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Rossmann fold

The Rossmann fold is a widespread protein structural motif characterized by a central parallel β-sheet flanked on both sides by α-helices, forming a three-layered α/β/α sandwich that typically binds dinucleotide cofactors such as NAD⁺, NADP⁺, or FAD.^[1] This βαβ unit serves as the core of the domain, often expanded to include up to six or seven β-strands connected by α-helices, with a conserved Gly-x-Gly-x-x-Gly (GXGXXG) loop positioned between the first two strands to interact with the phosphate backbone of the bound nucleotide.^[1] The fold's topology, usually following a 321456 β-strand order with a crossover connection between strands 2 and 3, creates a pocket for cofactor accommodation and is essential for the catalytic functions of many enzymes.^[2] Named after biophysicist Michael G. Rossmann, the fold was first identified in the 1970s through X-ray crystallographic studies of lactate dehydrogenase, where it was recognized as a recurring feature in nucleotide-binding domains across diverse proteins.^[3] Rossmann's 1974 analysis highlighted its evolutionary conservation, suggesting the motif arose early in protein evolution as a primordial nucleotide-binding unit predating the last universal common ancestor.^[2] Over the subsequent decades, structural databases like the Protein Data Bank (PDB) have documented its ubiquity, with Rossmann-like domains appearing in more than 20% of deposited structures and approximately 15% of the human proteome.^[2] Functionally, the Rossmann fold predominates in oxidoreductases and metabolic enzymes, where it facilitates redox reactions by positioning cofactors for hydride transfer, as seen in lactate dehydrogenase, alcohol dehydrogenase, and glyceraldehyde-3-phosphate dehydrogenase.^[4] Beyond metabolism, variants contribute to diverse roles, including DNA/RNA binding in sirtuins and BRCA1, signal transduction in CRISPR-Cas systems, and pathogenesis in viral proteins, underscoring its adaptability and evolutionary success.^[2] Variations, such as Rossmann-like folds with fewer β-strands (e.g., five in some P-loop NTPases), expand its presence across superfamilies while retaining the core βαβ architecture for ligand recognition.^[1]

Structure

Core Motif

The Rossmann fold is defined as a beta-alpha-beta structural motif comprising six parallel beta strands arranged in the topological order 3-2-1-4-5-6, interconnected by five alpha helices that form a central beta-sheet sandwiched between two layers of helices.^[5] This architecture creates a three-layered α/β/α sandwich, with the beta strands hydrogen-bonded to constitute the parallel sheet core.^[2] The parallel beta strands typically consist of 3-5 amino acid residues each, enabling tight packing and stability through inter-strand hydrogen bonds, while the connecting alpha helices—each roughly 10-12 residues long—link the strands in the sequence: helix A between strands 1 and 2, helix B between 2 and 3, helix C between 3 and 4 (featuring a right-handed crossover), helix D between 4 and 5, and helix E between 5 and 6.^[2] This modular beta-alpha repeat allows the fold to accommodate nucleotide cofactors within its structural framework.^[5] A hallmark of the Rossmann fold is the conserved GXGXXG sequence motif, known as the Rossmann motif, located in the loop connecting the first beta strand (β1) to the first alpha helix (αA); this glycine-rich region facilitates binding to the phosphate groups of dinucleotides like NAD⁺ by providing backbone flexibility to form hydrogen bonds with the ribose-phosphate moiety.^[4] The small side chains of the glycines enable the sharp turn required for accommodating the cofactor's geometry without steric hindrance.^[6] Rossmann-like folds constitute approximately 20% of all known three-dimensional protein structures deposited in the Protein Data Bank, underscoring their prevalence across diverse enzyme families.^[7]

