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Thiamine pyrophosphate

Thiamine pyrophosphate (TPP), also known as thiamine diphosphate (TDP) or cocarboxylase, is the biologically active coenzyme form of vitamin B₁ (thiamine), essential for metabolic processes in all living organisms.^[1] It consists of a thiazolium ring linked to a pyrimidine moiety via a methylene bridge, with a pyrophosphate group attached to the pyrimidine, enabling its role as an electrophilic catalyst in enzymatic reactions.^[2] TPP functions primarily as a cofactor in the decarboxylation of α-keto acids and transketolase reactions, facilitating the transfer of carbon units in key metabolic pathways.^[1]^[2] In carbohydrate metabolism, TPP is vital for enzymes such as pyruvate dehydrogenase, which converts pyruvate to acetyl-CoA for entry into the citric acid cycle; α-ketoglutarate dehydrogenase, which operates within the citric acid cycle; and transketolase, which functions in the pentose phosphate pathway to generate NADPH and ribose-5-phosphate.^[1] It also supports branched-chain α-keto acid dehydrogenase in amino acid catabolism and acetohydroxyacid synthase in the biosynthesis of branched-chain amino acids in plants and microorganisms.^[1] Additionally, TPP participates in α-keto decarboxylases, such as pyruvate decarboxylase during yeast fermentation, and in peroxisomal fatty acid breakdown via 2-hydroxyacyl-CoA lyase 1.^[1] These roles underscore TPP's importance in ATP production, nucleotide synthesis, and overall energy homeostasis.^[1] TPP's mechanism involves the thiazolium ring's C2 carbon acting as a nucleophile, forming a resonance-stabilized enamine intermediate after substrate addition and decarboxylation, which then transfers acyl groups or aldehyde units to acceptors.^[2] In animals, TPP is derived from dietary thiamine, which is phosphorylated in the liver and intestines, while deficiencies can lead to conditions like beriberi and Wernicke-Korsakoff syndrome due to impaired enzyme function.^[3] The cofactor is predominantly localized in mitochondria for oxidative processes and is conserved across kingdoms, highlighting its evolutionary significance.^[1]

Overview

Definition and Biological Role

Thiamine pyrophosphate (TPP), also known as thiamine diphosphate (TDP), is the active coenzyme form of thiamine (vitamin B1), formed by phosphorylation of the hydroxyl group on the 2-hydroxyethyl side chain attached to the thiazolium ring.^[4] This derivative serves as an essential cofactor in multiple enzymatic reactions central to cellular metabolism across all living organisms.^[1] Its molecular formula is C₁₂H₁₉N₄O₇P₂S, with a molar mass of 425.34 g/mol.^[5] TPP plays a critical biological role in energy metabolism, particularly by facilitating the decarboxylation of α-keto acids—such as pyruvate and α-ketoglutarate—and the transfer of aldehyde groups in non-oxidative pathways like the pentose phosphate pathway.^[4] These functions support the production of ATP, NADPH, and precursors for nucleic acid and fatty acid synthesis, underscoring TPP's involvement in carbohydrate, lipid, and amino acid catabolism.^[1] In eukaryotic cells, TPP is synthesized in the cytosol by thiamine pyrophosphokinase and subsequently transported to mitochondria and other compartments to associate with enzymes like pyruvate dehydrogenase and transketolase.^[6] As the predominant form of thiamine in biological systems, TPP accounts for approximately 80-90% of total thiamine content in cells and whole blood, reflecting its high demand for maintaining metabolic homeostasis.^[7] Deficiency in TPP leads to impaired energy production and neurological dysfunction, highlighting its indispensable presence in prokaryotes, plants, and animals.^[4]

Historical Background

Thiamine, initially recognized for its role in preventing beriberi, was first isolated in 1910 by Japanese chemist Umetaro Suzuki from rice bran extracts, where he identified a water-soluble nutrient he termed aberic acid, capable of curing the disease in animal models.^[8] This marked the earliest extraction of what would later be known as thiamine, though Suzuki's work received limited international attention at the time.^[9] The compound's significance as an essential nutrient was further established in the early 20th century through studies on beriberi etiology. In 1912, Polish biochemist Casimir Funk isolated an impure form of the anti-beriberi factor from rice bran and coined the term "vitamine" to describe such vital amines, laying foundational concepts for vitamin research.^[10] Pure crystalline thiamine was successfully isolated in 1926 by Dutch chemists Barend Coenraad Petrus Jansen and Willem Frederik Donath from rice bran, confirming its identity and paving the way for structural analysis.^[11] The identification of thiamine pyrophosphate (TPP) as the active coenzyme form advanced in the 1930s amid investigations into carbohydrate metabolism. In 1936–1937, British biochemist Rudolf Peters utilized thiamine-deficient pigeons to demonstrate that TPP restores pyruvate decarboxylation in brain tissue, establishing its essential coenzyme function in oxidative processes.^[12] Concurrently, in 1937, German biochemists Karl Lohmann and Philipp Schuster isolated cocarboxylase from yeast and elucidated its structure as the pyrophosphate derivative of thiamine, linking it directly to enzymatic decarboxylation reactions.^[13] Key milestones in TPP research paralleled broader coenzyme discoveries, such as Fritz Lipmann's identification of coenzyme A in the 1940s, which earned him the 1953 Nobel Prize in Physiology or Medicine for its role in intermediary metabolism—efforts that highlighted the era's shift toward understanding phosphorylated cofactors.^[14] In the 1950s, Efraim Racker confirmed TPP's role as the coenzyme for transketolase, a key enzyme in the pentose phosphate pathway, through purification and reconstitution studies with yeast extracts. Recent advancements include a 2025 cryo-electron microscopy structure of human thiamine pyrophosphokinase 1 (TPK1) bound to thiamine at 2.1 Å resolution, revealing detailed mechanistic insights into TPP biosynthesis and potential sites for therapeutic intervention in thiamine-related disorders.^[15]

