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Glyceraldehyde 3-phosphate

Glyceraldehyde 3-phosphate (G3P), also known as 3-phosphoglyceraldehyde or triose phosphate, is a three-carbon phosphorylated aldose sugar with the molecular formula C₃H₇O₆P and a molecular weight of 170.06 g/mol.^[1] It consists of a glyceraldehyde backbone where the hydroxyl group at the C-3 position is esterified with a phosphate group, existing primarily in its open-chain aldehyde form in biological contexts, though it can cyclize.^[1] As a key metabolite, G3P plays an essential role as an intermediate in carbohydrate metabolism, linking catabolic and anabolic processes across organisms.^[1] In glycolysis, the primary pathway for glucose breakdown in cells, G3P is generated from the cleavage of fructose 1,6-bisphosphate by aldolase, yielding one molecule of dihydroxyacetone phosphate (which isomerizes to G3P) and one direct G3P per glucose molecule.^[2] It is then oxidized by glyceraldehyde-3-phosphate dehydrogenase (GAPDH) to form 1,3-bisphosphoglycerate, a step that produces NADH and facilitates substrate-level phosphorylation for ATP generation later in the pathway.^[2] This positions G3P at a pivotal point in energy production, with the reaction being reversible and also contributing to gluconeogenesis in certain tissues.^[2] In photosynthetic organisms, G3P is a central product of the Calvin cycle (light-independent reactions), where it is formed by the reduction of 3-phosphoglycerate using ATP and NADPH generated from the light reactions.^[3] For every three CO₂ molecules fixed, six G3P molecules are produced, but only one is exported as net gain to synthesize glucose and other carbohydrates, while the rest regenerate ribulose 1,5-bisphosphate to sustain the cycle.^[4] This role underscores G3P's importance in carbon fixation and the biosynthesis of sugars, starch, and cellulose in plants.^[3] Beyond these core pathways, G3P participates in the pentose phosphate pathway, where it can be interconverted with other sugars for nucleotide synthesis, and in the biosynthesis of amino acids such as tryptophan and vitamins such as thiamine.^[1]^[5] It is also a metabolite in bacteria like Escherichia coli and in mammalian tissues such as kidney and skeletal muscle cytoplasm.^[1]

Structure and Properties

Chemical Structure and Nomenclature

Glyceraldehyde 3-phosphate, commonly abbreviated as G3P or GAP, is a phosphorylated triose sugar with the molecular formula C₃H₇O₆P. Its open-chain structure consists of an aldehyde group at carbon 1, a secondary hydroxyl group at the chiral carbon 2, and a primary phosphate ester at carbon 3, represented as O=CH-CH(OH)-CH₂OPO₃H₂. This configuration positions it as a key aldose intermediate in biochemical pathways, where the phosphate group enhances its solubility and reactivity in cellular environments. The molecule features a single chiral center at carbon 2, resulting in two enantiomers; however, the biologically active form is the D-enantiomer, D-glyceraldehyde 3-phosphate, characterized by the (2R) absolute configuration at C2. This stereospecificity is essential for its recognition by enzymes in metabolic processes, distinguishing it from the L-form, which is not typically utilized in living organisms. The non-phosphorylated parent compound, D-glyceraldehyde, shares the same aldose backbone (OHC-CH(OH)-CH₂OH) but lacks the phosphate modification at C3. In systematic nomenclature, glyceraldehyde 3-phosphate is named (2R)-2-hydroxy-3-(phosphonooxy)propanal according to IUPAC conventions, reflecting its propanal base with hydroxy and phosphonooxy substituents. Alternative names include 2,3-dihydroxypropanal 3-phosphate or D-3-phosphoglyceraldehyde, emphasizing the phosphate's position and the aldehyde functionality. These naming conventions arose during its identification as a metabolic intermediate in the 1930s, amid the pioneering work of Gustav Embden, Otto Meyerhof, and Jakub Karol Parnas on the glycolytic pathway, where it was first isolated and characterized from yeast and muscle extracts.^[6]