Variations and Binding Sites

The Rossmann fold exhibits structural variations that adapt it to diverse functional requirements while preserving its core beta-alpha-beta motif. Insertions between beta strands, such as additional alpha helices in certain dehydrogenases, expand the fold to accommodate larger substrates or enhance domain interactions.^[8] These modifications can also include dinucleotide-binding folds for cofactors like NAD or FAD, contrasting with mononucleotide-binding variants that feature a single phosphate recognition site. Rare cases involve left-handed versus right-handed crossovers between strands, altering the topological handedness and potentially influencing cofactor orientation.^[2] Binding sites within the Rossmann fold are precisely defined to interact with nucleotide cofactors. The dinucleotide-binding domain typically features a GXGXXG motif, a glycine-rich loop that coordinates the alpha- and beta-phosphates of the ADP-ribose moiety through hydrogen bonds and van der Waals interactions. Specific residues, such as an aspartate in the beta1-alpha1 loop, stabilize the nicotinamide ring via hydrogen bonding to its carboxamide group, while serines or threonines in adjacent loops bind the ribose hydroxyls.^[9]^[10] Differences in binding sites distinguish NAD+-specific from NADP+-specific enzymes. In NADP+-dependent variants, an arginine residue insertion near the 2'-position of the adenosine ribose recognizes the additional phosphate group through electrostatic interactions, as first observed in sequence analyses of oxidoreductases. This adaptation enhances specificity without disrupting the overall fold architecture.^[11] Rossmannoids represent non-canonical mimics of the Rossmann fold, featuring similar beta-alpha-beta units but with altered strand connectivity or topology. Examples include the flavodoxin fold, which shares a parallel beta-sheet core but lacks the typical crossover.^[12] These variations impact fold stability through unique hydrogen bonding networks and hydrophobic cores. Insertions often introduce additional intra-domain hydrogen bonds between side chains and backbone atoms, reinforcing the beta-sheet, while adapted hydrophobic cores, comprising conserved leucines and valines, bury nonpolar surfaces to prevent unfolding. Such modifications maintain thermodynamic stability across diverse homologs, with variations contributing to differential resistance to denaturation.^[10]^[13]

Function

Coenzyme Interactions

The Rossmann fold serves as a structural scaffold for binding dinucleotide coenzymes, primarily NAD⁺, NADH, NADP⁺, and NADPH in oxidoreductases, as well as FAD in flavoproteins. These coenzymes exhibit binding affinities typically in the micromolar range, with dissociation constants (K_d) for NAD⁺ in dehydrogenases around 1–10 μM, enabling efficient substrate turnover under physiological conditions. Key interactions occur at distinct sites within the fold. The pyrophosphate linkage of these coenzymes is anchored by the conserved GXGXXG motif at the N-terminus of the first α-helix, where the glycine residues and adjacent main-chain amides form hydrogen bonds to the phosphate oxygens, providing specificity for the dinucleotide backbone.^[14] The adenine moiety stacks against hydrophobic residues, such as leucines or valines, in a pocket formed by β-strands and loops, stabilizing the coenzyme through van der Waals contacts.^[15] Meanwhile, the nicotinamide ring engages in hydrogen bonding with a conserved aspartate residue, which coordinates the amide group and orients the ring for redox reactions.^[16] Coenzyme specificity is governed by additional determinants. For NADP⁺/NADPH, positively charged arginines near the binding site interact electrostatically with the 2'-phosphate on the adenosine ribose, enhancing affinity by up to 100-fold compared to NAD⁺/NADH and excluding the latter through steric and charge repulsion.^[17] Electrostatic steering by these and other charged residues also positions the nicotinamide for pro-R or pro-S hydride transfer, ensuring stereospecificity in catalysis. In variants of the Rossmann fold, non-nucleotide coenzymes like FMN or S-adenosylmethionine (SAM) are accommodated through motif alterations. FMN binding in some flavoproteins relies on a modified Rossmann domain with adjusted phosphate-recognition loops to fit the mononucleotide structure, while SAM-binding methyltransferases feature remodeled β1-loop-α1 elements that reshape the pocket for the sulfonium and methionine moieties.^[8] Crystal structures provide direct evidence of these interactions. For instance, in lactate dehydrogenase (PDB: 1LDH), NAD⁺ adopts an extended conformation within the Rossmann domain, with the pyrophosphate gripped by the GXGXXG motif, adenine stacked against hydrophobic side chains, and nicotinamide hydrogen-bonded to an aspartate, illustrating the fold's role in precise coenzyme orientation.