Chemical Structure and Properties

Molecular Structure

Thiamine pyrophosphate (TPP), the active coenzyme form of thiamine (vitamin B₁), has the molecular formula C₁₂H₁₉N₄O₇P₂S and a molecular weight of 425.34 g/mol. Its systematic IUPAC name is 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[2-(diphosphooxy)ethyl]-4-methyl-1,3-thiazol-3-ium, reflecting the core heterocyclic framework esterified with a diphosphate group.^[16] The molecule comprises two main heterocyclic rings linked by a methylene bridge: a thiazolium ring (a five-membered ring containing sulfur and a positively charged nitrogen) and a pyrimidine ring (a six-membered nitrogen-containing heterocycle). The thiazolium ring features a methyl group at the 2-position, a 2-hydroxyethyl group at the 5-position whose terminal primary alcohol is phosphorylated to form the pyrophosphate ester, and the methylene bridge attached at the 4-position connecting to the 5-position of the 4-amino-2-methylpyrimidine ring. The pyrophosphate group, -OP(O)(OH)OOP(O)(OH)₂, is attached via the primary alcohol of the 5-(2-hydroxyethyl) side chain on the thiazolium, providing electrostatic interactions for enzyme binding. Key functional groups include the quaternary nitrogen in the thiazolium ring, which imparts a positive charge essential for stabilizing reactive intermediates, and the C2 carbon of the thiazolium, whose proton is acidic (pKa ≈18) and facilitates carbanion (ylide) formation during catalysis. The amino group on the pyrimidine ring contributes to hydrogen bonding in cofactor recognition, while the pyrophosphate moiety enhances solubility and affinity for magnesium ions in enzyme active sites. TPP lacks chiral centers, rendering it achiral, with its rings adopting a largely planar conformation in isolation. However, upon binding to enzymes, it often assumes a V-shaped tertiary structure, where the thiazolium and pyrimidine rings fold toward each other, optimizing the reactive C2 position for substrate interaction. The structural formula can be represented as:

\begin{align*} &\text{Pyrimidine: 4-NH}_2\text{-2-CH}_3\text{-pyrimidine-5-CH}_2\text{- (methylene bridge)} \\ &\text{Thiazolium: N}^+\text{(bridge)-C(CH}_3\text{)=N-S-C(CH}_2\text{CH}_2\text{OP}_2\text{O}_6\text{H}_4\text{)=C(H)-} \end{align*}

This simplified depiction highlights the connectivity, with the full connectivity diagram available in crystallographic data from the Protein Data Bank (e.g., PDB ID: 2GDI).^[17]

Physical and Chemical Properties

Thiamine pyrophosphate (TPP) appears as a white to off-white crystalline powder. It is highly soluble in water (approximately 50 g/L at 20–25°C), which facilitates its handling in aqueous solutions and aids cellular transport in biological systems. TPP is slightly soluble in ethanol but insoluble in non-polar solvents such as ether or chloroform, reflecting its polar nature due to the charged thiazolium and pyrophosphate moieties. The compound decomposes upon heating around 220–240°C (decomposition) without exhibiting a distinct melting point, typically in its tetrahydrate form.^[18]^[19]^[20]^[21]^[22] Chemically, TPP demonstrates stability under acidic conditions (pH < 4), where it resists degradation, but it is sensitive to alkaline environments (pH > 8), undergoing hydrolysis of the pyrophosphate bond to yield thiamine monophosphate and inorganic phosphate. This pH-dependent stability arises from the labile phosphoanhydride linkage in the pyrophosphate group. Additionally, TPP exhibits UV absorbance with a maximum near 260 nm, primarily from the conjugated pyrimidine ring system, allowing spectrophotometric detection in analytical methods.^[23]^[24] The reactivity of TPP centers on its thiazolium ring, which exists in a protonated cationic form at physiological pH, promoting equilibrium that supports nucleophilic activity at the C2 position. The C2-H bond enables carbanion (ylide) formation under basic conditions, key to its chemical versatility. The pyrophosphate moiety features four ionizable groups with pKa values of approximately 0.9 (first phosphate), 2.0 (second phosphate primary), 6.3 (secondary), and 9.8 (terminal), influencing its ionization and metal-binding potential in neutral solutions.^[25]^[26]^[27] Isolation of TPP typically involves extraction from natural sources or synthesis starting from thiamine hydrochloride, which is phosphorylated in vitro using agents like phosphorus oxychloride or enzymatic methods with thiamine pyrophosphokinase and ATP to yield the diphosphate form, followed by purification via ion-exchange chromatography or crystallization as the chloride salt.^[28]^[29]