Physical and Chemical Properties

Glyceraldehyde 3-phosphate (G3P), with the molecular formula C₃H₇O₆P, has a molecular weight of 170.06 g/mol. The free acid form appears as a colorless to light yellow liquid or syrup, while salt forms such as the barium diethyl acetal or disodium salt are white powders. It exhibits high solubility in water (at least 50 mg/mL at room temperature) but low solubility in most organic solvents like ethanol or acetone.^[7] Spectroscopic characterization reveals characteristic features of its functional groups. In ¹H NMR, the aldehyde proton resonates at approximately 9.7 ppm in D₂O, with the hydroxyl and methylene protons appearing between 3.5–4.5 ppm. Infrared (IR) spectroscopy shows a strong carbonyl stretch for the aldehyde at around 1720 cm⁻¹ and P–O stretching bands for the phosphate group near 1100 cm⁻¹. Ultraviolet (UV) absorbance is minimal, with a weak n→π* transition of the aldehyde around 280 nm (ε ≈ 15 M⁻¹ cm⁻¹), often obscured by impurities in preparations. Chemically, G3P is amphoteric due to its phosphate and aldehyde groups. The phosphate exhibits pKₐ values of approximately 1.4 (first deprotonation) and 6.5 (second deprotonation), rendering it predominantly dianionic at physiological pH.^[8] The aldehyde is enolizable, facilitating tautomerism to the enediol form, but the molecule is unstable in aqueous solution, prone to hydration, dimerization, or polymerization, particularly at neutral to high pH; it is typically stabilized by storage at -20°C or as the diethyl acetal derivative. Reactivity includes reduction of the aldehyde by NaBH₄ to yield glycerol 3-phosphate and oxidation (e.g., by periodate or mild agents) to 3-phosphoglycerate. Commercially, G3P is available primarily as aqueous solutions (8–13 mg/mL for the D-enantiomer) or as the stable barium salt of the diethyl acetal from suppliers like Sigma-Aldrich.^[9] It is synthesized chemically from dihydroxyacetone phosphate via base-catalyzed isomerization or from glycidaldehyde phosphorylation, with the enantiopure D-form being essential for most applications due to its specific optical activity ([α]ᵉ ≈ +12° in water).

Role in Carbohydrate Metabolism

In Glycolysis

In glycolysis, glyceraldehyde 3-phosphate (G3P) is formed during the cleavage of fructose 1,6-bisphosphate by the enzyme fructose-bisphosphate aldolase, which catalyzes the reversible aldol condensation reaction to produce one molecule of G3P and one molecule of dihydroxyacetone phosphate (DHAP)./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) This step, the fourth in the glycolytic pathway, is endergonic under standard conditions, with a standard free energy change (ΔG°') of approximately +23.8 kJ/mol, but it is driven forward by the subsequent rapid consumption of the triose phosphates./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) The DHAP produced alongside G3P is largely converted to G3P via the enzyme triose phosphate isomerase (TPI), which facilitates the interconversion between these two triose phosphates through an enediol intermediate.^[10] At equilibrium, the reaction strongly favors DHAP, with a ratio of approximately 96:4 (DHAP:G3P), corresponding to an equilibrium constant (K_eq) of about 22 for [DHAP]/[G3P].^[10] This isomerization ensures that both triose phosphates from the original glucose molecule can proceed through the payoff phase of glycolysis, effectively doubling the flux to G3P.^[11] As a key substrate in the payoff phase, G3P undergoes oxidation and phosphorylation by glyceraldehyde-3-phosphate dehydrogenase (GAPDH), a NAD+-dependent enzyme that transfers a hydride from the aldehyde group of G3P to NAD+ while incorporating inorganic phosphate (Pi) to form 1,3-bisphosphoglycerate (1,3-BPG).^[12] The reaction is:

\text{G3P} + \text{NAD}^+ + \text{P}_\text{i} \rightleftharpoons \text{1,3-BPG} + \text{NADH} + \text{H}^+

with ΔG°' ≈ +6.3 kJ/mol under standard conditions, making it somewhat endergonic but coupled to the highly exergonic subsequent step.^[13] The high-energy acyl phosphate in 1,3-BPG then donates its phosphate group to ADP via phosphoglycerate kinase, generating ATP and 3-phosphoglycerate, which contributes to the net ATP yield of two molecules per glucose molecule in glycolysis./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) GAPDH serves as a major regulatory point in glycolysis, with its activity modulated by the cytosolic NAD+/NADH ratio, as high NADH levels inhibit the enzyme through product inhibition, slowing flux when redox balance is disrupted.^[14] Additionally, arsenate (AsO₄³⁻) inhibits GAPDH by competitively replacing phosphate, forming an unstable 1-arseno-3-phosphoglycerate intermediate that hydrolyzes spontaneously, uncoupling NADH production from ATP synthesis and disrupting glycolytic energy generation.^[15] The identification of G3P as a critical intermediate in glycolysis was a cornerstone of the pathway's elucidation by Gustav Embden, Otto Meyerhof, and Jakub Karol Parnas in the 1930s, who through isotopic labeling and enzymatic studies outlined the Embden-Meyerhof-Parnas pathway.^[16]