Catalytic Roles

The Rossmann fold plays a central role in the catalysis of oxidoreductases by precisely positioning substrates and coenzymes to facilitate hydride transfer between the substrate and the nicotinamide ring of NAD(P)H. In these enzymes, the fold orients the C4 position of the nicotinamide for stereospecific hydride abstraction or donation, with specificity determined by the enzyme's class: pro-R transfer in type A dehydrogenases (e.g., L-lysine 6-dehydrogenase, where NAD binds in an anti-conformation) and pro-S transfer in type B enzymes like many short-chain dehydrogenases/reductases. This positioning is achieved through the fold's conserved β-α-β motifs, which anchor the coenzyme while adjacent loops or domains align the substrate's reactive group—such as the hydroxyl in alcohols or carbonyl in aldehydes—for optimal proximity to the hydride donor/acceptor site.^[18]^[19]^[20] Substrate binding in dehydrogenases is supported by structural elements flanking the Rossmann domain, including loops that coordinate alcohol or aldehyde groups via hydrogen bonds and hydrophobic interactions, ensuring efficient hydride transfer. In some cases, this binding induces allosteric effects, such as shifts in domain orientation that enhance catalytic specificity; for instance, in medium-chain dehydrogenases, substrate coordination can modulate coenzyme affinity through remote conformational adjustments. These interactions contribute to the fold's versatility in redox catalysis across diverse substrates.^[20]^[19] Beyond oxidoreductases, the Rossmann fold supports catalysis in transferases, such as UDP-glucose 6-dehydrogenase, where it binds NAD⁺ and positions the UDP-glucose substrate for sequential oxidation steps involving hydride transfers. In this enzyme, the fold undergoes a ~13° rotational conformational change upon ternary complex formation, closing the active site cleft to promote induced fit and sequester reactants, thereby enhancing reaction efficiency. Recent cryo-EM studies (as of 2024) have revealed buried allosteric switches in human UGDH that control conformational changes in the Rossmann domain, influencing ligand identity and catalysis.^[21] Similarly, in ligases like class I aminoacyl-tRNA synthetases, the Rossmann fold binds ATP via a conserved core motif, maintaining active site geometry for amino acid activation and tRNA ligation through nucleotide transfer, with the fold's precise packing enabling allosteric coupling to catalysis. The conservation of this geometry across families ensures reliable positioning of phosphate and ribose moieties, facilitating transfer reactions.^[22]^[12]^[2] These catalytic contributions enhance overall enzyme efficiency, as evidenced by fold-induced conformational dynamics that support induced fit mechanisms and preserve active site architecture. In Rossmann-containing alcohol dehydrogenases, typical kinetic parameters include kcat/Km values ranging from 10³ to 10⁵ M⁻¹ s⁻¹, reflecting high specificity and turnover for ethanol oxidation, with variations depending on organism and conditions.^[22]^[2]^[23]

