5-HT1D receptor
The 5-HT1D receptor, also known as 5-hydroxytryptamine receptor 1D and encoded by the HTR1D gene on human chromosome 1p36.12, is a G protein-coupled receptor (GPCR) belonging to the 5-HT1 subclass of serotonin receptors.[1][2] It features a canonical class A GPCR structure with seven transmembrane domains, comprising 377 amino acids in humans, and couples primarily to Gi/o proteins to inhibit adenylyl cyclase activity, thereby reducing intracellular cyclic AMP levels.[1][3] The receptor binds serotonin (5-HT) with high affinity and serves as a presynaptic autoreceptor or heteroreceptor, modulating the release of serotonin and other neurotransmitters in the central nervous system.[1][4] Expression of the 5-HT1D receptor is relatively low compared to other serotonin subtypes and is predominantly localized in discrete brain regions, including the caudate putamen, nucleus accumbens, hippocampus, cortex, dorsal raphe nucleus, and locus coeruleus, with additional presence in the human heart and trigeminal ganglia.[1][4] In the dorsal raphe nucleus, it functions as an autoreceptor to inhibit serotonin release, contributing to the fine-tuning of serotonergic neurotransmission.[1] Peripherally, it is implicated in neurogenic inflammation and nociception within trigeminovascular afferents, where activation leads to inhibition of calcitonin gene-related peptide (CGRP) release.[4] Structurally, the ligand-binding pocket shares limited residue identity (8 out of 22) with other 5-HT1 receptors, influencing agonist selectivity, while lipids such as cholesterol and phosphatidylinositol 4-phosphate modulate its activation and G-protein coupling.[3] Pharmacologically, the 5-HT1D receptor is targeted by triptans such as sumatriptan and naratriptan, which act as agonists to elicit vasoconstriction in cerebral blood vessels and suppress trigeminal nerve activation, making them first-line treatments for acute migraine attacks.[1][5] Selective antagonists like BRL-15572 have been developed for research into receptor function, revealing its role in modulating locomotion, anxiety, and pain pathways.[1][4] In disease contexts, dysregulation of 5-HT1D signaling is associated with migraine pathophysiology, where it helps terminate pain signals via peripheral and central mechanisms, though evidence for direct involvement in depression or other psychiatric disorders remains limited.[5][6] Recent structural studies have advanced understanding of its activation, highlighting conserved transmembrane conformations across 5-HT1 subtypes and potential for designing more selective ligands.[3]Genetics and Structure
Gene Characteristics
The HTR1D gene, encoding the 5-HT1D receptor, is located on the short arm of human chromosome 1 at cytogenetic band 1p36.12, spanning genomic coordinates 23,191,895–23,217,502 (GRCh38.p14).[2] The gene structure features two exons, with the coding region contained within a single exon, rendering the open reading frame intronless; the full genomic span is approximately 25.6 kb, while the coding sequence measures about 1.1 kb (1,134 bp).[7][2] This intronless coding architecture encodes a 377-amino acid polypeptide that forms a G protein-coupled receptor with a calculated molecular weight of 41.9 kDa.[8][9] The HTR1D gene was discovered in 1991 through PCR-based cloning from thyroid cDNA, initially identified as RDC4 among G protein-coupled receptors, and subsequently distinguished from the related HTR1B gene (formerly 5-HT1Dα) via functional expression and pharmacological profiling in 1992.[7] HTR1D exhibits strong evolutionary conservation across mammals, reflecting its fundamental role in serotonergic signaling; for instance, the human protein shares 90% amino acid sequence identity with the mouse ortholog Htr1d.[10]Protein Structure
The 5-HT1D receptor is a class A G-protein-coupled receptor (GPCR) characterized by a canonical seven-transmembrane (7-TM) helical bundle architecture, with an extracellular N-terminal domain, three extracellular loops (ECLs), three intracellular loops (ICLs), and an intracellular C-terminal tail that facilitates interactions with G proteins and other signaling partners.[11] This 7-TM topology spans the plasma membrane, positioning the ligand-binding pocket within the transmembrane region to enable recognition of serotonin and related agonists.[11] Key structural features in the orthosteric binding pocket include conserved residues critical for ligand interactions, such as the aspartate residue at position 3.32 (Asp^{3.32}) in transmembrane helix 3 (TM3), which forms an ionic interaction with the positively charged amine group of serotonin.[11] Cryo-electron microscopy (cryo-EM) structures of the human 5-HT1D receptor in complex with Gi protein and serotonin, resolved at 2.90 Å resolution, reveal an active-state conformation where the ligand occupies a pocket formed by TM3, TM5, TM6, and ECL2, with cholesterol molecules stabilizing the binding site.