In Gluconeogenesis

In gluconeogenesis, glyceraldehyde 3-phosphate (G3P) serves as a pivotal triose intermediate in the synthesis of glucose from non-carbohydrate precursors, such as lactate, amino acids, or glycerol, primarily in the liver and renal cortex to sustain blood glucose levels during fasting.^[17] The pathway reverses most glycolytic steps but employs bypass enzymes for irreversible reactions, with G3P formation occurring downstream from phosphoenolpyruvate (PEP). Specifically, 3-phosphoglycerate (3-PG), derived from the reversible conversion of 2-phosphoglycerate via phosphoglycerate mutase and enolase, is phosphorylated to 1,3-bisphosphoglycerate (1,3-BPG) by phosphoglycerate kinase, consuming ATP in an endergonic reaction (ΔG°' ≈ +18.8 kJ/mol) that is driven forward by subsequent coupling to exergonic steps./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) This is followed by the reduction of 1,3-BPG to G3P catalyzed by glyceraldehyde-3-phosphate dehydrogenase, utilizing NADH as the electron donor:

\text{1,3-BPG} + \text{NADH} + \text{H}^+ \rightarrow \text{G3P} + \text{NAD}^+ + \text{P}_\text{i}

This reduction step is favorable under physiological conditions (ΔG°' ≈ -6.3 kJ/mol), facilitating the incorporation of reducing equivalents from upstream sources like the malate-aspartate shuttle.^[17]/02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) G3P can also enter gluconeogenesis directly from glycerol, a byproduct of lipid metabolism, providing an alternative substrate during prolonged fasting when fatty acid oxidation increases. Glycerol is first phosphorylated to glycerol 3-phosphate by glycerol kinase, then oxidized to dihydroxyacetone phosphate (DHAP) by cytosolic glycerol-3-phosphate dehydrogenase, with DHAP subsequently isomerized to G3P by triose phosphate isomerase.^[18] This route contributes significantly to hepatic glucose production, accounting for up to 20% of gluconeogenic flux in humans under starvation conditions.^[19] Downstream of G3P, one molecule isomerizes to DHAP via triose phosphate isomerase, and the two trioses condense to form fructose 1,6-bisphosphate (F1,6BP) in a reversible aldolase reaction. Unlike glycolysis, where phosphofructokinase-1 (PFK-1) irreversibly phosphorylates fructose 6-phosphate, gluconeogenesis bypasses this step via fructose-1,6-bisphosphatase (FBPase-1), which hydrolyzes F1,6BP to fructose 6-phosphate and inorganic phosphate, ensuring net flux toward glucose synthesis.^[17] This bypass is critical, as direct reversal of PFK-1 is thermodynamically unfavorable (ΔG°' ≈ -16.3 kJ/mol in the forward glycolytic direction)./02:Unit_II-_Bioenergetics_and_Metabolism/13:Glycolysis_Gluconeogenesis_and_the_Pentose_Phosphate_Pathway/13.01:Glycolysis) The utilization of G3P in gluconeogenesis is tightly regulated to prevent futile cycling with glycolysis, particularly at the FBPase-1 step, which is allosterically inhibited by fructose 2,6-bisphosphate (F2,6BP). Elevated F2,6BP levels, promoted by insulin signaling, activate PFK-1 while inhibiting FBPase-1, thereby suppressing gluconeogenic flux from G3P-derived F1,6BP; conversely, glucagon-induced decreases in F2,6BP (via phosphorylation of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase) relieve this inhibition, enhancing glucose output during fasting.^[20] This reciprocal regulation ensures efficient resource allocation, with gluconeogenesis activated in the liver and kidney to maintain euglycemia, contributing approximately 90% of endogenous glucose production after 12-16 hours of fasting.^[17]