History

Discovery and Naming

The Rossmann fold, a structural motif common in nucleotide-binding proteins, was first systematically identified through comparative structural analyses of dehydrogenases in the early 1970s. Michael G. Rossmann initiated this work in 1964 by selecting lactate dehydrogenase (LDH) for crystallographic study, driven by a suspicion of shared motifs among NAD⁺-dependent enzymes, though at the time only limited protein structures like myoglobin and hemoglobin were known.^[24] The structure of dogfish LDH was solved at 2.8 Å resolution in 1970, revealing an alternating β-α-β architecture in the NAD⁺-binding domain, but initial interpretations did not yet unify it across proteins. Subsequent determination of the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) structure from lobster muscle in 1973 highlighted striking similarities in the NAD⁺-binding regions of LDH and GAPDH, including parallel β-sheets flanked by α-helices that accommodated the dinucleotide cofactor. These observations were extended by comparisons with emerging structures of alcohol dehydrogenase and malate dehydrogenase, determined by Carl-Ivar Brändén and Leonard Banaszak, which showed vague resemblances in secondary element arrangements but lacked a cohesive framework.^[24] Rossmann's group formalized this motif in 1974 through a seminal paper that linked the β-α-β units across multiple dehydrogenases, proposing it as an evolutionary conserved domain for nucleotide binding.^[5] The motif, referred to as a "common nucleotide binding structure" in the 1974 paper, was later named the Rossmann fold in recognition of Michael Rossmann's pioneering role in its description, particularly his analysis of LDH as the inaugural example; the term emerged in subsequent studies and reviews in the late 1970s and 1980s.^[5]^[25] Prior to this, 1960s studies on dehydrogenase sequences and partial structures had noted superficial similarities, such as conserved residues near cofactor sites, but no unified structural motif was articulated until Rossmann's comparative approach integrated crystallography with evolutionary insights.^[24]

Key Milestones

In the late 1980s, significant progress was made in elucidating the structural basis for coenzyme specificity within the Rossmann fold. Israel Hanukoglu and Tamar Gutfinger identified key differences in the binding sites for NAD and NADP in oxidoreductases, particularly through sequence analysis of adrenodoxin reductase, revealing that NADP-binding sites feature a modified consensus motif with an alanine substitution in the GXGXXG fingerprint, which influences phosphate recognition and enables targeted engineering of coenzyme preference.^[26] During the 1990s and 2000s, advances in X-ray crystallography expanded the recognized scope of the Rossmann fold beyond classical dehydrogenases to include a wider array of enzymes involved in nucleotide-dependent processes, such as certain transferases and synthases, highlighting its versatility in cofactor binding. Concurrently, the fold was formally incorporated into major structural classification databases; the Structural Classification of Proteins (SCOP) database, released in 1995, categorized the Rossmann fold as a distinct superfamily (c.2.1) based on initial PDB structures, while the Class, Architecture, Topology, and Homologous superfamily (CATH) classification, emerging around the same period, grouped it under topology 3.40.50, facilitating systematic analysis of its prevalence across protein families. Engineering efforts in the 1990s further validated the functional roles of the conserved GXGXXG motif through site-directed mutagenesis studies. For instance, mutations in the glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus altered coenzyme specificity from NAD to NADP by modifying residues in the dinucleotide-binding region, confirming the motif's critical interaction with the ribose-phosphate moiety and paving the way for rational protein design. In the 2010s, comprehensive reviews by Israel Hanukoglu emphasized the conservation of the Rossmann motif in steroidogenic and sterol-metabolizing enzymes, such as adrenodoxin reductase, where the βαβ fold maintains invariant interfaces for FAD and NADP despite sequence divergence, underscoring its role in electron transfer pathways. This period also saw a marked increase in Protein Data Bank (PDB) entries featuring the Rossmann fold, reflecting its ubiquity and aiding in the annotation of thousands of new structures through automated classification tools. Post-2020 analyses reinforced the fold's dominance in the protein universe. A 2021 study by Kirill E. Medvedev, Lisa N. Kinch, and Nick V. Grishin identified Rossmann-like domains in 38,685 PDB structures as of June 2020, comprising over 20% of all known structures, with evidence of convergent evolution in non-homologous proteins adopting similar topologies for diverse catalytic functions.^[2]

