Fact-checked by Grok 2 weeks ago

Thermostability

Thermostability refers to the ability of a biomolecule, such as a protein or enzyme, to resist irreversible denaturation and maintain its structural conformation and functional activity under elevated temperature conditions for an extended period.^[1] This property is particularly evident in enzymes from thermophilic organisms, which can operate at temperatures exceeding 50°C without loss of catalytic efficiency.^[2] In biological systems, thermostability is crucial for proteins to avoid unfolding or aggregation at high temperatures, a process often quantified by metrics like the melting temperature (Tm), where 50% of the protein is denatured.^[3] It arises from evolutionary adaptations in extremophiles, such as enhanced hydrophobic interactions, salt bridges, and compact folding that stabilize the native state against thermal stress.^[4] Beyond biology, the concept extends to materials and fluids, where it denotes resistance to chemical degradation or phase changes during heat exposure, as seen in polymers or lubricants used in high-temperature environments.^[5] Thermostability holds significant importance in industrial biotechnology, enabling enzymes to withstand harsh processing conditions like those in biofuel production, food processing, and pharmaceutical manufacturing, thereby improving efficiency and reducing costs.^[1] For instance, thermostable cellulases from thermophilic bacteria facilitate the breakdown of lignocellulosic biomass at elevated temperatures, accelerating enzymatic hydrolysis without microbial contamination.^[6] Advances in protein engineering, including directed evolution and rational design, have further enhanced thermostability for practical applications, addressing challenges in scalability and stability under non-optimal pH or solvent conditions.^[7]

Fundamentals

Definition and Mechanisms

Thermostability refers to the ability of a molecule or material, particularly biomolecules such as proteins and lipids, to retain its structural integrity and functional properties under elevated temperatures that would otherwise cause denaturation or disruption.^[1] In contrast, thermolability describes the susceptibility of these entities to heat-induced unfolding or phase changes, leading to loss of native conformation and activity.^[4] This property is crucial for maintaining biological processes in high-temperature environments, where thermostable molecules resist irreversible alterations that compromise their role in cellular machinery. The primary biophysical mechanism underlying thermostability involves the thermodynamic balance governing folding and unfolding transitions, often described by the Gibbs free energy change: \Delta G = \Delta H - T\Delta S, where \Delta G is the free energy difference between folded and unfolded states, \Delta H is the enthalpy change, T is the absolute temperature, and \Delta S is the entropy change.^[8] At higher temperatures, the T\Delta S term dominates, favoring entropy-driven unfolding as the disordered state becomes more entropically favorable; thermostability arises when stabilizing interactions, such as hydrophobic effects that bury nonpolar residues in the core to minimize solvent exposure, counteract this by enhancing \Delta H contributions.^[9] In proteins, additional stabilization comes from hydrogen bonding networks that link polar groups within the structure and salt bridges (ionic interactions between charged residues) that provide electrostatic reinforcement, particularly on the surface to prevent aggregation.^[10] For lipids in membranes, thermostability manifests through resistance to gel-to-liquid crystalline phase transitions, where saturated fatty acid chains and cholesterol modulate the transition temperature to preserve membrane fluidity and integrity.^[11] Several environmental factors influence thermostability by modulating the stability curve, which plots \Delta G against temperature. Variations in pH affect the protonation states of ionizable residues, altering electrostatic interactions like salt bridges and thus shifting the unfolding transition; for instance, optimal pH values near the protein's isoelectric point often maximize stability.^[12] Ionic strength impacts screening of charges, where higher salt concentrations can stabilize or destabilize depending on the net charge distribution, generally enhancing hydrophobic interactions by salting out effects.^[13] Solvent composition, such as the presence of cosolvents or denaturants, further tunes these curves by influencing water structure and hydrogen bonding, with stabilizing solvents like polyols reinforcing the folded state.^[14] A key quantitative measure is the melting temperature (T_m), defined as the midpoint of the thermal unfolding transition where 50% of the molecules are in the unfolded state, assuming a two-state model.^[15] This value is derived from van't Hoff analysis, which relates the equilibrium constant for unfolding (K = [\text{unfolded}]/[\text{folded}]) to temperature via \ln K = -\Delta H / RT + \Delta S / R, allowing extrapolation of thermodynamic parameters from experimental transition data.^[16] Higher T_m values indicate greater thermostability, reflecting a broader \Delta G stability window before unfolding predominates.^[4]

Measurement Techniques

Thermostability of biomolecules, particularly proteins, is quantified through a variety of experimental techniques that monitor structural changes or functional integrity as temperature increases. These methods provide insights into key parameters such as the melting temperature (T_m), where half of the molecules are unfolded, and the enthalpy of unfolding (ΔH_unf), reflecting the energy required for denaturation. Differential scanning calorimetry (DSC) is a primary biophysical technique that directly measures changes in heat capacity as a function of temperature, revealing endothermic peaks corresponding to unfolding events. In DSC, a protein sample is heated in a calorimeter alongside a reference buffer, and the difference in heat flow is recorded to determine T_m and ΔH_unf with high precision, offering a complete thermodynamic profile without labels or ligands. This method is particularly valuable for its ability to handle dilute solutions and detect multiple unfolding domains in multi-subunit proteins.^[17] Circular dichroism (CD) spectroscopy complements DSC by monitoring secondary structure integrity during thermal ramping, typically by tracking changes in ellipticity at 222 nm, which is sensitive to α-helical content. In a standard protocol, far-UV CD spectra or single-wavelength measurements are collected from 0°C to 70°C in 0.2°C increments, allowing the construction of unfolding curves to derive T_m through sigmoidal fitting or first-derivative analysis. CD is advantageous for its sensitivity to conformational transitions and compatibility with low protein concentrations (0.1–0.5 mg/mL), though it requires careful baseline correction for buffer contributions. Fluorescence-based assays, such as those using the environmentally sensitive dye SYPRO Orange, provide a high-throughput alternative by detecting exposure of hydrophobic cores upon unfolding. In these assays, the protein-dye mixture is heated from 25°C to 95°C in a real-time PCR instrument, with fluorescence intensity increasing sharply at T_m due to dye binding to non-polar residues; T_m is calculated as the inflection point of the sigmoidal curve via Boltzmann fitting.^[18]^[19] Thermal shift assays (TSA), often incorporating SYPRO Orange, extend fluorescence methods to evaluate ligand-induced stabilization by observing shifts in T_m (ΔT_m). Binding of stabilizing ligands, such as small molecules at 100–250 µM concentrations, increases T_m by 2°C or more, indicating favorable interactions that enhance thermodynamic stability; this is quantified by comparing fluorescence profiles in the presence and absence of the ligand. TSA's simplicity and 96-well format make it ideal for screening, though it assumes reversible unfolding and may overestimate stability for aggregating proteins. In vivo approaches assess thermostability within cellular contexts, bypassing isolation artifacts. Growth assays in thermophilic organisms, like Parageobacillus thermoglucosidasius at 55–68°C, screen mutant libraries for colony formation and fluorescence under heat stress, selecting variants with enhanced folding efficiency at elevated temperatures. Alternatively, reporter gene systems, such as those driven by heat-shock promoters like Hsp70A.1 fused to luciferase, quantify expression levels post-heat exposure (42–68°C for 5–20 min), where reduced reporter activity in the transition zone (e.g., a 2.5°C window) signals protein instability and cellular damage. These methods integrate physiological factors like chaperones but require validation against in vitro data.^[19]^[20]^[21] Data interpretation in thermal assays often involves extrapolating stability parameters beyond experimental temperatures using the Gibbs-Helmholtz equation, which relates the unfolding free energy (ΔG_unf) to enthalpy, heat capacity change (ΔC_p), and T_m:

\Delta G_{\text{unf}}(T) = \Delta H_{\text{unf}} \left(1 - \frac{T}{T_m}\right) - \Delta C_p \left( T - T_m + T \ln\frac{T_m}{T} \right)

Here, ΔH_unf and ΔC_p are derived from calorimetric or spectroscopic data, enabling prediction of ΔG_unf at any T (in Kelvin) assuming constant ΔC_p; positive ΔG_unf indicates folded-state favorability. This equation is widely applied in molecular dynamics validations and stability predictions for proteins like apoflavodoxin. However, errors can arise from aggregation, which distorts thermograms in DSC by elevating post-transition heat capacity or broadening peaks in CD and TSA, as unfolded chains form non-specific oligomers that confound reversible unfolding assumptions; mitigation involves additives like arginine to suppress aggregation.^[22]^[17]

Biological Contexts

Proteins and Enzymes

Thermostability in proteins and enzymes refers to their ability to maintain structural integrity and functional activity under elevated temperatures, a critical adaptation for organisms in high-temperature environments. In biological systems, this property prevents denaturation and aggregation, allowing enzymatic catalysis to proceed efficiently where mesophilic counterparts would fail. Proteins from thermophiles and hyperthermophiles exhibit enhanced stability through specific molecular features that counteract thermal disruption of non-covalent interactions.^[23] Key structural determinants of thermostability include increased numbers of disulfide bonds, which covalently link distant regions to reduce unfolding entropy; shorter or more rigid loops that minimize flexible regions prone to thermal fluctuations; and a higher proportion of charged residues forming ion-pair networks and salt bridges on the protein surface. For instance, in hyperthermophilic proteins, disulfide bridges are often buried or intersubunit, contributing to stability above 100°C, as seen in enzymes from Aquifex pyrophilus. Shorter loops, frequently stabilized by proline residues, are prevalent in proteins like citrate synthase from Pyrococcus furiosus, enhancing rigidity without compromising function. Charged residues, such as arginine and glutamate, participate in extensive ion-pair networks; in P. furiosus glutamate dehydrogenase, 45 ion pairs per subunit—compared to 26 in mesophilic homologs—enable a half-life of 12 hours at 100°C and a melting temperature of 114.5°C.^[23]^[24]^[25] Enzyme kinetics in thermostable proteins follow the Q10 temperature coefficient, where reaction rates typically double for every 10°C increase, similar to mesophilic enzymes, but with a higher optimal temperature range due to resistance to denaturation. This allows thermostable enzymes to sustain catalytic activity at temperatures where mesophilic variants lose function, as their activation energies align universally across thermal adaptations, though hyperthermophilic enzymes exhibit greater rigidity at ambient temperatures to preserve activity at extremes. The Q10 values, often around 2-3, reflect this conserved dependency, ensuring efficient metabolism in hot habitats without excessive heat-induced inactivation.^[26] A prominent example is Taq DNA polymerase from the thermophile Thermus aquaticus, which operates optimally at 72°C and incorporates nucleotides at 2-4 kilobases per minute, enabling repeated thermal cycling without loss of activity. Sequence alignments with mesophilic homologs, such as E. coli DNA polymerase I, reveal differences including higher hydrophobicity, more ion pairs, and reduced loop flexibility in Taq, contributing to its half-life of 40 minutes at 95°C versus rapid inactivation in mesophiles. These adaptations highlight how subtle sequence variations enhance thermostability while preserving core catalytic mechanisms.^[27]^[23] Evolutionarily, protein thermostability in extremophiles correlates strongly with habitat temperature, with hyperthermophiles like those in archaea showing adaptive increases in stabilizing features as growth optima exceed 80°C. Comparative genomics across thermophilic lineages reveals that higher environmental temperatures select for proteins with more salt bridges and hydrophobic cores, as evidenced in archaeal extremophiles where proteome-wide ion-pair density scales with optimal growth temperature up to 105°C. This adaptation ensures functional resilience in geothermal niches, distinguishing extremophilic proteomes from mesophilic ones through habitat-driven selective pressures.^[28]^[29]