[12] These structures, along with homology models derived from related 5-HT receptors like 5-HT1B, highlight subtle variations in helix packing that contribute to subtype specificity while maintaining the overall class A GPCR fold.[11] The 5-HT1D receptor exhibits potential for oligomerization, including homodimerization and heterodimerization with the closely related 5-HT1B receptor, as demonstrated by co-immunoprecipitation and co-expression studies in heterologous systems, which suggest functional implications for receptor trafficking and signaling in regions of co-expression.00918-7) Post-translational modifications, particularly N-linked glycosylation at asparagine residues (Asn5, Asn17, and Asn21) in the N-terminal extracellular domain and ECLs, influence receptor maturation, stability, and surface expression.[8]Expression Patterns
Tissue and Regional Distribution
The 5-HT1D receptor exhibits predominantly neuronal expression within the central nervous system (CNS), where overall levels are low relative to other serotonin receptor subtypes such as 5-HT1A or 5-HT2A.[4] Autoradiographic studies using selective radioligands like [³H]alniditan have mapped its distribution primarily to serotonergic projection areas in the human brain. High densities of 5-HT1D receptors are found in the basal ganglia, including the globus pallidus and substantia nigra, as well as in the ventromedial striatum. Moderate expression occurs in various cortical regions. Low levels are observed in the hippocampus, thalamus, hypothalamus, and amygdala, with low but detectable expression in the dorsal raphe nuclei.[13] These patterns align with findings from in situ hybridization, confirming mRNA presence in similar regions.[14] Data from autoradiography and RNA sequencing indicate that 5-HT1D binding sites and mRNA levels are lower than those for the closely related 5-HT1B receptor across human brain tissues.[15][13] In peripheral tissues, 5-HT1D receptor mRNA is detectable in cerebral blood vessels and cranial vasculature of humans and bovines, suggesting a role in vascular modulation.[16] Expression is also noted in trigeminal ganglia, contributing to sensory processing, and in the human heart, where it modulates serotonin release.[17][4] Species differences are evident, particularly in brain vasculature, where 5-HT1D expression is higher in humans than in rodents, potentially influencing pharmacological responses to serotonin agonists.[4][14]Cellular and Subcellular Localization
The 5-HT1D receptor is primarily localized presynaptically on serotonergic neurons, where it functions as an autoreceptor to inhibit serotonin release. This localization has been demonstrated in the raphe nuclei and cortical regions through autoradiographic and immunohistochemical studies in rodent and human brain tissue.[18][1] In addition to its autoreceptor role, the 5-HT1D receptor is expressed on non-serotonergic neurons, serving as a heteroreceptor to modulate the release of other neurotransmitters.[4] The receptor is also localized in vascular smooth muscle cells of cerebral arteries, including human pial arterioles, mediating serotonin-induced vasoconstriction. This distribution supports its role in cranial vascular tone, as evidenced by functional contraction studies and binding assays correlating with brain tissue profiles.[19] At the subcellular level, the 5-HT1D receptor is predominantly enriched in the plasma membranes of axon terminals, with minimal presence in nuclear or cytosolic compartments. Biochemical fractionation of brain homogenates shows enrichment in synaptosomal plasma membrane fractions, consistent with its presynaptic positioning.[20][4] Upon agonist binding, the 5-HT1D receptor undergoes internalization, trafficking to endosomes for subsequent recycling back to the plasma membrane. This dynamic process, observed in cell lines expressing the receptor, helps regulate receptor availability and signaling duration, akin to other G protein-coupled receptors in the serotonin family.Functional Properties
Signal Transduction Pathways
The 5-HT1D receptor, a member of the G protein-coupled receptor superfamily, primarily couples to pertussis toxin-sensitive Gi/o proteins upon activation by serotonin or agonists. This coupling facilitates the exchange of GDP for GTP on the Gαi/o subunit, leading to dissociation of the heterotrimeric G protein into Gαi/o-GTP and Gβγ subunits. The Gαi/o-GTP subunit directly inhibits adenylyl cyclase (AC), reducing the conversion of ATP to cyclic adenosine monophosphate (cAMP) and thereby decreasing intracellular cAMP levels, as observed in transfected cell models and native tissues such as the substantia nigra.