Evolution

Origins and Conservation

The Rossmann fold is hypothesized to have ancient evolutionary origins, likely emerging from a primordial βαβ ancestral fragment and predating the last universal common ancestor (LUCA). This fold is present in the genomes of LUCA, as evidenced by its involvement in core metabolic pathways such as the Wood-Ljungdahl pathway, and it exhibits ubiquity across all three domains of life—bacteria, archaea, and eukaryotes—reflecting its fundamental role in early cellular metabolism. For instance, Rossmann enzymes participate in ancient reactions utilizing cofactors like NAD(P) and flavins, which were central to the primordial energy networks of anaerobic organisms. Conservation of the Rossmann fold is profound at the structural level, with the core α/β/α sandwich topology and β-strand crossovers maintained across diverse enzymes, despite low sequence identity typically ranging from 10-20%. In orthologs of glyceraldehyde-3-phosphate dehydrogenase (GAPDH), for example, key phosphate-binding residues and the overall dinucleotide-binding motif remain identical from bacterial to eukaryotic forms, underscoring structural fidelity that supports conserved cofactor interactions across kingdoms. This divergence in sequence but convergence in structure highlights the fold's robustness and adaptability while preserving essential functional geometry. Gene duplication has played a key role in the evolution of Rossmann domains, frequently resulting in their tandem repetition within multidomain proteins, which enhances metabolic complexity by enabling multifunctional enzymes. Examples include pyruvate-ferredoxin oxidoreductase and carbon monoxide dehydrogenase/acetyl-CoA synthase, where duplicated Rossmann-like motifs bind multiple cofactors or substrates, facilitating integrated catalytic cascades. Phylogenetic analyses indicate primarily vertical inheritance of the canonical Rossmann fold from LUCA, with rare instances of horizontal gene transfer contributing to its distribution. A 2019 study by Medvedev et al. classified Rossmann-like domains into homology groups, revealing ancient vertical descent in metabolic enzymes while noting limited horizontal events in specialized lineages. As of 2021, the fold appears in approximately 38,000 Protein Data Bank (PDB) structures, encompassing over 100 enzyme classes and accounting for nearly 40% of reference metabolic reactions.

Rossmann-like Folds

Rossmann-like folds encompass a diverse set of structural motifs that deviate from the canonical Rossmann fold through partial implementations, rearrangements, or independent evolutionary origins, yet retain functional utility in nucleotide or cofactor binding. Rossmannoids, in particular, represent truncated or modified versions of the motif, featuring partial or rearranged β-α-β units with typically 2-4 β-strands instead of the full six, forming a minimal three-layer α/β/α sandwich with a characteristic crossover connection between the second and third strands.^[2] These structures are exemplified in FMN-binding reductases, such as the FAD-binding domain of renalase and the flavodoxin-like fold in DJ-1, where the reduced strand count supports efficient cofactor interactions in metabolic pathways.^[2] In contrast, the conventional Rossmann group adheres to a strict six-stranded parallel β-sheet flanked by α-helices, classified within specific X-groups of the Evolutionary Classification of Protein Domains (ECOD) database, such as the Rossmann-related subgroup (ECOD ID: 2003).^[27] This core topology unifies homologous domains, but evolutionary divergences arise through insertions and deletions that fragment the motif, leading to superfamily splits; for instance, antiparallel β-strand insertions in pyruvate-ferredoxin oxidoreductase domain III or strand deletions in certain glycoside hydrolases disrupt the full sheet while preserving the overall architecture.^[2] Such modifications result in low sequence similarity (often <20%) across divergent groups, yet structural cores align with root-mean-square deviation (RMSD) values below 2 Å, highlighting conserved geometric constraints despite sequence drift.^[28] Convergent evolution further expands the Rossmann-like repertoire, with the motif emerging independently in non-homologous proteins across 163 ECOD homology groups (H-groups) and 26 X-groups lacking homology evidence.^[28] Notable examples include Rossmann-like domains in viral polymerases and helicases from archaeal and bacterial viruses, such as those in STIV B116-like proteins and Zika virus NS1, where the fold facilitates diverse enzymatic roles like nucleotide transfer without shared ancestry.^[29] These instances, identified through structural comparisons like Dali Z-scores ≥8, underscore independent origins supported by topological and functional convergence in reaction pathways.^[28] Overall, the prevalence of Rossmann-like folds—comprising about 20% of Protein Data Bank structures—stems from the motif's structural simplicity, which promotes repeated evolution tailored to nucleotide-binding demands across unrelated protein families.^[2]