Biosynthesis and Metabolism

De Novo Synthesis in Prokaryotes and Plants

Thiamine pyrophosphate (TPP) biosynthesis in prokaryotes and plants proceeds through a branched de novo pathway that independently assembles the 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) and 5-(2-hydroxyethyl)-4-methylthiazole (THZ) moieties, which are subsequently coupled and phosphorylated to yield TPP. This process occurs primarily in the cytosol and chloroplasts of plants and in the cytoplasm of prokaryotes, enabling these organisms to produce the essential cofactor without external supply. The pathway is evolutionarily conserved between prokaryotes and plants for the HMP branch but diverges in the THZ branch, reflecting adaptations in sulfur mobilization. Seminal studies have elucidated the enzymatic steps, highlighting the role of radical mechanisms and carrier proteins in ring formation.^[30] The HMP branch begins with 5-aminoimidazole ribotide (AIR), an intermediate from purine biosynthesis, which serves as the substrate for ThiC, a radical S-adenosylmethionine (SAM) enzyme containing a [4Fe-4S] cluster. ThiC catalyzes a complex rearrangement of AIR to form HMP in a single step, with all atoms derived from AIR. This reaction is rate-limiting and highly conserved, with plant ThiC (e.g., in Arabidopsis) sharing over 50% sequence identity with bacterial counterparts from Escherichia coli and Bacillus subtilis. The resulting HMP is then phosphorylated by the bifunctional kinase ThiD to 4-amino-5-hydroxymethyl-2-methylpyrimidine monophosphate (HMP-P), followed by a second phosphorylation to HMP diphosphate (HMP-PP), preparing it for coupling. In plants, this branch is localized to chloroplasts, integrating with purine metabolism for efficient flux.^[31]^[30] The THZ branch exhibits variation between prokaryotes and plants. In prokaryotes such as E. coli, synthesis starts from 1-deoxy-D-xylulose 5-phosphate (DXP), produced by Dxs from pyruvate and glyceraldehyde-3-phosphate, along with cysteine as the sulfur and carbon source. Enzymes including ThiI (a radical SAM protein), ThiF, ThiS (a ubiquitin-like sulfur carrier), and ThiG assemble the ring through dehydroglycine formation from cysteine and rearrangement of DXP to the hydroxyethyl side chain, yielding 5-(2-hydroxyethyl)-4-methylthiazole phosphate (THZ-P); in some Gram-positive bacteria like B. subtilis, ThiM and ThiW directly condense DXP and cysteine. In plants, the pathway diverges, utilizing NAD+ and glycine as carbon and nitrogen donors, with the thiazole synthase Thi1 (THI4 homolog) providing sulfur from its active-site cysteine residue in a single-turnover suicide mechanism, assisted by a NUDIX hydrolase to form THZ-P (also termed HET-P) in the chloroplast. This plant-specific strategy avoids cysteine depletion, linking thiazole production to NAD metabolism.^[30] Coupling of the moieties occurs via thiamine monophosphate synthase (ThiE), which condenses HMP-PP and THZ-P to form thiamine monophosphate (TMP) through nucleophilic attack and pyrophosphate release, a reaction conserved across prokaryotes and plants. Finally, ThiL, an ATP-dependent kinase, phosphorylates TMP at the 5'-hydroxyl of the THZ moiety to produce TPP. This kinase is essential, as disruptions lead to thiamine auxotrophy.^[30] In prokaryotes, biosynthesis is tightly regulated by TPP-sensing riboswitches in the 5' untranslated regions of thi operons (e.g., thiCEFSGH and thiMD), where TPP binding induces conformational changes to terminate transcription or inhibit translation, preventing overproduction. Plants employ distinct feedback mechanisms, such as allosteric regulation of ThiC by TPP, but lack riboswitches. These controls ensure balanced cofactor levels in response to metabolic demand.^[32]

Activation in Animals and Humans

In animals and humans, which lack the ability to synthesize thiamine de novo, the vitamin is obtained from dietary sources and undergoes activation primarily through phosphorylation in enterocytes and peripheral tissues. Thiamine is absorbed in the proximal small intestine via carrier-mediated active transport involving the proton-coupled transporters SLC19A2 (also known as THTR1) and SLC19A3 (THTR2), which facilitate the uptake of free thiamine across the apical membrane of enterocytes at physiological concentrations.^[33]^[34] Once inside the enterocytes, thiamine is rapidly phosphorylated to thiamine pyrophosphate (TPP) by the enzyme thiamine pyrophosphokinase 1 (TPK1), which catalyzes the direct transfer of a pyrophosphoryl group from a nucleoside triphosphate donor—preferentially uridine triphosphate (UTP) over adenosine triphosphate (ATP)—to the 5'-hydroxyl group of thiamine, yielding TPP and uridine monophosphate (UMP) or AMP, respectively. This step traps thiamine intracellularly due to the charged nature of TPP, preventing its efflux.^[35] To enter the systemic circulation, cytosolic TPP is dephosphorylated by nonspecific alkaline phosphatases to thiamine monophosphate (TMP), which is then further dephosphorylated to free thiamine for basolateral export via an unidentified transporter.^[36] Circulating free thiamine (predominantly bound to albumin) is taken up by peripheral cells through SLC19A2 and SLC19A3, where it is again converted to TPP by cytosolic TPK1.^[33] Approximately 80% of absorbed thiamine is ultimately converted to TPP, the biologically active form required as a cofactor for enzymes in carbohydrate metabolism.^[37] The recommended daily intake for adults is 1.1 mg for women and 1.2 mg for men, sufficient to maintain tissue stores and support this activation process.^[3] TPK1 functions as a homodimeric enzyme, with each subunit featuring an α/β domain and a β-sandwich domain that form a central mixed β-sheet, and its activity is magnesium-dependent, requiring Mg²⁺ ions to coordinate the nucleotide substrate.^[38]^[39] The preference for UTP as a substrate links TPP biosynthesis to pyrimidine metabolism, as depletion of pyrimidines reduces TPP production and impairs mitochondrial function. Once synthesized, cytosolic TPP is transported into mitochondria—the site of key TPP-dependent enzymes like pyruvate dehydrogenase—via the specific carrier protein encoded by SLC25A19.^[40] TPK1 activity is tightly regulated by product inhibition from TPP, which binds to the enzyme and prevents overaccumulation of the cofactor, thereby maintaining cellular homeostasis.^[39] Mutations in the TPK1 gene disrupt this process, leading to thiamine metabolism dysfunction syndrome 5 (THMD5), an autosomal recessive disorder characterized by early-onset encephalopathy, lactic acidosis, and progressive neurodegeneration due to insufficient TPP availability.^[41]^[42]

Biochemical Functions

Role in Decarboxylation Reactions

Thiamine pyrophosphate (TPP) serves as a critical coenzyme in the oxidative decarboxylation of α-keto acids, enabling the conversion of these substrates into their corresponding acyl groups while releasing carbon dioxide.^[43] This function is primarily mediated through multi-enzyme complexes where TPP binds to the decarboxylase subunit, facilitating the initial decarboxylation step.^[44] TPP also serves as a cofactor in non-oxidative decarboxylation reactions, notably in pyruvate decarboxylase, which catalyzes the decarboxylation of pyruvate to acetaldehyde and CO₂ during alcoholic fermentation in yeast and certain bacteria.^[1] Among the key enzymes, the pyruvate dehydrogenase (PDH) complex utilizes TPP to catalyze the decarboxylation of pyruvate to acetyl-CoA, linking glycolysis to the tricarboxylic acid (TCA) cycle.^[45] Similarly, the α-ketoglutarate dehydrogenase (KGDH) complex, also known as the oxoglutarate dehydrogenase complex, employs TPP for the decarboxylation of α-ketoglutarate to succinyl-CoA within the TCA cycle.^[43] The branched-chain α-keto acid dehydrogenase (BCKDH) complex relies on TPP to decarboxylate branched-chain α-keto acids derived from amino acid catabolism, producing acyl-CoA derivatives essential for energy metabolism.^[46] In these reactions, TPP promotes irreversible decarboxylation by forming a stabilized enamine intermediate after CO₂ release, which prevents reversal and allows subsequent transfer of the acyl group to lipoamide or other acceptors.^[47] This stabilization arises from the thiazolium ring of TPP, which delocalizes electrons in the enamine form.^[48] The metabolic significance of TPP in these decarboxylations is profound, as it is indispensable for ATP production by bridging carbohydrate breakdown to the TCA cycle and oxidative phosphorylation; disruptions, such as in PDH deficiency, result in pyruvate accumulation and lactic acidosis.^[49] For instance, congenital PDH deficiencies often manifest as severe lactic acidosis, with some cases responsive to high-dose thiamine supplementation due to impaired TPP utilization.^[50] A representative example occurs in the PDH complex, where TPP binds to the E1 subunit (pyruvate dehydrogenase), enabling the formation of hydroxyethyl-TPP as the enamine intermediate from decarboxylated pyruvate.^[51] This binding is magnesium-dependent and positions the substrate for nucleophilic attack by the TPP ylide.^[52]