Nucleic Acids and Other Biomolecules

Thermostability of nucleic acids, particularly DNA, is significantly influenced by base composition, with higher guanine-cytosine (GC) content elevating the melting temperature (Tm) due to the three hydrogen bonds in GC pairs compared to two in adenine-thymine (AT) pairs. For oligonucleotides, a commonly used empirical formula approximates Tm as 69.3 + 0.41*(%GC) - 650/L, where L is the length in nucleotides, highlighting how increased GC content directly correlates with thermal stability.^[30] In vivo, DNA supercoiling further modulates thermostability; in thermophiles, enzymes like reverse gyrase introduce positive supercoils that raise the melting temperature of double-stranded DNA, preventing denaturation at extreme temperatures above 80°C. RNA exhibits thermostability through stable secondary structures, such as hairpins formed by intramolecular base pairing, which resist degradation by RNases even at elevated temperatures. These structures are particularly prominent in thermophilic organisms, where RNA maintains integrity under hyperthermal conditions, enabling processes like replication in environments exceeding 90°C.^[31] Unlike protein folding, which relies on hydrophobic cores, nucleic acid stability stems from base stacking and hydrogen bonding in polynucleotide chains, though both contribute to overall cellular integrity in thermophiles. Lipid membranes in thermophiles adapt through alterations in fatty acid composition and lipid types to maintain fluidity and barrier function at high temperatures. Incorporation of saturated fatty acids increases the gel-to-liquid crystalline phase transition temperature by promoting tighter packing and reducing chain mobility, as seen in bacterial membranes where longer saturated chains raise transition points compared to unsaturated counterparts.^[32] In hyperthermophiles, archaeal ether lipids, featuring isoprenoid chains linked by ether bonds rather than ester bonds, provide exceptional stability; these tetraether lipids form monolayer membranes that withstand temperatures up to 100°C without phase disruption, as exemplified in species like Sulfolobus acidocaldarius.^[11] Carbohydrates contribute to thermostability via robust glycosidic bonds in polysaccharides that form structural scaffolds in cell walls. In thermophilic bacteria, cell wall components like peptidoglycan feature β-1,4-glycosidic linkages between N-acetylglucosamine and N-acetylmuramic acid, which help preserve structural integrity under thermal stress.

Applications

Industrial and Biotechnology Uses

Thermostable DNA polymerases have revolutionized molecular biology techniques, particularly the polymerase chain reaction (PCR), by enabling automated thermal cycling without the need for repeated enzyme additions. The Taq polymerase, isolated from the thermophilic bacterium Thermus aquaticus, maintains activity through high-temperature denaturation steps (typically 94–95°C), allowing efficient amplification of DNA segments in a single reaction vessel. This thermostability eliminates the labor-intensive process of adding fresh enzyme after each cycle, as required with mesophilic polymerases, thereby increasing throughput and reducing contamination risks in diagnostic and research applications. Variants of thermostable polymerases, such as Pfu from the hyperthermophilic archaeon Pyrococcus furiosus, offer enhanced fidelity through 3'–5' exonuclease proofreading activity, resulting in error rates up to 10-fold lower than Taq during PCR amplification. Pfu's superior thermostability supports extension at 72°C and withstands repeated exposures to 95°C, making it ideal for cloning and sequencing where sequence accuracy is critical. These enzymes collectively underpin routine PCR protocols in biotechnology, facilitating gene cloning, mutation detection, and forensic analysis.^[33] In animal nutrition, thermostable phytases serve as essential feed additives to counter the anti-nutritional effects of phytic acid in plant-based diets, which binds minerals like phosphorus, calcium, and zinc, reducing their bioavailability in monogastric animals such as poultry and swine. Derived from thermophilic fungi or bacteria, these enzymes hydrolyze phytate at elevated temperatures (60–80°C) during feed pelleting, releasing inorganic phosphate and significantly improving nutrient absorption without degrading during processing. This application not only enhances animal growth performance and feed efficiency but also minimizes phosphorus excretion, mitigating environmental pollution from manure runoff.^[34] Thermostability is exploited in recombinant protein production to streamline purification via heat treatment, where host cell proteins and contaminants denature at 60–80°C while the target thermostable protein remains soluble and functional. For instance, in Escherichia coli expression systems, heating crude lysates precipitates thermolabile impurities, achieving 3–5-fold purity enrichment in a single step and reducing reliance on costly chromatography. This method is particularly advantageous for industrial-scale biomanufacturing of enzymes or therapeutics, cutting purification costs by simplifying workflows and increasing yields.^[35] In biofuel production, thermostable cellulases and xylanases from thermophilic microorganisms, such as Geobacillus and Caldicellulosiruptor species, enable efficient hydrolysis of lignocellulosic biomass at 70–90°C, breaking down cellulose and hemicellulose into fermentable sugars for ethanol or butanol fermentation. These enzymes resist microbial contamination in high-temperature processes and maintain activity longer than mesophilic counterparts, boosting saccharification yields by 20–40% and lowering energy inputs for cooling. Their use in consolidated bioprocessing integrates hydrolysis and fermentation, accelerating the conversion of agricultural residues into sustainable fuels.^[36]

Medical and Pharmaceutical Applications

In medical diagnostics, thermostable antigens and enzymes enable reliable testing in resource-limited environments where refrigeration is unavailable. For instance, recombinant VP7 antigen from bluetongue virus, when lyophilized with trehalose, maintains stability in indirect ELISA kits at 37°C for up to 3 days and at 45°C for 30 hours, facilitating antibody detection in sheep serum for field use in tropical regions like India.^[37] Similarly, a thermostable lamprey variable lymphocyte receptor (VLR) monoclonal antibody (5A10) targeting Plasmodium falciparum histidine-rich protein-2 (HRP-2) retains binding capacity up to 70°C, outperforming traditional mouse IgG antibodies and supporting heat-stable rapid diagnostic tests (RDTs) for malaria in tropical areas via sandwich ELISA.^[38] Thermostable luciferases further enhance bioluminescent assays for point-of-care testing (POCT); NanoLuc luciferase withstands 55°C or 37°C for over 15 hours, enabling sensitive detection of biomarkers like ATP in infectious disease assays with limits of detection (LODs) in the femtomolar to nanomolar range, suitable for portable devices in low-resource settings.^[39] Thermostable formulations in vaccines and therapeutics address cold-chain limitations, improving access in remote areas. Nanoemulsion-adjuvanted vaccines, such as ID93 + GLA-SE for tuberculosis, achieve stability for 3 months at 37°C with less than 20% adjuvant loss when lyophilized with trehalose or sucrose, retaining immunogenicity and supporting controlled temperature chain (CTC) distribution without full refrigeration.^[40] For oral polio vaccine (OPV), substituting deuterium oxide for water in the final blending stage significantly enhances thermostability at temperatures ≥37°C, maintaining potency and safety as confirmed by clinical data, though development was halted due to logistical concerns.^[41] In drug formulation, thermostable liposomes improve targeted delivery and storage of therapeutics. Liposomes incorporating tetraether lipids from Thermoplasma acidophilum exhibit high thermal stability, retaining encapsulation efficiency and size integrity at 70°C for 30 minutes, making them suitable for encapsulating hydrophilic drugs like doxorubicin for sustained release in cancer therapy.^[42] Lyophilized liposomes bound to antigens, such as Pfs25 for malaria transmission-blocking, demonstrate thermostability with preserved particle size, protein folding, and binding capacity after exposure to 50°C, enabling room-temperature storage for vaccine-like immunotherapeutics.^[43] Engineered protein therapeutics, including insulin analogs with single-chain structures and acidic substitutions, resist thermal degradation, allowing room-temperature stability for up to 2 months or more, which reduces supply chain vulnerabilities for diabetes management in hot climates.^[44] Challenges in thermostability profoundly impact global health, particularly in low-resource settings where heat exposure in supply chains leads to potency loss. In India's vaccine cold chain, peripheral facilities experience suboptimal temperatures above 8°C in 14.7% of cases, with state stores at 14.3%, accelerating degradation of heat-sensitive vaccines like DPT, where 76% of vials showed evidence of freezing damage via shake tests, contributing to potential potency loss from temperature excursions including freezing and heat.^[45] Such exposures contribute to widespread efficacy reduction, emphasizing the need for thermostable innovations to mitigate up to 20-50% vaccine wastage in tropical regions and enhance immunization coverage.^[46]