Examples and Applications

Prominent Enzymes

The Rossmann fold is exemplified in dehydrogenases such as lactate dehydrogenase (LDH, EC 1.1.1.27), where it was first structurally characterized in the dogfish M4 isoform, originally determined at 2.8 Å resolution (Adams et al., 1970, Nature) and refined at 2.0 Å (PDB ID: 6LDH), revealing the canonical six-stranded parallel β-sheet flanked by α-helices for NAD⁺ binding.^[30]^[31] Alcohol dehydrogenase (ADH, EC 1.1.1.1), another NAD⁺-dependent enzyme, features a similar Rossmann domain in its coenzyme-binding subunit, as seen in the horse liver structure at 2.1 Å resolution (PDB ID: 1HLD), which highlights the fold's role in alcohol oxidation across diverse substrates.^[32] Kinases and transferases also incorporate the Rossmann fold, notably in glyceraldehyde-3-phosphate dehydrogenase (GAPDH, EC 1.2.1.12), a key glycolytic enzyme whose N-terminal domain adopts the motif for NAD⁺ coordination; the bacterial Bacillus stearothermophilus structure was resolved at 1.8 Å (PDB ID: 1GAD), demonstrating the fold's conservation in the tetrameric assembly.^[33] Similarly, UDP-glucose 6-dehydrogenase (UGDH, EC 1.1.1.22) utilizes the Rossmann fold in its NAD⁺-binding site to oxidize UDP-glucose to UDP-glucuronic acid, with the human enzyme structure at 2.8 Å resolution (PDB ID: 3TDK) illustrating domain rotations upon cofactor binding.^[34] Beyond dehydrogenases, the fold appears in other enzyme classes, including dihydrofolate reductase (DHFR, EC 1.5.1.3), which binds NADPH via a modified Rossmann domain; the Escherichia coli structure at 1.9 Å resolution (PDB ID: 2RK3) confirms the β-sheet core's adaptation for folate reduction.^[35] Flavin-dependent oxidases like glucose oxidase (EC 1.1.3.4) employ a Rossmann-like fold for FAD binding, as evidenced by the Aspergillus niger structure at 2.3 Å resolution (PDB ID: 1GAL), underscoring the motif's versatility in oxygen-mediated oxidations.^[36] Cross-kingdom variations highlight the fold's evolutionary persistence in GAPDH, where bacterial isoforms share the Rossmann domain with eukaryotic cytosolic forms, but plant plastidic GAPDH (e.g., spinach A₄ isoform at 3.0 Å resolution, PDB ID: 1JN0) exhibits a distinct tetrameric arrangement adapted for photosynthetic carbon fixation, differing from the cytosolic counterpart in subunit interfaces while retaining the core NADP⁺-binding architecture.^[37]