Role in Transketolase and Pentose Phosphate Pathway

Thiamine pyrophosphate (TPP) serves as a crucial cofactor for transketolase, an enzyme in the non-oxidative branch of the pentose phosphate pathway (PPP), where it facilitates the reversible transfer of two-carbon units, such as glycolaldehyde, from donor ketoses like xylulose 5-phosphate to acceptor aldoses like ribose 5-phosphate or erythrose 4-phosphate.^[53] This activity generates essential intermediates, including sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate, which help produce ribose 5-phosphate for nucleotide biosynthesis and interconnect the PPP with glycolysis to balance carbon flux.^[1] By enabling these transfers, TPP-dependent transketolase supports the pathway's role in providing precursors for NADPH production in the oxidative branch and maintaining metabolic flexibility across tissues.^[54] In erythrocytes, TPP-bound transketolase integrates the PPP with glucose oxidation, channeling a portion of glucose-6-phosphate through the pathway to generate NADPH, which is vital for regenerating reduced glutathione and protecting against oxidative stress.^[55] TPP deficiency disrupts this process, impairing PPP flux and exacerbating oxidative damage due to reduced NADPH availability.^[53] Beyond the PPP, TPP functions in other enzymes involved in carbon-carbon bond cleavage or formation. For instance, 2-hydroxyphytanoyl-CoA lyase (HACL1), a peroxisomal enzyme, relies on TPP to catalyze the α-oxidation of 3-methyl-branched fatty acids, such as phytanic acid, by cleaving 2-hydroxyphytanoyl-CoA into pristanal and formyl-CoA, a step essential for degrading these lipids.^[56] In bacteria, acetolactate synthase uses TPP to initiate branched-chain amino acid biosynthesis, condensing two pyruvate molecules into acetolactate, a precursor for valine, leucine, and isoleucine production.^[57] The specificity of TPP in these reactions stems from its thiazolium ring, which deprotonates to form a carbanion that acts as an electron sink, enabling umpolung reactivity where the carbonyl carbon of aldehydes becomes nucleophilic and facilitates efficient two-carbon transfers without decarboxylation.^[58]

Reaction Mechanisms

Decarboxylation Mechanism

Thiamine pyrophosphate (TPP) facilitates the decarboxylation of α-keto acids in enzymes such as pyruvate dehydrogenase (PDH) through a series of nucleophilic and proton transfer steps, enabling the irreversible release of CO₂ and formation of reactive intermediates for subsequent acyl transfer.^[59] The mechanism begins with the deprotonation of the C2 position of the thiazolium ring in TPP by a conserved glutamate residue acting as a base in the enzyme's active site, generating a nucleophilic ylide (carbanion) that is stabilized by the positively charged thiazolium nitrogen. This ylide performs a nucleophilic attack on the carbonyl carbon of the α-keto acid substrate, such as pyruvate, forming a covalent C2-α-lactyl-TPP (LThDP) adduct as the initial hydroxyalkyl-TPP intermediate.^[59] Subsequent decarboxylation of the LThDP intermediate occurs spontaneously or with enzymatic assistance, releasing CO₂ and yielding a hydroxyethyl-TPP (HEThDP) species that tautomerizes to the resonance-stabilized enamine form (also termed hydroxyethylidene-TPP or C2α-carbanion), which serves as the active nucleophile for downstream reactions. This step is depicted in the key equation for pyruvate:

\text{Pyruvate} + \text{TPP} \rightarrow \text{hydroxyethylidene-TPP} + \text{CO}_2

The kinetics of this decarboxylation are pH-dependent, with optimal activity observed between pH 7.0 and 7.5 across a broad range from 5.5 to 9.5, reflecting the influence of pH on TPP's tautomeric and ionization states (e.g., anionic pre-protonated, neutral, and protonated forms).^[60]^[59] In the third step, the enamine intermediate in PDH reduces the lipoamide cofactor on the E2 subunit, transferring the acyl group to form S-acetyldihydrolipoamide and regenerating TPP for the next catalytic cycle; the overall transformation converts the α-keto acid R-C(O)-COOH to R-C(O)-S-CoA via the transient R-CH(OH)-TPP intermediate.^[59] A similar mechanism operates in α-ketoglutarate dehydrogenase (KGDH), where TPP mediates decarboxylation of α-ketoglutarate to a succinyl-enamine intermediate, but with transfer to form succinyl-CoA rather than acetyl-CoA, highlighting substrate-specific adaptations in the acyl chain length.^[61]

