Fact-checked by Grok 2 weeks ago

Semisynthesis

Semisynthesis, also known as partial chemical synthesis, is a method in organic chemistry that involves isolating a compound from natural sources—such as plants, microbes, or animals—and chemically modifying it to create a new molecule with targeted structural or functional changes.^[1] This approach leverages the inherent complexity and stereochemistry of natural products as starting materials, making it more efficient than total synthesis for producing complex biomolecules when de novo construction from simple precursors is challenging, costly, or low-yielding.^[2] In the pharmaceutical industry, semisynthesis has been essential for drug development, allowing modifications that enhance bioavailability, reduce toxicity, overcome resistance, and improve therapeutic selectivity while retaining the core scaffold of bioactive natural products.^[3] It bridges natural product isolation with synthetic innovation, addressing limitations like scarce supply or suboptimal properties of lead compounds from nature.^[4] Historically, early examples include the 19th-century conversion of morphine to codeine and heroin, but modern applications dominate in oncology, infectious diseases, and analgesics.^[5] Prominent examples illustrate its impact: the semisynthesis of the anticancer drug paclitaxel (Taxol) from 10-deacetylbaccatin III, a yew tree-derived precursor, via side-chain attachment, enabling scalable production for treating breast, ovarian, and lung cancers.^[6] In antibiotics, natural penicillin G is modified to semisynthetic beta-lactams like amoxicillin and cephalosporins, expanding antibacterial spectra and stability.^[7] Similarly, semisynthesis of artemisinin derivatives from engineered microbial artemisinic acid has transformed antimalarial therapy by improving solubility and half-life.^[8] Recent advances, including C-H bond activation and chemoenzymatic techniques, continue to broaden semisynthesis for terpenoids, steroids, and proteins, fostering sustainable drug discovery.^[4]

Overview

Definition

Semisynthesis, also known as partial chemical synthesis, is a type of chemical synthesis in organic chemistry that employs compounds isolated from natural sources—such as plants, microbes, or animals—as starting materials, which are then modified through targeted chemical reactions to yield new molecules with enhanced or specific properties.^[9] This method capitalizes on the structural complexity inherent in these natural precursors, enabling the efficient production of complex compounds that would be challenging or uneconomical to assemble entirely from basic building blocks.^[10] Unlike total synthesis, which constructs the target molecule de novo from simple, commercially available precursors via a complete sequence of chemical steps, semisynthesis begins with advanced natural intermediates, thereby requiring fewer reactions and often improving yield and scalability.^[10] For instance, in pharmaceutical development, semisynthesis allows for the derivatization of naturally occurring scaffolds to optimize bioactivity or solubility.^[11] Semisynthesis further differs from bioconversion, a process that transforms organic substrates into products primarily through biological means, such as enzymatic catalysis or microbial metabolism, without substantial chemical synthesis interventions.^[12] The term "partial chemical synthesis" underscores its roots in organic chemistry, where it describes the hybrid approach of retaining a significant portion of the natural molecule while applying selective chemical alterations to achieve the final structure.^[9]

Core Principles

Semisynthesis fundamentally relies on the strategic use of naturally occurring precursors as starting materials to construct complex molecules, thereby circumventing the formidable challenges and high costs associated with total chemical synthesis. This approach is particularly advantageous for intricate natural products such as alkaloids and polyketides, which often feature densely functionalized structures that are difficult and inefficient to assemble de novo from simple building blocks. By extracting and utilizing abundant natural scaffolds, semisynthesis leverages evolutionary optimization inherent in these precursors, reducing synthetic steps and improving overall yield while maintaining molecular complexity.^[13]^[14] A central tenet of semisynthesis is the application of structure-activity relationship (SAR) studies to inform targeted chemical modifications that enhance desirable pharmacological properties. SAR analysis identifies key functional groups or stereocenters responsible for biological activity, allowing chemists to introduce subtle alterations—such as esterification or halogenation—that improve bioavailability, metabolic stability, or target specificity without disrupting the core scaffold. This principle ensures that semisynthetic derivatives retain the therapeutic potential of the parent compound while overcoming limitations like poor solubility or off-target effects, as demonstrated in the optimization of alkaloid-based analgesics.^[15]^[14] The guiding philosophy of semisynthesis emphasizes minimal structural perturbations to preserve the natural bioactivity of the precursor while mitigating inherent drawbacks such as toxicity or suboptimal pharmacokinetics. These conservative modifications, often limited to peripheral functional groups, exploit the pharmacophore's robustness, enabling the development of safer and more efficacious analogues; for instance, polyketide derivatives have been refined to reduce cytotoxicity through selective side-chain adjustments. This balance between preservation and improvement underscores semisynthesis's efficiency in bridging natural product discovery with practical drug development.^[13]^[15]