Engineering and Enhancement

Natural Thermostable Sources

Natural thermostable sources primarily arise from extremophiles, microorganisms adapted to extreme environmental conditions that produce enzymes and biomolecules capable of functioning at elevated temperatures. Thermophiles, which thrive in temperatures between 50°C and 80°C, include bacteria such as Thermus aquaticus, isolated from the hot springs of Yellowstone National Park in the late 1960s by Thomas D. Brock and Hudson Freeze. This bacterium yields Taq DNA polymerase, a thermostable enzyme that remains active after repeated heat exposure, highlighting how geothermal environments foster such adaptations.^[47] Hyperthermophiles, growing optimally above 80°C, are predominantly archaea like Sulfolobus acidocaldarius, discovered in acidic Yellowstone geysers, and are also prevalent in marine geothermal vents where temperatures can exceed 100°C. These organisms inhabit geothermally active sites, including terrestrial hot springs and deep-sea hydrothermal vents, where high temperatures drive the evolution of robust molecular machinery.^[48] Advancements in metagenomics have expanded the identification of thermostable molecules by directly sampling microbial communities from these harsh ecosystems without culturing individual species. Functional metagenomic screening of hot spring sediments has uncovered novel thermostable cellulases, such as a GH6 cellobiohydrolase from Japanese hot spring sediments in the Onikobe-Jigokudani geothermal area, selected through activity assays under high-heat conditions.^[49] Similarly, deep-sea vent metagenomes have yielded enzymes like the GH10 xylanase AMOR_GH10A from the Arctic Mid-Ocean Ridge, demonstrating broad substrate specificity and stability up to 90°C via expression in heterologous hosts followed by thermal assays.^[50] These culture-independent approaches reveal the vast, unculturable diversity in thermophilic microbiomes, enabling the functional annotation of genes encoding heat-resistant proteins through sequence-based and activity-driven selections.^[51] Thermostability in these natural sources often involves evolutionary trade-offs, where enhanced rigidity to withstand heat reduces molecular flexibility, leading to suboptimal performance at ambient temperatures. For instance, hyperthermophilic enzymes exhibit decreased catalytic efficiency below 60°C due to constrained conformational dynamics essential for substrate binding, as observed in comparative studies of orthologous proteins across temperature-adapted species.^[52] This compromise reflects selective pressures in extreme niches, prioritizing survival over versatility in cooler conditions, and underscores the ecological specialization of thermostable biomolecules. Protein structural features from these sources, such as increased hydrophobic cores and ion pairs, contribute to this rigidity but are detailed in broader biomolecular contexts.^[53] Biodiversity hotspots like Yellowstone National Park have been pivotal for isolating thermostable sources since the post-1960s era, when Brock's expeditions documented over 100 thermophilic species in its alkaline and acidic springs.^[47] These discoveries, building on early 20th-century observations, established Yellowstone as a global reservoir for thermophile diversity, with ongoing surveys revealing novel archaea and bacteria adapted to pH extremes alongside heat.^[54] Such sites provide irreplaceable ecological context for understanding the origins of thermostability in natural systems.

Directed Evolution and Rational Design

Directed evolution is a laboratory technique that mimics natural selection to engineer proteins with enhanced thermostability by introducing random mutations and screening for variants with improved thermal resistance. This approach typically involves error-prone polymerase chain reaction (PCR) to generate diverse mutant libraries, followed by high-throughput screening or selection for properties such as higher melting temperature (Tm) or prolonged half-life at elevated temperatures. Pioneered in the 1990s, directed evolution has been instrumental in transforming mesophilic proteins into thermostable variants suitable for harsh conditions.^[55] A classic example is the directed evolution of a mesophilic esterase from Bacillus subtilis, where iterative rounds of error-prone PCR and screening increased the Tm by over 14°C after six generations, demonstrating the method's ability to accumulate stabilizing mutations without prior structural knowledge. In protease engineering, directed evolution of subtilisin E resulted in variants with up to a 100-fold improvement in half-life at 60°C, enabling functional equivalence to thermophilic homologs. Success is often quantified by fold-improvements in half-life at operating temperatures; for instance, early 1990s case studies reported 10- to 50-fold enhancements in enzyme stability through multiple evolution rounds.^[56]^[57]^[55] Combinatorial methods like DNA shuffling extend directed evolution by recombining homologous genes, often from thermophilic sources, to create hybrid libraries with synergistic stabilizing features. This technique, developed in the mid-1990s, fragments and reassembles related sequences to generate chimeras with improved thermostability while preserving activity. For example, DNA shuffling of maltogenic amylase genes from thermophilic Bacillus species yielded variants with a 20-fold increase in half-life at 78°C, highlighting its utility in leveraging natural diversity for engineered stability.^[58]^[59] In contrast, rational design employs computational modeling and structural analysis to predict and introduce targeted mutations that enhance thermostability, offering a knowledge-based alternative to random mutagenesis. Tools like Rosetta enable the simulation of protein folding and energy minimization to identify stabilizing changes, such as proline substitutions that rigidify flexible loops and reduce entropy loss upon unfolding. B-factor analysis, derived from X-ray crystallography, identifies regions of high atomic displacement (indicating flexibility) as hotspots for stabilization; mutating these sites has led to variants with 2- to 5-fold half-life improvements. For pepsin, Rosetta-guided proline insertions and loop rigidification increased the Tm by 10°C, underscoring the precision of this approach.^[60]^[61]^[62] Both methods can be combined for optimal results, with directed evolution refining rational designs or vice versa, achieving cumulative fold-improvements in stability—such as 20- to 100-fold half-life extensions in case studies from the late 1990s onward—while maintaining catalytic function. Screening often relies on thermal challenge assays to measure Tm shifts, providing a direct link to practical thermostability gains.^[63]^[57] Recent advances as of 2025 integrate artificial intelligence and deep learning to enhance both directed evolution and rational design. For instance, deep evolution strategies use generative models to create and select functional sequences with improved high-temperature tolerance, while tools like TemBERTure employ transformer-based models to predict thermostability classes and melting temperatures directly from protein sequences, accelerating the engineering process.^[64]^[65]