Transfer Mechanisms in Carbonyl Condensations

In the transfer mechanisms of carbonyl condensations facilitated by thiamine pyrophosphate (TPP), the cofactor's thiazolium C2 ylide serves as a nucleophile that attacks the carbonyl carbon of a donor aldehyde or ketone, forming a covalent addition intermediate known as hydroxyalkylidene-TPP.^[62] This process enables reversible C-C bond cleavage and formation without net decarboxylation, distinguishing it from TPP's roles in irreversible decarboxylative pathways. In transketolase, TPP mediates the transfer of a two-carbon glycoaldehyde unit from a donor ketose, such as xylulose-5-phosphate, to an acceptor aldose, like ribose-5-phosphate. The donor binds to the enzyme, and the TPP ylide adds to the C2 carbonyl of the ketose, generating the hydroxyalkylidene-TPP intermediate; subsequent C-C bond cleavage releases the acceptor-bound product while forming a TPP-bound enediol intermediate that carries the transferred unit.^[62] This enediol then attacks the carbonyl of the acceptor aldose, completing the condensation and regenerating the ylide after protonation. A representative reaction catalyzed by transketolase is the interconversion in the non-oxidative pentose phosphate pathway:

\text{Sedoheptulose-7-P} + \text{glyceraldehyde-3-P} \rightleftharpoons \text{ribose-5-P} + \text{xylulose-5-P}

This equilibrium proceeds via the TPP-bound enediol intermediate, ensuring stereospecific transfer of the glycoaldehyde moiety.^[62] Stabilizing factors in these mechanisms include the Mg²⁺ cofactor, which coordinates the pyrophosphate moiety of TPP to enhance ylide nucleophilicity and substrate binding, as well as enzyme residues like glutamate and histidine that facilitate stereospecific proton abstraction from the intermediate. In bacterial variants, such as acetoin formation in Acetobacter aceti, TPP similarly enables the condensation of two acetaldehyde molecules into acetoin through an analogous addition-cleavage-transfer sequence, requiring Mg²⁺ for activity and proceeding irreversibly under physiological conditions.

Clinical and Physiological Significance

Involvement in Key Metabolic Pathways

Thiamine pyrophosphate (TPP) plays a pivotal role in energy metabolism by serving as a cofactor for key enzyme complexes that bridge glycolysis to the tricarboxylic acid (TCA) cycle and facilitate amino acid catabolism. In the pyruvate dehydrogenase complex (PDH), TPP enables the decarboxylation of pyruvate derived from glycolysis, generating acetyl-CoA that enters the TCA cycle for further oxidation. Similarly, in the α-ketoglutarate dehydrogenase complex (KGDH), TPP supports the decarboxylation of α-ketoglutarate within the TCA cycle, ensuring the production of reducing equivalents (NADH and FADH₂) that drive oxidative phosphorylation. This linkage is essential, as oxidative phosphorylation accounts for approximately 90% of cellular ATP production in aerobic tissues. Additionally, TPP functions in the branched-chain α-keto acid dehydrogenase complex (BCKDH), which decarboxylates α-keto acids from leucine, isoleucine, and valine catabolism, integrating amino acid breakdown into energy-yielding pathways and preventing toxic accumulation of intermediates.^[63]^[64] In the pentose phosphate pathway (PPP), TPP-dependent transketolase catalyzes the non-oxidative branch, transferring carbon units between sugar phosphates to generate ribose-5-phosphate for nucleotide synthesis and glyceraldehyde-3-phosphate that feeds back into glycolysis. This branch complements the oxidative phase of the PPP, which produces NADPH, thereby supporting reductive biosynthesis of fatty acids, cholesterol, and nucleotides while maintaining redox balance against oxidative stress. The TPP-mediated reactions ensure flexible flux through the PPP, adapting to cellular demands for either NADPH or pentose sugars without net ATP production.^[65] Beyond central metabolism, TPP contributes to specialized pathways such as the α-oxidation of phytanic acid in peroxisomes, where it acts as a cofactor for 2-hydroxyphytanoyl-CoA lyase, cleaving 2-hydroxyphytanoyl-CoA to facilitate the removal of the 3-methyl group and prevent lipid accumulation in disorders like Refsum disease. In prokaryotes, TPP supports anaerobic fermentation, notably in the conversion of pyruvate to acetoin via TPP-dependent pyruvate decarboxylase and α-acetolactate synthase, regenerating NAD⁺ and maintaining redox homeostasis during glucose catabolism in bacteria like Clostridium and Lactobacillus. TPP concentrations are highest in metabolically active organs such as the brain, liver, and heart, reflecting their reliance on oxidative metabolism, primarily accumulated in mitochondria due to efficient transport via the mitochondrial TPP transporter (SLC25A19).^[66]^[67] Recent research as of 2025 has highlighted TPP's potential in mitigating lactate overproduction in conditions like sepsis by restoring mitochondrial function.^[68] Human thiamine homeostasis involves a total body pool of 25–30 mg, with a daily turnover of approximately 1 mg to sustain metabolic functions, as evidenced by the recommended dietary intake of 1.1–1.2 mg/day for adults. Excess TPP is phosphorylated from dietary thiamine and distributed via blood, but renal filtration excretes about 50% of the daily turnover as free thiamine or metabolites like thiamine monophosphate and pyrimidine derivatives when intake exceeds needs, preventing overload while conserving the pool during deficiency.^[36]^[69]

Deficiency and Associated Disorders

Thiamine pyrophosphate (TPP) deficiency primarily results from inadequate dietary intake, such as diets reliant on polished rice or processed grains that lack thiamine, chronic alcoholism which impairs absorption and increases requirements, and malabsorption conditions including Crohn's disease.^[70] Rare genetic causes involve mutations in the TPK1 gene encoding thiamine pyrophosphokinase, leading to thiamine metabolism dysfunction syndrome that is often lethal in infancy due to severe neurological impairment.^[71] The most prominent disorders linked to TPP insufficiency are beriberi, presenting in wet form with cardiovascular complications like edema and heart failure, and dry form with neurological symptoms such as peripheral neuropathy and muscle wasting.^[70] Wernicke-Korsakoff syndrome, a neuropsychiatric condition featuring acute confusion, ataxia, and chronic memory loss, frequently arises in the context of alcoholism-related thiamine depletion.^[72] Pyruvate dehydrogenase (PDH) complex deficiency, dependent on TPP as a cofactor, can manifest as lactic acidosis with elevated blood lactate levels due to blocked pyruvate conversion to acetyl-CoA.^[73] Common symptoms include fatigue, irritability, peripheral neuropathy with paresthesia and weakness, and in severe cases, heart failure or encephalopathy. Diagnostic laboratory markers focus on erythrocyte transketolase activity, where an increase greater than 15-20% upon TPP addition indicates deficiency by revealing unsaturated enzyme apo-forms.^[74] Treatment centers on prompt thiamine repletion with high-dose regimens, such as 100-500 mg intravenously three times daily initially, transitioning to oral maintenance to reverse symptoms and prevent progression.^[75] Benfotiamine, a synthetic S-acyl derivative with enhanced bioavailability, is used for chronic supplementation to improve tissue uptake in conditions like diabetic neuropathy associated with marginal deficiency.^[76] In oncology, TPK1 overexpression in various tumors has prompted exploration of selective inhibitors to disrupt thiamine-dependent metabolism and enhance radiosensitivity, with preclinical studies advancing as of 2024.^[77] TPP deficiency affects up to 80% of individuals with chronic alcoholism, often subclinically, while posing a substantial global health burden in developing regions due to reliance on thiamine-poor staple foods.^[78]