In the Pentose Phosphate Pathway

In the non-oxidative branch of the pentose phosphate pathway (PPP), glyceraldehyde 3-phosphate (G3P) serves as a key intermediate in the reversible interconversion of sugars, facilitating the reshuffling of carbon skeletons from pentose phosphates to glycolytic intermediates such as fructose 6-phosphate (F6P) and additional G3P molecules. This phase enables the net conversion of three molecules of ribose 5-phosphate (R5P) into two F6P and one G3P, providing precursors for nucleotide synthesis or re-entry into glycolysis without net NADPH production. The reactions are catalyzed primarily by transketolase (TKT) and transaldolase (TAL), which transfer two- and three-carbon units, respectively, among sugar phosphates including sedoheptulose 7-phosphate (S7P), erythrose 4-phosphate (E4P), and xylulose 5-phosphate (Xu5P).^[21] The process begins with TKT catalyzing the transfer of a two-carbon glycoaldehyde unit from Xu5P to R5P, yielding G3P and S7P:

\text{Xu5P} + \text{R5P} \rightleftharpoons \text{G3P} + \text{S7P}

Subsequently, TAL transfers a three-carbon dihydroxyacetone unit from S7P to G3P, producing F6P and E4P:

\text{S7P} + \text{G3P} \rightleftharpoons \text{F6P} + \text{E4P}

A second TKT reaction then involves Xu5P and E4P to generate another F6P and G3P:

\text{Xu5P} + \text{E4P} \rightleftharpoons \text{F6P} + \text{G3P}

These reversible steps allow flexible carbon redistribution, distinct from the irreversible oxidative PPP, and support biosynthetic demands by supplying G3P and F6P for further metabolism.^[21] The non-oxidative PPP integrates with the oxidative branch, which generates NADPH for reductive biosynthesis such as fatty acid synthesis, by channeling pentose products back into glycolysis through G3P and F6P; this linkage maintains metabolic balance in proliferating cells where NADPH demand is high. For instance, reduced activity of pyruvate kinase M2 elevates G3P levels, enhancing flux through the non-oxidative branch to bolster NADPH availability indirectly. The pathway's activity is regulated by cellular needs for R5P (for nucleotide production) or NADPH, with upregulation of enzymes like TKT observed in conditions requiring increased biosynthesis.^[21]^[22] Deficiencies in TKT, often exacerbated by thiamine shortage as TKT requires thiamine pyrophosphate as a cofactor, are associated with neurological disorders; specifically, a genetic assembly defect in TKT has been identified in patients with Wernicke-Korsakoff syndrome, rendering cells hypersensitive to thiamine deficiency and impairing PPP function.^[23]

Role in Photosynthesis

Production in the Calvin Cycle

In the reductive phase of the Calvin cycle, which constitutes the primary mechanism for photosynthetic carbon assimilation, ribulose 1,5-bisphosphate (RuBP) serves as the CO₂ acceptor. The enzyme ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) catalyzes the carboxylation of RuBP, yielding two molecules of 3-phosphoglycerate (3-PGA) for each molecule of CO₂ fixed. These 3-PGA molecules are subsequently reduced to glyceraldehyde 3-phosphate (G3P), the first stable triose phosphate product of the cycle, through energy-dependent reactions that consume ATP and NADPH produced by the light-dependent reactions of photosynthesis. This process establishes G3P as the key output for further carbohydrate biosynthesis in autotrophic organisms.^[24]^[25] The reduction of 3-PGA to G3P occurs in two sequential steps. First, phosphoglycerate kinase (PGK) phosphorylates 3-PGA to form 1,3-bisphosphoglycerate (1,3-BPG), utilizing ATP:

\text{3-PGA + ATP} \rightarrow \text{1,3-BPG + [ADP](/page/ADP)}

Next, the chloroplast-specific NADP⁺-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) catalyzes the reduction of 1,3-BPG to G3P, consuming NADPH and releasing inorganic phosphate (Pᵢ):

\text{1,3-BPG + NADPH} \rightarrow \text{G3P + NADP⁺ + Pᵢ}

Thus, two molecules of G3P are generated per CO₂ fixed. The chloroplastic isoform of GAPDH is uniquely light-regulated via thioredoxin-dependent redox activation, which enhances its activity in response to photosynthetic electron flow and ensures coordinated carbon fixation. Additionally, phosphoribulokinase plays a critical role in the regenerative phase by phosphorylating ribulose 5-phosphate to regenerate RuBP, closing the cycle.^[26]^[27] Regarding stoichiometry, the assimilation of three CO₂ molecules in the Calvin cycle produces six G3P molecules, requiring nine ATP and six NADPH overall. Of these, five G3P molecules are recycled through a series of rearrangements to regenerate three RuBP molecules, leaving one net G3P available for export to the cytosol or chloroplast stroma, where it contributes to the synthesis of sucrose and starch. This balanced output supports sustained carbon flux in photosynthetic tissues.^[28] The Calvin cycle represents an ancient metabolic pathway that originated in cyanobacteria more than 2 billion years ago, enabling the evolution of oxygenic photosynthesis; it has been conserved across cyanobacteria, algae, and plants following endosymbiotic events that gave rise to chloroplasts.^[29]