Pathological Aspects

Thermostable Toxins

Thermostable toxins are biologically derived proteins produced by certain pathogens that retain their toxic activity despite exposure to elevated temperatures, posing significant risks in food safety and human health. These toxins, often secreted by bacteria such as Staphylococcus aureus and Clostridium botulinum, exhibit remarkable heat resistance due to their molecular architecture, enabling them to survive cooking or processing conditions that inactivate the producing microorganisms. This property contributes to foodborne illnesses, as the toxins can persist and cause intoxication even after the bacteria are destroyed.^[66] Prominent examples include staphylococcal enterotoxins, particularly staphylococcal enterotoxin A (SEA), which remains biologically active after boiling at 100°C for up to 30 minutes. SEA, a superantigen produced by S. aureus, triggers severe gastrointestinal symptoms like vomiting and diarrhea upon ingestion. Another example is botulinum neurotoxin type B (BoNT/B), whose light chain is the enzymatically active component responsible for proteolytic cleavage of SNARE proteins, which demonstrates heat stability in milk and resists inactivation during pasteurization at 63°C for 30 minutes. This contrasts with BoNT/A, which is more heat-labile, highlighting serotype-specific variations in thermostability that affect food safety protocols.^[67]^[68] The structural basis for this thermostability lies in compact domains rich in beta-sheets that resist thermal unfolding. Staphylococcal enterotoxins like SEA feature two unequal domains primarily composed of antiparallel β-strands with interspersed α-helices, forming a robust, elliptical scaffold that maintains integrity under heat stress. These β-sheet-rich structures, similar to those in other stable proteins, minimize hydrophobic exposure and enhance packing efficiency, preventing denaturation at temperatures up to 100°C. In contrast, less stable variants like SEH show greater structural flexibility, underscoring how domain compactness correlates with heat resistance.^[69]^[70] These thermostable toxins play a critical role in food poisoning outbreaks, particularly from improperly cooked or reheated foods where bacterial growth occurs prior to toxin production. For instance, SEA persists in processed dairy or meat products after inadequate heating, leading to staphylococcal food poisoning that affects thousands annually. The toxins' resistance to gastric proteases further exacerbates risks, as they reach the intestines intact to elicit emetic responses. Detection relies on immunoassays or PCR targeting toxin genes, revealing persistence in foods even after apparent sterilization.^[71]^[72] Toxicity profiles include low effective doses, with SEA causing illness at concentrations as low as 20 ng to 1 μg per serving, though human data emphasize non-lethal but debilitating effects. Thermal inactivation thresholds are high; SEA retains activity after 100°C exposure but is fully denatured at 121°C for 28-30 minutes under moist heat conditions. These properties necessitate rigorous food processing standards to mitigate risks.^[72]^[73] Evolutionarily, thermostable toxins confer an advantage to pathogens by enabling toxin functionality during host fever responses, where elevated body temperatures (up to 40-41°C) would otherwise impair less stable virulence factors. This resilience supports pathogen survival and transmission in febrile hosts, as seen in S. aureus infections where enterotoxins maintain superantigenic activity amid immune-induced hyperthermia. Such adaptations likely arose from selective pressures favoring heat-tolerant proteins in environments with variable thermal stress.^[74]^[75]

