]
Nucleoside Diphosphate Kinases (ndk) reveals a key role in ...
The ability of biofilm formation, the adhesion and invasion to EPC cells significantly decreased for the mutant strain (△-ndk). •. Ndk gene has affected the ...
[45]
Nucleoside diphosphate kinase: role in bacterial growth, virulence ...
Mar 1, 2002 · Nucleoside diphosphate kinase (Ndk) is an important enzyme that generates nucleoside triphosphates (NTPs) or their deoxy derivatives by ...
[46]
Nuclear functions of NME proteins - PMC - NIH
Oct 23, 2017 · NME1 and NME2 have been shown to translocate to the nucleus, although they lack a canonical nuclear localization signal. Binding of NME1 and ...
[47]
The mitochondrial nucleoside diphosphate kinase (NDPK-D/NME4 ...
The homohexameric complex emerged as a protein with multiple functions in bioenergetics and phospholipid signaling.
[48]
Nme protein family evolutionary history, a vertebrate perspective
The Nme family, previously known as Nm23 or NDPK, is involved in various molecular processes including tumor metastasis and some members of the family, ...
[49]
Targeting altered Nme heterooligomerization in disease? - PMC
Previous work from our laboratory and others linked Nme2 to heterotrimeric G protein activation, again acting as NDPK for GTP supply, as protein histidine ...
[50]
Nucleoside diphosphate kinases 1 and 2 regulate a protective liver ...
Sep 6, 2023 · We show that NME1 additionally binds AcCoA and that ligand recognition involves a unique binding mode dependent on the CoA/AcCoA 3′ phosphate.Missing: neural | Show results with:neural
[51]
The mitochondrially-localized nucleoside diphosphate kinase D ...
In the present study, we identify the mitochondrial NDPK-D (NME4, NM23-H4) as a novel metastasis suppressor. NDPK-D mutations invalidating either the catalytic ...Missing: organelle | Show results with:organelle
[52]
Clues to the functions of plant NDPK isoforms - PubMed
Jun 26, 2014 · This review describes the five nucleoside diphosphate kinase (NDPK) genes found in both model plants Arabidopsis thaliana (thale cress) and ...Missing: peroxisomal | Show results with:peroxisomal
[53]
[PDF] Arabidopsis nucleoside diphosphate kinase-2 as a plant GTPase ...
Nucleoside diphosphate kinase (NDPK) catalyzes the transfer of the γ-phosphate from nucleoside triphosphates to nucleo- side diphosphates, using a ping-pong ...Missing: II III IV
[54]
In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes ...
The major protein constituents of plant peroxisomes are well characterized, whereas only a few low-abundance and regulatory proteins have been reported to date.Results · Two Kinases With Putative... · Literature CitedMissing: IV | Show results with:IV
[55]
Interaction of SOS2 with Nucleoside Diphosphate Kinase 2 ... - NIH
SOS2 was found to interact with the H2O2 signaling protein nucleoside diphosphate kinase 2 (NDPK2) and to inhibit its autophosphorylation activity. A sos2-2 ...Results · Sos2 Inhibits Ndpk2... · Discussion
[56]
Interaction of Nucleoside Diphosphate Kinase B With Heterotrimeric ...
Jan 3, 2007 · NDPK B/Gbetagamma-mediated G(s) activation contributes by about 50% to basal cAMP formation and contractility in rat cardiac myocytes.
[57]
Deficiency in nucleoside diphosphate kinase B leads to endothelial ...
Feb 21, 2025 · Deficiency in nucleoside diphosphate kinase B leads to endothelial activation of the hexosamine biosynthesis pathway and cardiac dysfunction.Missing: NME2 | Show results with:NME2
[58]
The interaction of nucleoside diphosphate kinase B with Gβγ dimers ...
Aug 6, 2025 · In zebrafish embryos, morpholino-mediated knockdown of zebrafish NDPK B, but not NDPK A, results in a severe decrease in cardiac contractility.
[59]
Deficiency in nucleoside diphosphate kinase B leads to endothelial ...
Feb 21, 2025 · Deficiency in NDPKB leads to endothelial activation of the HBP and cardiac dysfunction. Our findings may highlight the crucial role of proper ...Missing: NME2 | Show results with:NME2
[60]
Nucleoside Diphosphate Kinase B Regulates Angiogenesis ...
Nucleoside diphosphate kinase B (NDPKB) participates in the activation of heterotrimeric and monomeric G proteins, which are pivotal mediators in angiogenic ...
[61]
The actions of NME1/NDPK-A and NME2/NDPK-B as protein kinases
Dec 4, 2017 · This shows the initial transfer of gamma-phosphoryl group from a nucleoside triphosphate (XTP) to a histidine residue in the active site of NDPK ...
[62]
The relationship of NM23 (NME) metastasis suppressor histidine ...
Feb 13, 2018 · This histidine is mechanistically involved in two enzymatic activities, nucleoside diphosphate kinase (NDPK) and histidine protein kinase (HPK).Missing: His117 | Show results with:His117
[63]
The mitochondrially-localized nucleoside diphosphate kinase D ...
Oct 21, 2021 · These data demonstrate NME4 as a novel metastasis suppressor gene, the first localizing to mitochondria, pointing to a role of mitochondria in metastatic ...Missing: integrity | Show results with:integrity
[64]
Nucleoside diphosphate kinase A/nm23-H1 promotes metastasis of ...
Our results provide the first evidence that NDPK-A behaves as a metastasis promoter at least in human neuroblastoma derived from NB69 cells. The findings not ...
[65]
High levels of nm23 expression are related to cell proliferation in ...
Mar 1, 1994 · Reduced expression of the nm23 gene has been correlated with high metastatic potential in rodent mammary tumors and human breast cancer.Missing: overexpression | Show results with:overexpression
[66]
NME1 | Cancer Genetics Web - CancerIndex
Aug 30, 2019 · The NM23 gene is overexpressed in many hematological malignancies and its overexpression predicts poor treatment outcomes. NM23 overexpression ...<|separator|>
[67]
Nucleoside diphosphate kinase A (NME1) catalyses its own ... - Nature
Aug 20, 2025 · The hexameric structure remained unaltered, even in these putatively oligophosphorylated states (Fig. 5a). Although heterogeneity posed a ...