Stoichiometric Balance

In the Calvin cycle, the stoichiometric balance for net production of glyceraldehyde 3-phosphate (G3P) from carbon dioxide fixation accounts for both the reductive synthesis and the regeneration of ribulose 1,5-bisphosphate (RuBP). For every three molecules of CO₂ fixed, six molecules of G3P are initially produced, but five are consumed in the regeneration of three RuBP molecules, yielding one net G3P molecule. The overall reaction is:

$3 \, \ce{CO2} + 9 \, \ce{ATP} + 6 \, \ce{NADPH} + 6 \, \ce{H+} \rightarrow \ce{G3P} + 9 \, \ce{ADP} + 8 \, \ce{P_i} + 6 \, \ce{NADP+} + 3 \, \ce{H2O}

This balance reflects the energy investment required for carbon reduction (six ATP and six NADPH) and RuBP regeneration (three additional ATP). Of the six G3P molecules generated per three CO₂ fixed, only one-sixth (one molecule) is exported from the chloroplast stroma for biosynthetic purposes, representing the net incorporation of all three fixed carbon atoms as a triose phosphate equivalent. This exported G3P serves as a precursor for carbohydrate synthesis: it is converted to fructose 6-phosphate and glucose 1-phosphate en route to sucrose in the cytosol, or directed toward ADP-glucose for starch accumulation within the chloroplast. Such partitioning ensures efficient allocation of photosynthetic products to meet plant demands for transportable sugars or storage polymers.^[30] The efficiency of G3P production is constrained by the quantum requirement of photosynthesis, which demands 8–10 photons per CO₂ molecule fixed under optimal conditions, corresponding to the minimal energy for generating the necessary ATP and NADPH via the light reactions. However, photorespiration in C₃ plants significantly diminishes this efficiency, reducing net G3P yield by 25–50% through competitive oxygenation of RuBP by Rubisco, which diverts carbon and energy without productive output. In contrast, C₄ and CAM pathways mitigate these losses by concentrating CO₂ at the site of Rubisco, thereby enhancing G3P flux and overall photosynthetic productivity; for instance, the net conversion to biomass equivalents scales to six CO₂ yielding one glucose molecule (two G3P units).^[31] Environmental factors further modulate this stoichiometric balance, as rising temperatures decrease Rubisco's specificity for CO₂ over O₂, elevating photorespiration and reducing G3P production rates, while elevated atmospheric CO₂ levels favor carboxylation and improve carbon flux through the cycle. These dynamics underscore the cycle's sensitivity to climatic conditions, influencing the net efficiency of G3P utilization in sustaining plant growth.^[32]

Biosynthetic Roles

In Tryptophan Biosynthesis

Glyceraldehyde 3-phosphate (G3P) plays a crucial role in tryptophan biosynthesis by serving as a key intermediate that supplies erythrose 4-phosphate (E4P) via the non-oxidative branch of the pentose phosphate pathway, thereby providing essential carbon units for entry into the shikimate pathway.^[21] In this pathway, E4P condenses with phosphoenolpyruvate (PEP) in the first committed step, catalyzed by 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, to produce 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP). This Mg²⁺-dependent reaction is thermodynamically favorable, with a negative standard free energy change under physiological conditions.^[33] The key reaction equation is:

\text{PEP} + \text{E4P} \rightleftharpoons \text{DAHP} + P_i

DAHP is then transformed through a series of enzymatic steps into shikimate and subsequently chorismate, the branch point for aromatic amino acid synthesis. From chorismate, the tryptophan-specific branch proceeds via anthranilate synthase, which converts chorismate to anthranilate using glutamine as the amino donor, followed by reactions forming N-(5'-phosphoribosyl)anthranilate and ultimately indole-3-glycerol phosphate, which is converted to tryptophan by tryptophan synthase.^[34] In the final step, tryptophan synthase also releases G3P as a byproduct from the cleavage of indole-3-glycerol phosphate.^[35] Tryptophan biosynthesis is subject to feedback regulation, primarily through allosteric inhibition of anthranilate synthase by tryptophan, which prevents unnecessary accumulation of intermediates.^[36] This pathway is indispensable in bacteria, fungi, and plants for de novo synthesis of tryptophan, linking carbohydrate metabolism to aromatic amino acid production; in contrast, animals cannot synthesize it and must acquire it through dietary sources. In bacteria such as Escherichia coli, the enzymes of the tryptophan biosynthetic pathway are coordinately regulated by the trp operon, a classic example of transcriptional attenuation and repression that responds to tryptophan levels and ensures balanced G3P flux from central metabolism into aromatic compound formation.^[37]

In Thiamine Biosynthesis

Glyceraldehyde 3-phosphate (G3P) serves as an essential precursor in thiamine biosynthesis, providing a C3 unit that contributes to the carbon skeleton of the thiazole moiety of the vitamin. In bacteria and plants, G3P condenses with pyruvate in the first committed step of the pathway, catalyzed by 1-deoxy-D-xylulose 5-phosphate synthase (Dxs), to form the key intermediate 1-deoxy-D-xylulose 5-phosphate (DXP). This reaction requires thiamine pyrophosphate (TPP) as a cofactor and proceeds via a mechanism involving decarboxylation of pyruvate and aldol condensation. The overall equation for this step is:

\text{pyruvate} + \text{G3P} \rightarrow \text{DXP} + \text{CO}_2

^[38] The DXP intermediate is then incorporated into the thiazole ring through a series of enzymatic transformations. In organisms such as Escherichia coli, DXP is converted by thiazole synthase (ThiG) in conjunction with the sulfur carrier protein ThiS and dehydroglycine (derived from cysteine) to form 4-methyl-5-β-hydroxyethylthiazole monophosphate (Thz-P).^[39] The carbons from G3P specifically contribute to positions C4' and C5' of the thiazole ring in the final thiamine structure. This branch of the pathway highlights the intricate rearrangement facilitated by radical mechanisms in some species. The thiazole moiety (Thz-P) is subsequently assembled with the pyrimidine moiety, 4-amino-2-methyl-5-hydroxymethylpyrimidine diphosphate (HMP-PP), by thiamine monophosphate synthase (ThiE) to produce thiamine monophosphate (TMP). TMP is then phosphorylated by thiamine-phosphate kinase (ThiL) to yield TPP, the biologically active form that serves as a cofactor in numerous metabolic reactions. Thiamine biosynthesis occurs de novo in bacteria, plants, and fungi, but vertebrates, including humans, lack the necessary enzymes and must obtain thiamine from dietary sources, rendering it an essential vitamin. The pathway is tightly regulated by TPP-mediated feedback inhibition on key enzymes like Dxs and through riboswitch mechanisms that control gene expression in response to intracellular thiamine levels. Thiamine deficiency impairs TPP-dependent enzymes, such as pyruvate dehydrogenase, leading to accumulation of pyruvate and lactate, which manifests clinically as beriberi—a condition characterized by neurological, cardiovascular, and muscular symptoms. In severe cases, this disruption affects energy metabolism in high-demand tissues like the brain and heart, underscoring the critical link between G3P-derived thiamine and carbohydrate catabolism.

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Triose phosphate
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[30]
Metabolism of the Three Proteogenic Aromatic Amino Acids and ...
Tryptophan synthase A (or α-subunit) cleaves indole glycerol-3-phosphate into indole and glyceraldehyde-3-phosphate, while tryptophan synthase B (or β-subunit) ...
[31]
Tryptophan synthase: a mine for enzymologists - PMC - NIH
The physiological reaction of TS is the conversion of indole-3-glycerol phosphate (IGP) and l-serine to l-tryptophan and d-glyceraldehyde-3-phosphate (G3P).
[32]
L-Tryptophan: Basic Metabolic Functions, Behavioral Research and ...
Mar 23, 2009 · This review provides a brief overview of the role of L-tryptophan in protein synthesis and a number of other metabolic functions. With emphasis ...
[33]
Evolution of tryptophan biosynthetic pathway in microbial genomes
Tryptophan biosynthetic pathway has five chemical reaction steps that are highly conserved in diverse microbial genomes.