Heat-Resistant Pathogens

Heat-resistant pathogens pose significant challenges in food safety, water treatment, and public health due to their ability to withstand elevated temperatures that would inactivate most microorganisms. Among bacteria, certain spore-forming species exhibit exceptional thermostability, primarily through the formation of endospores that protect genetic material and cellular components during extreme conditions. Clostridium botulinum, a Gram-positive, anaerobic bacterium, produces endospores that are particularly notorious for their resilience, surviving moist heat treatments up to 100°C for several minutes and requiring a standard thermal process of 121°C for at least 3 minutes to achieve a 12-log reduction in viable spores. These endospores are dormant structures with multilayered coats and dipicolinic acid-stabilized cores that confer resistance to heat, desiccation, and chemicals; upon exposure to sublethal heat (e.g., 80–90°C for 10 minutes), they undergo activation, a process that initiates germination by damaging the spore cortex and releasing calcium dipicolinate, allowing outgrowth into vegetative cells under favorable anaerobic conditions. This thermostability enables C. botulinum to persist in improperly processed canned foods, leading to botulism outbreaks if spores germinate and produce neurotoxins. Viruses also demonstrate varying degrees of heat resistance, largely determined by their structural features. Non-enveloped viruses, such as norovirus—a leading cause of viral gastroenteritis—possess robust protein capsids that maintain integrity at higher temperatures compared to enveloped viruses, which have fragile lipid membranes disrupted by heat. The capsid of norovirus (genus Norovirus, family Caliciviridae) remains stable up to 60°C for 30 minutes, retaining infectivity in contaminated food or water, whereas enveloped viruses like influenza or coronaviruses are typically inactivated at 50–60°C within minutes due to envelope denaturation. This differential stability explains why non-enveloped viruses like norovirus are more prevalent in foodborne transmission via contaminated shellfish or produce, surviving pasteurization-like conditions that eliminate enveloped counterparts. Fungal and protozoan pathogens contribute to thermostability concerns in environmental and healthcare settings, particularly in warm, moist niches. Thermotolerant species of Candida, such as C. albicans and C. auris, can colonize hot water distribution systems where temperatures reach 40–50°C, forming biofilms that enhance survival and resistance to disinfectants. As of 2023, over 4,500 clinical cases of C. auris were reported in the US, with continued outbreaks in 2024–2025, emphasizing its role in nosocomial infections.^[76] C. albicans, an opportunistic yeast, exhibits basal growth at 37°C (human body temperature) and can acquire thermotolerance to withstand brief exposures up to 52°C through heat shock protein induction, allowing persistence in hospital plumbing and posing risks of nosocomial infections in immunocompromised patients. Protozoans like Naegleria fowleri (the brain-eating amoeba) thrive in warm waters above 30°C but form resistant cysts that survive higher temperatures, though less relevant to routine heat treatments compared to yeasts. Control strategies for these heat-resistant pathogens rely on validated thermal processes tailored to their tolerances, balancing efficacy with product quality. Pasteurization, for instance, employs low-temperature long-time (LTLT) heating at 63°C for 30 minutes to inactivate vegetative pathogens like Listeria monocytogenes and non-spore-forming bacteria in milk, while higher-temperature short-time (HTST) methods at 72°C for 15 seconds target more resilient vegetative cells. However, failures in pasteurization equipment or process validation have led to outbreaks; in the 1980s, multiple incidents in the United States, including a 1983 Listeria outbreak in Massachusetts linked to faulty pasteurization of milk (affecting 49 cases) and a 1985 Salmonella epidemic in Illinois from contaminated pasteurized milk (impacting over 5,000 people), underscored the need for rigorous monitoring to prevent survival of heat-tolerant contaminants. For spores like those of C. botulinum, autoclaving at 121°C for 15–30 minutes ensures sterilization in laboratory and industrial settings, while public health guidelines emphasize combining heat with other hurdles like acidity or preservatives to mitigate risks in low-acid foods.