[8][21][22] This inhibition can be represented as: receptor activation → Giα-GTP → inhibition of AC → [cAMP]↓. The freed Gβγ subunits contribute to additional signaling by directly interacting with effector proteins, including the opening of G protein inward rectifier potassium (GIRK) channels, which promotes membrane hyperpolarization and neuronal inhibition. Concurrently, Gβγ inhibits voltage-gated calcium channels, particularly N-type channels, reducing calcium influx and neurotransmitter release in presynaptic terminals. These ion channel modulations are pertussis toxin-sensitive and have been demonstrated in recombinant systems expressing human 5-HT1D receptors, as well as in neuronal preparations.[23][24][25] Downstream of cAMP reduction, protein kinase A (PKA) activity decreases due to limited substrate availability, attenuating PKA-mediated phosphorylation events that influence gene expression and cellular excitability. Additionally, 5-HT1D receptor activation modulates mitogen-activated protein kinase (MAPK)/extracellular signal-regulated kinase (ERK) pathways, often through Gβγ or cross-talk with other kinases, promoting ERK phosphorylation in various cell types including glioma cells and potentially contributing to proliferative responses. Beta-arrestin recruitment follows agonist-induced phosphorylation of the receptor by G protein-coupled receptor kinases, leading to desensitization by uncoupling from G proteins and facilitating clathrin-mediated internalization for trafficking and signal termination, a process conserved across serotonin Gi/o-coupled receptors.[26][21][27][28]Roles in Neurotransmission
The 5-HT1D receptor functions as a presynaptic autoreceptor on serotonergic neurons, inhibiting the release of serotonin (5-HT) from nerve terminals to provide negative feedback regulation within central serotonergic pathways.[29] This inhibitory autoreceptor role has been demonstrated in human neocortical synaptosomes, where 5-HT1D receptor activation reduces evoked 5-HT overflow.[30] Similarly, in guinea pig brain tissue, the receptor limits serotonin neurotransmission through presynaptic mechanisms, highlighting its conservation across species.[31] As a heteroreceptor, the 5-HT1D receptor modulates the release of non-serotonergic neurotransmitters in key brain circuits, including the basal ganglia where it is prominently expressed.[4] Activation of 5-HT1D receptors suppresses GABA release from neocortical slices, as evidenced by the depressive effect of the agonist sumatriptan on evoked [3H]GABA overflow, which is blocked by 5-HT1 antagonists.[32] It also inhibits glutamate release in human cerebral cortex, with 5-HT reducing K+-evoked [3H]D-aspartate efflux via 5-HT1B/1D mechanisms.[33] In cerebellar preparations, presynaptic 5-HT1D receptors directly attenuate glutamate release from parallel and mossy fiber terminals, thereby dampening excitatory transmission.[34] These heteroreceptor actions contribute to fine-tuning synaptic activity in regions like the basal ganglia, though specific modulation of dopamine release via 5-HT1D remains less characterized compared to related subtypes.[35] In the cerebrovascular system, activation of 5-HT1B/1D receptors, with 5-HT1B playing the primary role, mediates vasoconstriction of cerebral arteries, which reduces blood flow and is implicated in counteracting vasodilation during migraine pathophysiology.[36][37] Triptans, which are dual 5-HT1B/1D agonists, elicit this constrictive response in large cranial vessels, as shown by reduced vessel diameter in preclinical models of human cerebral arteries.[38] This vascular regulation integrates with the receptor's G_i/o-coupled signaling to inhibit adenylyl cyclase and modulate calcium-dependent processes in smooth muscle cells.[39] The 5-HT1D receptor influences locomotion and anxiety modulation through projections involving the basal ganglia and hypothalamus.[40] In basal ganglia circuits, its expression supports regulatory roles in motor output, with disruptions linked to altered locomotor patterns.[4] For anxiety, receptor activity contributes to behavioral tone, as inferred from its distribution in limbic-related areas.[40] Studies on Htr1d knockout (Htr1d-/-) mice reveal phenotypes consistent with dysregulated serotonergic transmission, including increased 5-HT release due to loss of autoreceptor inhibition.[31] These mice exhibit altered anxiety-like behaviors, such as modified exploratory activity in open-field tests, reflecting the receptor's role in emotional processing.[40] Data from 2017 analyses in genetic models further support enhanced serotonergic tone and behavioral shifts in anxiety paradigms.[41]Pharmacological Profile
Ligand Binding Sites