Modern Uses

In structural biology, the Rossmann fold serves as a key motif for mining the Protein Data Bank (PDB) and integrating predictions from tools like AlphaFold, facilitating the identification and classification of nucleotide-binding domains across proteomes. Databases such as ECOD and CATH have been updated post-2020 to incorporate AlphaFold structures, revealing Rossmann folds as one of the most prevalent domain architectures, comprising highly populated homologous groups shared between eukaryotes and bacteria. For instance, analysis of 48 whole proteomes from the AlphaFold Database classified 746,349 domains, with Rossmann folds showing consistent ubiquity and slight variations in bacterial predictions compared to experimental references, aiding in proteome-wide annotations of enzymatic functions.^[38]^[39] In biotechnology, Rossmann fold enzymes are engineered to enhance cofactor specificity and activity for industrial applications, such as biofuel production. Directed evolution and structure-guided mutagenesis have been applied to alcohol dehydrogenases (ADHs) bearing Rossmann folds, modifying the NAD-binding pocket to improve ethanol yield in microbial pathways; for example, variants of hyperthermophilic ADH exhibit shifted coenzyme preference from NAD to NADP, boosting thermostability and efficiency in high-temperature biofuel cells. The Rossmann-toolbox, a deep learning protocol, predicts and designs cofactor specificity (e.g., NAD vs. FAD) with over 93% accuracy using sequence or structure inputs, enabling rational re-engineering for metabolic pathway optimization in synthetic strains.^[40]^[41]^[42] Drug design leverages the conserved Rossmann fold for targeting cofactor-binding sites in disease-related enzymes. Dihydrofolate reductase (DHFR), featuring a Rossmann-like domain for NADPH binding, is inhibited by methotrexate (MTX), an antifolate that occupies the active site to disrupt folate metabolism in cancer cells, with structural studies confirming MTX's deep cavity binding and clinical efficacy in leukemia therapy. Similarly, NAD+-competitive inhibitors target Rossmann folds in oncology, such as those against sirtuins (e.g., SIRT2) or CtBP1, where small molecules exploit the dinucleotide-binding motif to modulate deacetylation and suppress tumor progression.^[43]^[44]^[45] In synthetic biology, de novo Rossmann fold proteins are designed to incorporate non-natural cofactors or novel functions, expanding the toolkit for custom enzymes. Computational methods like Loop-Helix-Loop Unit Combinatorial Sampling have yielded well-folded synthetic Rossmann variants, such as ROS2_36830, which adopt non-native geometries for tunable ligand binding without relying on natural scaffolds. CRISPR screens have identified Rossmann fold variants in associated systems (e.g., CARF domains), informing the engineering of signaling cascades for orthogonal genetic circuits, though applications remain focused on natural-like adaptations for antiviral or metabolic control.^[46]^[47]^[48] Recent advances, including studies from 2021 onward, underscore the Rossmann fold's prevalence in informing proteome annotations and therapeutic strategies. Medvedev et al. analyzed ECOD data to classify Rossmann-like domains in ~15% of the human proteome and 20% of PDB structures, highlighting their role in 59% of disease-causing mutations and potential as drug targets due to conserved cofactor sites. These insights, combined with tools like Rossmann-toolbox, support forward-looking applications in annotating uncharacterized proteins and designing inhibitors for metabolic disorders. As of 2024, integrations with AlphaFold3 have improved modeling of Rossmann folds in viral proteins, aiding antiviral drug design.^[2]^[49]

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[42]
Interaction of dihydrofolate reductase with methotrexate: Ensemble ...
Because of its important metabolic role, DHFR has been a target for anti-cancer drugs. One of these drugs is methotrexate that has a binding dissociation ...Experimental Methods · Methotrexate Binding · Results
[43]
Dihydrofolate Reductase: X-ray Structure of the Binary Complex with ...
Methotrexate is bound in a 15-angstrom-deep cavity with the pteridine ring buried in a primarily hydrophobic pocket, although a strong interaction occurs ...
[44]
Identification and characterization of a new potent inhibitor targeting ...
May 6, 2024 · Structurally, CtBP1/BARS belongs to the hydroxyacid-dehydrogenase family and possesses a NAD(H)-binding Rossmann fold, which, depending on ...
[45]
6VGB: De novo designed Rossmann fold protein ROS2_36830
Aug 19, 2020 · Naturally occurring proteins vary the precise geometries of structural elements to create distinct shapes optimal for function.Missing: prevalence | Show results with:prevalence
[46]
https://www.rcsb.org/structure/6VGB
[47]
Structural basis of cyclic oligoadenylate degradation by ancillary ...
Nov 26, 2021 · These enzymes contain a CRISPR-associated Rossman-fold (CARF) domain, which binds and cleaves the cA molecule. Here, we present the structures ...Missing: synthetic | Show results with:synthetic