References

[1]
Thermostability - an overview | ScienceDirect Topics
Thermostability is defined as the ability of a protein to avoid irreversible denaturation under elevated temperature conditions, reflecting its kinetic ...
[2]
Thermostable enzyme research advances: a bibliometric analysis
Mar 27, 2023 · Thermostable enzymes are enzymes that can withstand elevated temperatures as high as 50 °C without altering their structure or distinctive ...
[3]
Thermal stability enhancement: Fundamental concepts of protein ...
A few terminological comments are therefore necessary: (i) Thermostability is defined as the temperature at which protein is 50 % denatured (or in other words, ...
[4]
Thermostability of Biological Systems: Fundamentals, Challenges ...
This review examines the fundamentals and challenges in engineering/understanding the thermostability of biological systems over a wide temperature range ...
[5]
Thermal Stability - an overview | ScienceDirect Topics
Thermal stability is defined as the ability of a material or fluid to withstand machining temperatures while maintaining its chemical composition.Missing: thermostability | Show results with:thermostability
[6]
Thermostability - an overview | ScienceDirect Topics
Thermostability is defined by capacity of an enzyme to retain its active structural conformation at a selected high temperature for a prolonged period.
[7]
Recent advances in the improvement of enzyme thermostability by ...
Thermostability is considered to be an important parameter to measure the feasibility of enzymes for industrial applications.
[8]
Fast-folding proteins under stress - PMC - NIH
In terms of the free energy change ΔG = ΔH − TΔS, this means that the lowering of enthalpy (negative ΔH) compensates the lowering of entropy (positive −TΔS), so ...
[9]
Structural and dynamics comparison of thermostability in ancient ...
Rationally engineering thermostability in proteins would create enzymes and receptors that function under harsh industrial applications.Missing: definition | Show results with:definition
[10]
Protein thermal stability: hydrogen bonds or internal packing?
Increased thermostability is linked to increased hydrogen bonds and salt links, and better internal van der Waals’ packing, with hydrogen bonds showing a ...Introduction · Results · Protein Surface Composition
[11]
Thermal Adaptation of the Archaeal and Bacterial Lipid Membranes
The permeability of fatty acyl ester lipid membranes is highly temperature dependent and their phase-transition temperature is dependent on the fatty acid ...
[12]
Effects of pH and Salt Concentration on Stability of a Protein G ... - NIH
Jan 9, 2018 · It is widely known that a variation in pH and salt concentration can affect the thermal stability of proteins (4, 5, 6), indicating the ...
[13]
Effect of ionic strength and pH on the thermal and rheological ...
The interaction of proteins with water is known to have a major effect on its physicochemical properties. Other factors, such as pH, and ionic strength are also ...
[14]
Protein Design: From the Aspect of Water Solubility and Stability - PMC
The solubility and stability of proteins are affected by many extrinsic factors, such as pH, temperature, solvent, ionic strength, metal-ion cofactors, and the ...
[15]
Thermal unfolding methods in drug discovery - PMC - PubMed Central
May 16, 2023 · The melting temperature (Tm) (dotted line) can be defined as the midpoint of the transition, or the temperature at which 50% of the protein is ...Detection Methods Leveraged... · Fig. 3 · Analysis Of Thermal...
[16]
Optical Melting Measurements of Nucleic Acid Thermodynamics - PMC
The melting temperature is then plotted versus the concentration in a van't Hoff plot. The van't Hoff equation relates the melting temperature in kelvins (T ...Brief Theory Of Optical... · Experimental Design · Figure 2. Plots To...
[17]
Differential Scanning Calorimetry — A Method for Assessing the ...
It is performed using a differential scanning calorimeter that measures the thermal transition temperature (melting temperature; Tm) and the energy required to ...
[18]
Using circular dichroism collected as a function of temperature ... - NIH
Circular dichroism (CD) is an excellent spectroscopic technique for following the unfolding and folding of proteins as a function of temperature.
[19]
Analysis of protein stability and ligand interactions by thermal shift ...
The basic scheme of a thermal shift assay (Figure 1) involves incubation of natively folded proteins with SYPRO Orange dye in a 96-well PCR plate. Through a ...
[20]
Thermophilic Chassis-Enabled High-Throughput Selection of a ...
Oct 8, 2025 · Thermostable proteins show increased shelf life and performance at elevated temperatures and under harsh conditions, resulting in lower costs ...
[21]
A genetic reporter of thermal stress defines physiologic zones over a ...
Reporter gene expression was assessed every 2 h for 10 h, and at 24 h post-stress. Expression patterns were validated for selected temperatures. A transition ...
[22]
Calculation of Protein Folding Thermodynamics Using Molecular ...
The calculation of the protein stability curves (ΔGunf as a function of temperature) has been done through the Gibbs–Helmholtz equation (eq 1). 2.1. 1 ...
[23]
Hyperthermophilic Enzymes: Sources, Uses, and Molecular ...
The molecular mechanisms involved in protein thermostabilization are discussed, including ion pairs, hydrogen bonds, hydrophobic interactions, disulfide bridges ...
[24]
The structure of Pyrococcus furiosus glutamate dehydrogenase ...
The glutamate dehydrogenase (GluDH) from this organism accounts for up to 20% of the total cell protein and is extremely thermostable, with a half-life at 100°C ...
[25]
Protein thermostability above 100°C: A key role for ionic interactions
A prominent role for ion pairs in stabilization of proteins at or above 100°C, where the hydrophobic effect is minimal (10), has been inferred.
[26]
The universality of enzymatic rate–temperature dependency
Adaptation of enzymes to temperature · Universality of enzymatic Q10 values · Nonenzymatic 'Q10' values and rate accelerations · Why do rate accelerations decrease ...
[27]
Taq Polymerase - an overview | ScienceDirect Topics
At its optimal temperature (72°C), nucleotides are incorporated at a rate of 2–4 kilobases per minute. However, polymerases are active over a broad temperature ...
[28]
Protein Adaptations in Archaeal Extremophiles - PMC - NIH
Hyperthermophiles can grow optimally up to 105°C, whereas thermophiles are classified as growing between 50°C and 70°C. At such extreme temperatures, proteins ...
[29]
High-throughput quantification of protein structural change reveals ...
Feb 13, 2020 · Hydrogen bonds and salt bridges that increase stability and protect against heat-induced denaturation were more abundant in proteins from warm- ...
[30]
MELTING, a flexible platform to predict the melting temperatures of ...
May 16, 2012 · The formula for the melting temperature depends on the oligonucleotide ... temperature of DNA, its GC content and concentration of sodium ions in ...
[31]
Functional biology and biotechnology of thermophilic viruses
In 2005, another thermostable RNA ligase 1 from the unclassified virus Thermus phage Ph2119, TS2126 RNA ligase, was also characterized [19,62]. The TS2126 ...Introduction · Dna Polymerases · Endolysins
[32]
Gel to liquid-crystalline phase transitions of lipids and membranes ...
These lipids and membranes underwent thermotropic phase transitions at different temperatures depending on the thermal properties of their constituent fatty ...Missing: saturated | Show results with:saturated
[33]
Thermostable enzymes and polysaccharides produced by ...
Bulgarian hot springs bacteria produce thermostable enzymes like gellan lyase, xylanase, and lipase, and exopolysaccharides (EPS) with high thermostability.
[34]
High-fidelity amplification using a thermostable DNA polymerase ...
Our results indicate that PCR performed with the DNA polymerase purified from P. furiosus yields amplification products containing less than 10% of the number ...Missing: original paper
[35]
Recent advances in phytase thermostability engineering towards ...
Nov 1, 2024 · Phytases are a class of digestive enzymes applied as a feed additive for monogastric animals, which lack the enzyme to release phosphate in ...
[36]
Heating as a rapid purification method for recovering correctly ...
Heat treatment can simplify the purification protocol of thermotolerant proteins as well as remove any soluble aggregate.
[37]
Thermostable Cellulases / Xylanases From Thermophilic ... - Frontiers
Many thermophilic bacteria have produced thermostable cellulolytic enzymes. These include Bacillus, Geobacillus, Caldibacillus, Acidothermus, Caldocellum, and ...
[38]