The orthosteric binding pocket of the 5-HT1D receptor is located within the transmembrane bundle, primarily involving transmembrane helices TM3, TM5, TM6, and the extracellular loop 2 (ECL2). This pocket accommodates endogenous ligands such as serotonin, forming a conserved architecture typical of class A G protein-coupled receptors (GPCRs). Structural analysis of the 5-HT1D-Gi complex reveals that the ligand is embedded deeply in this region, with ECL2 contributing to the pocket's roof and influencing ligand access.[12] Key interactions within the orthosteric site include hydrogen bonding, notably with Ser^{5.42} on TM5, which stabilizes the ligand's amine group, and involvement of Trp^{6.48} on TM6 as a critical toggle switch residue that undergoes rotameric changes during activation. Hydrophobic contacts occur in the binding crevice, mediated by an aromatic cage formed by residues such as Phe^{6.51} and Phe^{6.52} on TM6, along with contributions from TM3 and TM5 side chains, enhancing ligand recognition and specificity. These interactions are highly conserved across serotonin receptors, including the closely related 5-HT1B subtype.[42][43] Allosteric modulation of the 5-HT1D receptor may occur at intracellular sites, where sodium ions bind to a conserved pocket involving Asp^{2.50} on TM2, stabilizing the inactive conformation and potentially allosterically regulating ligand efficacy. Lipid interactions also play a role, with cholesterol molecules surrounding the TM domain and shaping the orthosteric pocket, while phosphatidylinositol 4-phosphate at intracellular interfaces may influence receptor activity.[44][12] The binding affinity of serotonin to the 5-HT1D receptor is high, with a dissociation constant (K_d) of approximately 5 nM in human brain cortex membranes. Structure-activity relationships (SAR) for indoleamine ligands, such as serotonin derivatives, emphasize the importance of the indole ring for hydrophobic packing and the ethylamine side chain for ionic interactions with Asp^{3.32} on TM3, guiding selectivity within the 5-HT1 family.[45] Recent computational modeling, including molecular docking studies using the 2021 cryo-EM structure (PDB: 7E32), predicts agonist-induced conformational shifts in the 5-HT1D receptor, transitioning from inactive to active states via outward movement of TM6 and reorientation of Trp^{6.48}. These models, validated with up to 1 μs molecular dynamics simulations, highlight subtype-specific pocket geometries that influence ligand binding and G_i coupling.[46]Agonists
The endogenous agonist of the 5-HT1D receptor is 5-hydroxytryptamine (serotonin), which exhibits high-affinity binding (pKi = 7.6, equivalent to Ki ≈ 25 nM at the human receptor) and activates G protein-coupled signaling with an EC50 in the low nanomolar range, typically around 10-20 nM depending on the assay system.[47][1] Synthetic agonists of the 5-HT1D receptor include the triptan class of compounds, which are indole-based derivatives primarily developed for antimigraine therapy. Sumatriptan, a prototypical triptan, acts as a non-selective agonist at both 5-HT1B and 5-HT1D receptors, with comparable binding affinities (Ki ≈ 20 nM at human 5-HT1D and Ki ≈ 21 nM at 5-HT1B).[48] Zolmitriptan demonstrates higher selectivity for 5-HT1D over 5-HT1B, binding with Ki = 0.63 nM at human 5-HT1D and Ki = 5.01 nM at human 5-HT1B, while maintaining agonist potency in functional assays (EC50 ≈ 1-5 nM at 5-HT1D).[49][50] More selective 5-HT1D agonists have been developed for research purposes to dissect receptor-specific functions. PNU-109291 is a potent and highly selective agonist with EC50 ≈ 1 nM at 5-HT1D and over 600-fold selectivity versus 5-HT1A and 5-HT2A receptors.[51][52] Similarly, PNU-142633 (a close analog) binds with Ki = 6 nM at human 5-HT1D and shows >3000-fold selectivity over 5-HT1B (Ki >18,000 nM).[53] LY334370, while primarily selective for 5-HT1F (~150-fold preference over 5-HT1D), has been utilized in preclinical studies to probe 5-HT1D activation due to its residual activity at this subtype (Ki ≈ 280 nM at 5-HT1D). LY334370 was discontinued from development due to hepatotoxicity observed in preclinical studies (as of 2001), but its profile informed later 5-HT1F agonists like lasmiditan.[54][55] Structure-activity relationship studies reveal that an indole core, often substituted at the 5-position with heterocyclic or sulfonamide moieties, is crucial for high-affinity binding and agonism at 5-HT1D. For instance, conjugation of oxadiazole heterocycles to the indole enhances potency, and benzyl sulfonamide side chains at the 5-position yield some of the most selective and potent derivatives (pD2 >8 for inhibition of adenylyl cyclase).[56] Selectivity profiles among 5-HT1 subtypes vary by agonist; triptans like zolmitriptan show ~10-fold preference for 5-HT1D over 5-HT1A (Ki ≈ 700 nM at 5-HT1A), while selective agents like PNU-109291 exhibit >100-fold selectivity over 5-HT1A and 5-HT1B. The following table summarizes representative binding affinities (Ki values in nM at human receptors):| Agonist | 5-HT1D | 5-HT1B | 5-HT1A | Selectivity Notes |
|---|---|---|---|---|
| Serotonin | 25 | 15 | 1.3 | Endogenous, low subtype selectivity[1] |
| Sumatriptan | 20 | 21 | 2200 | Non-selective 1B/1D[48] |
| Zolmitriptan | 0.63 | 5.01 | 700 | 8-fold 1D > 1B; 1000-fold 1D > 1A[49] |
| PNU-109291 | ~3 | >1000 | >2000 | >300-fold over 1B/1A[51] |