References

[1]
Thiamine Biochemistry - Cornell University
In its diphosphate form (also known as TDP, thiamine pyrophosphate, TPP, or cocarboxylase), it serves as a cofactor for enzymes involved in carbohydrate ...Missing: structure | Show results with:structure
[2]
CHEM 440 - Thiamine pyrophosphate
Dec 3, 2016 · Thiamine pyrophosphate, the full structure of which is shown at right, is analogous to the dithiol derivative of an aldehyde, the thioacetal ...
[3]
The importance of thiamine (vitamin B1) in humans - PMC
Thiamine (thiamin, B1) is a vitamin necessary for proper cell function. It exists in a free form as a thiamine, or as a mono-, di- or triphosphate.Missing: definition | Show results with:definition
[4]
Thiamine Pyrophosphate | C12H18N4O7P2S | CID 5431 - PubChem
Thiamine Pyrophosphate ; Molecular Formula. C12H18N4O7P2S ; Synonyms. 136-09-4; DTXSID101335762; Pyrophosphate, thiamine; 2-(3-((4-amino-2-methyl-pyrimidin-5-yl) ...
[5]
Identification and reconstitution of the yeast mitochondrial ...
The subcellular distribution of enzymes involved in thiamine metabolism shows that ThPP is synthesized in the cytosol and then imported into mitochondria. For ...
[6]
Thiamine Pyrophosphate - an overview | ScienceDirect Topics
Thiamine pyrophosphate is the most active and abundant physiological state of thiamine in the body, responsible for over 80% of total body thiamine. AI ...
[7]
Vitamin B1 | RIKEN
Japanese researcher Umetaro Suzuki, the father of vitamin research in Japan, was the earliest to identify a vitamin with his discovery in 1910 of aberic acid.
[8]
[PDF] The Question of Credit for the Discovery of Thiamine, 1884-1936
He named it “aberic acid.” On December 13, 1910, at 6 o'clock in the evening, Suzuki presented his paper on aberic acid before the Chemical Society ...
[9]
The Vitamin B Complex: A National Historic Chemical Landmark
Dec 2, 2016 · The anti-beriberi factor was the first vitamin to be isolated, confirming the theories of Hopkins and Funk. It was later named vitamin B1 or ...
[10]
Thiamine and selected thiamine antivitamins — biological activity ...
Jan 10, 2018 · Partial dissociation of the endogenous thiamine pyrophosphate in the absence of substrate allows the binding of anti-coenzyme derivative and ...
[11]
Pyruvate oxidation in brain: The active form of vitamin B1 and ... - NIH
Peters R. A. Pyruvate oxidase in brain: Co-carboxylase. Biochem J. 1937 Dec;31(12):2240–2246. doi: 10.1042/bj0312240. [DOI] [PMC free article] [PubMed] ...Missing: pigeon | Show results with:pigeon
[12]
On cocarboxylase. By K. Lohmann and P. Schuster - PubMed
Nutrition classics. Naturwissenschaften, Vol. 25, 1937: On cocarboxylase. By K. Lohmann and P. Schuster. ... Thiamine Pyrophosphate.Missing: structure | Show results with:structure
[13]
Fritz Lipmann – Facts - NobelPrize.org
In 1946 the substance was discovered by Fritz Lipmann, who described its role plays and gave it the name coenzyme A. ... Choose a year you would like to search in
[14]
[PDF] Florian Gabriel - ediss.sub.hamburg
Nov 18, 2024 · In this Dissertation, I present a cryo-EM structure of the human TPK1 at a resolution of 2.1 Å. This work showcases the ability of cryo-EM to ...<|control11|><|separator|>
[15]
68684-55-9 CAS MSDS (Cocarboxylase tetrahydrate) Melting Point ...
Melting point: >170°C (dec.) ; bulk density, 450kg/m3 ; storage temp. Hygroscopic, -20°C Freezer, Under inert atmosphere ; solubility, Water (Slightly) ; form ...Missing: physical | Show results with:physical
[16]
[PDF] Thiamine Pyrophosphate (chloride) - Safety Data Sheet
Aug 7, 2025 · 154-87-0 Thiamine Pyrophosphate (chloride). · Identification number(s) ... Melting point/Melting range: Undetermined. · Boiling point ...
[17]
https://www.rcsb.org/structure/2GDI
[18]
https://www.sigmaaldrich.com/US/en/product/sigma/c8754
[19]
Effect of UV radiation, temperature, acid, and basic solutions on the ...
Aug 6, 2025 · Effect of UV radiation, temperature, acid, and basic solutions on the chemical stability of thiamine ... thiamine pyrophosphate (5). Vitamin B1 ...
[20]
https://cdn.caymanchem.com/cdn/msds/20254m.pdf
[21]
Thiazolium C(2)-proton exchange: structure-reactivity correlations ...
Normal acid behavior for C(α)-proton transfer from a thiazolium lon. Bioorganic ... Function of the aminopyrimidine part in thiamine pyrophosphate enzymes.
[22]
https://www.echemi.com/products/pid_Seven4566-cocarboxylase.html
[23]
Compound: cpd00056 (TPP, 4) - ModelSEED
pKa: 1:4:17.93;1:22:2.22;1:24:7.48;1:26:1.78 ... pyrophosphate; thiamin-PPi; thiamine diphosphate; thiamine pyrophosphate; thiamine-PPi ...Missing: values | Show results with:values
[24]
Separation of phosphoric acid from aqueous solutions of thiamine ...
In a process for the production of cocarboxylase (thiamine pyrophosphate) and/or thiaminemonophosphate by phosphorylation of thiamine with highly concentrated ...
[25]
https://pubs.acs.org/doi/10.1021/bi00414a015
[26]
https://advanced.onlinelibrary.wiley.com/doi/10.1002/adsc.70087
[27]
https://modelseed.org/biochem/compounds/cpd00056
[28]
https://patents.google.com/patent/US5047223A/en
[29]
Substrate transport and drug interaction of human thiamine ...