Evaluation of thermo-stability of bluetongue virus recombinant VP7 ...
To use the rVP7 antigen in ELISA kit format and supply the kits to different laboratories in a tropical country like India, it is essential that the ...
[39]
Thermostable lamprey variable lymphocyte receptor antibody ... - NIH
May 17, 2025 · This HRP-2-specific VLR antibody shows promise for improved malaria diagnostics, particularly in tropical regions requiring heat-stable tests.Missing: field climates
[40]
Bioluminescence in Clinical and Point-of-Care Testing - MDPI
This review highlights the role of bioluminescent proteins in medical diagnostics and their application in POCT platforms.
[41]
Development of a thermostable nanoemulsion adjuvanted vaccine ...
Adjuvants have the potential to increase the efficacy of protein-based vaccines but need to be maintained within specific temperature and storage conditions.
[42]
Development of a more thermostable poliovirus vaccine - PubMed
The substitution of deuterium oxide for water in the final blending stage of vaccine production resulted in a significantly more stable product at temperatures ...
[43]
Highly Stable Liposomes Based on Tetraether Lipids as a Promising ...
Oct 9, 2022 · This study investigated the feasibility and stability of liposomes containing tetraether lipids (TEL) from Thermoplasma acidophilum.
[44]
Lyophilized, antigen-bound liposomes with reduced MPLA ... - NIH
The lyophilized Pfs25 and CoPoP liposomes exhibited thermostability with respect to size, biochemical integrity, binding capacity, protein folding and ...
[45]
Heat-Stable Insulins: Any Progress? - PMC - NIH
Dec 13, 2024 · Heat-stable insulins aim to protect the insulin molecule from degradation while being exposed over prolonged periods to environmental heat and/ ...
[46]
Frequent exposure to suboptimal temperatures in vaccine cold-chain system in India: results of temperature monitoring in 10 states - PMC
### Summary of Suboptimal Temperatures, Heat Exposure, and Potency Loss in Vaccine Cold Chains in Low-Resource Settings (India)
[47]
[PDF] Vaccine Storage and Handling Toolkit - January 2023 - CDC
Mar 29, 2024 · Vaccines exposed to storage temperatures outside the recommended ranges may have reduced potency, creating limited protection and resulting in ...
[48]
Discovering Life in Yellowstone Where Nobody Thought it Could Exist
Nov 8, 2018 · He found microbes in all of these extremely hot environments, including a previously unknown species that Brock named Thermus aquaticus, with ...
[49]
Hyperthermophilic Enzymes: Sources, Uses, and Molecular ...
A current working hypothesis is that hyperthermophilic enzymes are more rigid than their mesophilic homologues at mesophilic temperatures and that rigidity is a ...
[50]
Metagenomic mining and structure-function studies of a hyper ...
Mar 22, 2022 · Here we report a highly-thermostable GH 6 CBH II and its variants obtained by a metagenomic approach from a hot spring sediment. The enzymes ...
[51]
Discovery of a Thermostable GH10 Xylanase with Broad Substrate ...
We describe here the characterization of AMOR_GH10A, a thermostable GH10 xylanase from a deep-sea metagenomic data set originating from the hot vents at the ...
[52]
Metagenomics of Thermophiles with a Focus on Discovery of Novel ...
In this review, we summarize the main approaches commonly utilized for assessing the taxonomic and functional diversity of thermophiles through metagenomics.
[53]
appraisal of the enzyme stability-activity trade-off - Oxford Academic
A longstanding idea in evolutionary physiology is that an enzyme cannot jointly optimize performance at both high and low temperatures due to a trade-off ...
[54]
Understanding activity-stability tradeoffs in biocatalysts by enzyme ...
Feb 28, 2024 · For enzymes, local flexibility is required at the active site to achieve catalytic activity, however excessive mobility renders them susceptible ...
[55]
Bioprospecting - Yellowstone National Park (U.S. National Park ...
Apr 18, 2025 · Yellowstone's extremophiles, especially thermophiles, have been the subject of scientific research and discovery for more than 100 years.
[56]
[PDF] DIRECTED EVOLUTION OF ENZYMES AND BINDING PROTEINS
Oct 3, 2018 · In the seminal paper (4), Arnold had mastered the whole work flow for directed evolution of enzymes, a methodology relying on several parts ...
[57]
Directed evolution of a thermostable esterase - PMC - NIH
We have used in vitro evolution to probe the relationship between stability and activity in a mesophilic esterase.
[58]
Directed evolution converts subtilisin E into a functional equivalent ...
Directed evolution provides a powerful tool to unveil mechanisms of thermal adaptation and is an effective and efficient approach to increasing thermostability ...Directed Evolution Converts... · Random Mutagenesis... · DiscussionMissing: seminal | Show results with:seminal<|control11|><|separator|>
[59]
Enhancing thermostability of maltogenic amylase from Bacillus ...
Jun 29, 2006 · DNA shuffling was used to improve the thermostability of maltogenic amylase from Bacillus thermoalkalophilus ET2. Two highly thermostable ...
[60]
Optimization of DNA Shuffling for High Fidelity Recombination
Abstract. A convenient 'DNA shuffling' protocol for random recombination of homologous genes in vitro with a very low rate of associated point mutagenesis.Missing: thermophiles | Show results with:thermophiles
[61]
Accurate Prediction of Enzyme Thermostabilization with Rosetta ...
Jan 16, 2023 · We combine global conformational sampling with energy prediction using AlphaFold and Rosetta to develop a new computational protocol for the quantitative ...1. Introduction · 2. Methods · Figure 3
[62]
Rational Design of Pepsin for Enhanced Thermostability ... - Frontiers
Rigidifying loops combined with saturation mutagenesis, proline substitutions, and ΔΔG Δ Δ G calculations in Rosetta have been applied to the thermostability ...
[63]
Enhancing subtilisin thermostability through a modified normalized ...
We designed a new B-FIT strategy that combines modified normalized B-factor analysis with a loop grafting strategy to enhance protein thermostability (Fig. 1).
[64]
Modulating protein stability – directed evolution strategies for ...
May 26, 2013 · Often, the functional adaptation or optimization of a protein through directed evolution produces a less than desirable result.Missing: seminal | Show results with:seminal
[65]
Investigation and Follow-Up of a Staphylococcal Food Poisoning ...
Dec 19, 2020 · It is caused by the ingestion of preformed staphylococcal enterotoxins (SEs), thermostable proteins produced by enterotoxigenic strains of ...
[66]
Effect of heat treatment on activity of staphylococcal enterotoxins of ...
Staphylococcal enterotoxins are active after boiling for 30 min and may remain stable at 121°C for 28 min (Bhunia, 2008; Fernandes, 2009). Claeys et al. (2013) ...
[67]
Clostridium botulinum neurotoxin type B is heat-stable in milk and ...
Dec 8, 2010 · This study reports that conventional milk pasteurization (63 °C, 30 min) inactivated BoNT serotype A; however, serotype B is heat-stable in milk and not ...
[68]
Staphylococcal Enterotoxins - PMC - NIH
They are by and large elliptical in shape and have two major unequal domains composed mostly of β strands and a few α-helices. The two domains are separated ...
[69]
Thermal stability and structural changes in bacterial toxins ...
Feb 16, 2017 · Taken together, the data suggests that the family of staphylococcal enterotoxins have different ability to withstand heat, and thus the exact ...Missing: boiling | Show results with:boiling
[70]
Study on the Growth and Enterotoxin Production by Staphylococcus ...
Since it is well known that following heat treatment, staphylococcal enterotoxins, although still active (in in vivo assays), can be undetectable (loss of ...
[71]
Isolation and identification of enterotoxigenic Staphylococcus ... - PMC
Jan 21, 2019 · The Staphylococcal enterotoxins are one of the most potent food-borne toxins and requires very low concentration ranging from 20 ng to 1 µg for ...
[72]
[PDF] Staphylococcal Enterotoxins Detection Methods - FDA
Sep 1, 2022 · Staphylococcal enterotoxins are heat stable and not denatured unless exposed to high temperatures for long periods, i.e., autoclave at 121°C ...<|separator|>
[73]
Fever and the thermal regulation of immunity - PubMed Central - NIH
Here, we review our current understanding of how the inflammatory cues delivered by the thermal element of fever stimulate innate and adaptive immune responses.
[74]
Fever as an evolutionary agent to select immune complexes interfaces
May 11, 2022 · We argue for an evolutionary pressure for the types of residues at these protein interfaces that may explain the role of fever as a selective force.