Dec 30, 2024 · In humans, thiamine transporters SLC19A2 and SLC19A3 primarily regulate cellular uptake of both vitamins. Genetic mutations in these ...
[30]
Folate and thiamine transporters mediated by facilitative carriers ...
SLC19A2 and SLC19A3 transport thiamine but not folates. SLC19A1 and SLC19A2 deliver their substrates to systemic tissues; SLC19A3 mediates intestinal thiamine ...
[31]
The importance of thiamine (vitamin B1) in humans - Portland Press
For transfer across the basal membrane of the enterocyte, T+ is converted into thiamine pyrophosphate (TPP) by thiamine pyrophosphokinase-1 (TPK1) and ...
[32]
Neurological, Psychiatric, and Biochemical Aspects of Thiamine ...
Within the enterocyte, thiamine is phosphorylated to thiamine pyrophosphate (TPP) by TPK1. Then, most TPP is dephosphorylated to thiamine monophosphate (TMP) to ...
[33]
Thiamine Phosphate - an overview | ScienceDirect Topics
Thiamine pyrophosphate (TPP) is the most prevalent physiological form of thiamine in the body, constituting over 80% of total thiamine. It serves as a precursor ...
[34]
Thiamin - Health Professional Fact Sheet
Feb 9, 2023 · The World Health Organization recommends daily oral doses of 10 mg thiamin for a week, followed by 3–5 mg/daily for at least 6 weeks, to treat ...Introduction · Recommended Intakes · Thiamin Deficiency · Thiamin and Health
[35]
A new crystal form of mouse thiamin pyrophosphokinase - PMC
Thiamin pyrophosphokinase (TPK) transfers a pyrophosphate group from ATP to the hydroxyl group of thiamin and produces thiamin pyrophosphate (TPP).Missing: dependent 2025 pyrimidine
[36]
Product inhibition of mammalian thiamine pyrophosphokinase is an ...
Inhibition of TPK1 by ThDP explains why intracellular ThDP levels remain low after administration of even very high doses of thiamine.
[37]
SLC25A19 gene: MedlinePlus Genetics
Nov 1, 2007 · The protein produced from the SLC25A19 gene transports a molecule called thiamine pyrophosphate into the mitochondria, the energy-producing ...
[38]
Entry - *606370 - THIAMINE PYROPHOSPHOKINASE; TPK1 - OMIM
.0005 THIAMINE METABOLISM DYSFUNCTION SYNDROME 5 (EPISODIC ENCEPHALOPATHY TYPE) ... For discussion of the asn219-to-ser (N219S) mutation in the TPK1 gene that was ...
[39]
Thiamine pyrophosphokinase deficiency: report of two Chinese ...
Aug 8, 2023 · Thiamine pyrophosphokinase (TPK) deficiency, is a rare autosomal recessive disorder of congenital metabolic dysfunction caused by variants in the TPK1 gene.
[40]
ON THE ROLE OF THIAMINE PYROPHOSPHATE IN OXIDATIVE ...
ON THE ROLE OF THIAMINE PYROPHOSPHATE IN OXIDATIVE DECARBOXYLATION OF α-KETO ACIDS*, Proc. Natl. Acad. Sci. U.S.A. 47 (6) 753-759, https://doi.org/10.1073/pnas.
[41]
Thiamine Pyrophosphate - an overview | ScienceDirect Topics
Thiamine pyrophosphate (TPP) (37), a derivative of vitamin B1 (38), contains two substituted heterocycles, the pyrimidine and thiazolium rings, connected by a ...Missing: pKa | Show results with:pKa
[42]
Thiamine Responsive Pyruvate Dehydrogenase Complex Deficiency
Any defect in PDHC results in decreased acetyl-CoA synthesis and accumulation of pyruvate and lactate, causing metabolic acidosis. The majority of PDHC ...
[43]
The Two Active Sites in Human Branched-chain α-Keto Acid ...
The above results provide evidence that the two active sites in the E1b heterotetramer operate independently during the ThDP-dependent decarboxylation reaction.
[44]
Structural Insights into the Prereaction State of Pyruvate ...
Pyruvate decarboxylase (PDC) uses thiamine diphosphate as an essential cofactor to catalyze the formation of acetaldehyde on the pathway of ethanol synthesis.
[45]
Radical reactions of thiamin pyrophosphate in 2-oxoacid ...
TPP-dependent reactions form enamine adducts, which can be oxidized to radical intermediates. These radicals are stabilized by the thiazolium ring and are ...
[46]
Thiamine-responsive pyruvate dehydrogenase deficiency in two ...
The human pyruvate dehydrogenase complex (PDHC) catalyzes the thiamine-dependent decarboxylation of pyruvate, and plays an important role in energy metabolism ...
[47]
Thiamine‐responsive pyruvate dehydrogenase complex deficiency ...
Oct 12, 2022 · Although the most severe form of PDHC deficiency leads to death in the neonatal period, a mild form involves mild lactic acidosis, mild ...
[48]
1W85: The crystal structure of pyruvate dehydrogenase E1 bound to ...
Nov 2, 2004 · Thiamine diphosphate (ThDP) is used as a cofactor in many key metabolic enzymes. We present evidence that the ThDPs in the two active sites ...
[49]
Pyruvate dehydrogenase - Proteopedia, life in 3D
Aug 10, 2023 · Thiamine pyrophosphate (TPP) E1 cofactor. In this reaction, the ylide form of TPP attacks the electrophilic carbonyl group of pyruvate. This ...
[50]
Transketolase and vitamin B1 influence on ROS-dependent ...
Aug 15, 2019 · Transketolase (TKT) is a thiamine pyrophosphate (vitamin B1)-dependent enzyme that links the pentose phosphate pathway with the glycolytic pathway.
[51]
Properties and functions of the thiamin diphosphate dependent ...
The transketolase-catalysed reaction is part of the pentose phosphate pathway, where transketolase appears to control the non-oxidative branch of this pathway, ...
[52]
Transketolase: observations in alcohol-related brain damage research
Transketolase is an important enzyme in the non-oxidative branch of the pentose phosphate pathway (PPP), a pathway responsible for generating reducing ...
[53]
Purification, molecular cloning, and expression of 2 ... - PNAS
Its activity proved to depend on Mg2+ and thiamine pyrophosphate, a hitherto unrecognized cofactor of α-oxidation. ... 2-hydroxyphytanoyl-CoA lyase (2-HPCL).
[54]
Acetolactate Synthase - an overview | ScienceDirect Topics
Biosynthesis of valine and leucine begins with the formation of acetolactate from two molecules of pyruvate. Acetolactate synthase (ALS), catalyzing this ...
[55]
(PDF) Umpolung in reactions catalyzed by thiamine pyrophosphate ...
Umpolung in reactions catalyzed by thiamine pyrophosphate ... transketolase, provide clear examples of umpolung in cellular reactions that fulfill different ...
[56]
The Pyruvate Dehydrogenase Complexes: Structure-based Function ...
The pyruvate dehydrogenase complex (PDC) catalyzes the oxidative decarboxylation of pyruvate with the formation of acetyl-CoA, CO2 and NADH (H+) (1–3). The PDC ...
[57]
Assessing the Thiamine Diphosphate Dependent Pyruvate ... - NIH
Nov 16, 2020 · The Thiamine Enzyme Engineering Database (TEED) provides an excellent overview of the nine superfamilies of ThDP-dependent enzymes, including ...
[58]
Biochemical and Structural Insights into a Thiamine Diphosphate ...
Jul 30, 2023 · KGD (EC 4.1.1.71) catalyzes the decarboxylation of α-KG to produce SSA and carbon dioxide, where thiamine diphosphate (ThDP) and divalent ...
[59]
Transketolase - M-CSA Mechanism and Catalytic Site Atlas
TK requires thiamine pyrophosphate and a divalent metal cation as a cofactor. Catalytic activity has been noted with a wide variety of divalent metal ions ...
[60]
Thiamin - PMC - NIH
Mar 10, 2017 · TPP is also a cofactor for the branched-chain α-ketoacid dehydrogenase complex used to convert leucine, isoleucine, and valine into acetyl ...
[61]
https://pmc.ncbi.nlm.nih.gov/articles/PMC10418658/
[62]
Novel insights into transketolase activation by cofactor binding ...
Nov 6, 2019 · Another important product of the PPP is the redox cofactor NADPH, an antioxidant that protects against oxidative damage often caused by reactive ...
[63]
Thiamine pyrophosphate: An essential cofactor for the α-oxidation in ...
The identification of 2-hydroxyphytanoyl-CoA lyase (2-HPCL), a thiamine pyrophosphate (TPP)-dependent peroxisomal enzyme involved in the α-oxidation of phytanic ...
[64]
Mechanism of microbial production of acetoin and 2,3-butanediol ...
Aug 29, 2023 · ... pyruvate in the presence of thiamin pyrophosphate (TPP) [8]. α ... Conversion of pyruvate to Acetoin helps to maintain pH homeostasis ...Missing: thiamine | Show results with:thiamine
[65]
Vitamin B1 (Thiamine) - StatPearls - NCBI Bookshelf - NIH
Jan 31, 2024 · In blood, the thiamine diphosphokinase enzyme converts thiamine into its active form, TPP. TPP plays different roles during distinct steps ...
[66]
Vitamin B1 (Thiamine) Deficiency - StatPearls - NCBI Bookshelf
Etiology ; Diets primarily high in polished rice/processed grains. Chronic alcoholism. Parenteral nutrition without adequate thiamine supplementation.
[67]
Thiamine Pyrophosphokinase Deficiency due to Mutations in the ...
Nov 23, 2020 · TPK deficiency due to TPK1 mutations is a rare neurodegenerative disorder, also known as thiamine metabolism dysfunction syndrome.
[68]
Wernicke-Korsakoff Syndrome - StatPearls - NCBI Bookshelf - NIH
Wernicke-Korsakoff syndrome is a common complication of a thiamine deficiency that is primarily seen with alcoholics. This syndrome was classically ...Continuing Education Activity · Introduction · Etiology · Pathophysiology
[69]
An Overview of Type B Lactic Acidosis Due to Thiamine (B1 ...
In a state of thiamine deficiency, the body reverts to anaerobic metabolism, converting pyruvate to lactate. If glucose is given prior to correcting the ...
[70]
Thiamine deficiency disorders: diagnosis, prevalence, and a ...
Aug 28, 2018 · The functional assessment of thiamine status was developed more than 50 years ago, using the response of the ThDP‐dependent enzyme transketolase ...
[71]
High-dose thiamine strategy in Wernicke–Korsakoff syndrome and ...
Apr 14, 2021 · [3] Thiamine deficiency occurs due to poor intake of vitamin-rich foods, impaired intestinal absorption, decreased storage capacity of liver, ...
[72]
Thiamine and benfotiamine: Focus on their therapeutic potential - PMC
In conclusion, benfotiamine has shown beneficial effects in treatment of various disorders, most notably thiamine deficiency, diabetes, alcoholism and ...Missing: IV | Show results with:IV
[73]
The chromatin landscape of high-grade serous ovarian cancer ...
Sep 28, 2024 · ... TPK1 is a key enzyme facilitating rapid thiamine metabolism. TPK1 has itself been shown to modulate drug and radiosensitivity of cancer ...
[74]
Thiamine deficiency unrelated to alcohol consumption in high ...
Feb 11, 2021 · Thiamine deficiency may have been caused by disease‐related malnutrition, bariatric surgery, chronic use of diuretics, repeated vomiting, lack ...