History

Early Developments

The origins of semisynthesis trace back to the late 19th century, when organic chemists began systematically modifying natural products to elucidate their structures and create new compounds with potentially useful properties. A pivotal figure in this development was Emil Fischer, who in 1898 advanced the field through his work on purines and sugar derivatives. Building on his earlier synthesis of glucose and related sugars from glycerol in 1890, Fischer modified natural sugars like glucose to produce derivatives such as osazones and glucosides, enabling the determination of their stereochemistry and configurations. These efforts represented one of the first notable applications of semisynthetic approaches to natural carbohydrates, laying foundational principles for structural analysis in organic chemistry.^[16] In the pharmaceutical realm, semisynthesis gained practical importance in the early 20th century with modifications of opium alkaloids to improve therapeutic efficacy and reduce side effects. A landmark example was the conversion of morphine, isolated from opium in 1804, to codeine through methylation of its phenolic hydroxyl group. Although codeine occurs naturally in low yields, chemical production from morphine became commercially viable in the 1910s, providing a milder analgesic for pain relief with less respiratory depression than morphine. This semisynthetic process, involving reagents like dimethyl sulfate, exemplified how targeted chemical alterations could enhance the utility of natural alkaloids for medical use.^[17] The acceleration of semisynthetic research was markedly influenced by the exigencies of World War II, particularly in the domain of antibiotics. During World War II, the urgent need for effective treatments against bacterial infections amid penicillin shortages spurred research that laid the groundwork for later chemical alterations of the natural penicillin molecule, with major semisynthetic modifications beginning in the 1950s following the isolation of 6-aminopenicillanic acid (6-APA) in 1957. Researchers at institutions like Oxford and U.S. pharmaceutical companies explored modifications to the penicillin nucleus to improve stability, solubility, and resistance profiles, marking the transition from crude natural extracts to engineered variants. These wartime efforts, supported by government funding, established semisynthesis as a critical strategy for scaling antibiotic production and addressing clinical limitations.^[18]

Modern Advancements

During the 1950s and 1970s, semisynthesis expanded significantly in the fields of antibiotics and steroids, leveraging natural precursors for scalable chemical modifications. For antibiotics, the focus shifted to cephalosporins derived from fungal sources, with 7-aminocephalosporanic acid (7-ACA) isolated in 1959 from cephalosporin C produced by the fungus Cephalosporium acremonium. This breakthrough, achieved through acid hydrolysis at the University of Oxford, enabled the development of semisynthetic derivatives; Eli Lilly refined production methods in the 1960s, leading to clinical introductions like cephalothin in 1964 and cefaloridine shortly thereafter. These modifications improved spectrum and stability, addressing limitations of natural cephalosporin C. In parallel, steroid semisynthesis advanced corticosteroid therapies; by 1952, semisynthetic routes to cortisone from plant sterols proved viable, paving the way for oral and intra-articular formulations of hydrocortisone.^[19] Between 1954 and 1958, six semisynthetic corticosteroids, such as prednisolone, entered systemic use for anti-inflammatory applications, reducing reliance on animal-derived precursors and enhancing therapeutic efficacy.^[19] From the 1980s onward, recombinant DNA technology and metabolic engineering integrated into semisynthesis workflows, enabling efficient microbial production of precursors that were previously challenging to obtain at scale. Recombinant techniques, including gene cloning and pathway overexpression in hosts like Escherichia coli and Penicillium chrysogenum, optimized biosynthetic fluxes for intermediates such as deacetoxycephalosporin C (DAOC), a key precursor for semisynthetic cephalosporins, yielding up to 2.5 g/L.^[20] A landmark application occurred in the 1990s with taxol (paclitaxel) semisynthesis, where plant cell cultures of Taxus species produced the precursor 10-deacetylbaccatin III through elicited suspension cultures, allowing chemical conversion to the anticancer drug and circumventing unsustainable yew bark harvesting. This approach, commercialized by companies like Phyton, combined biotechnological precursor generation with targeted synthesis, achieving gram-scale outputs. Further examples include engineered Saccharomyces cerevisiae strains producing artemisinic acid at 2.5 g/L as a precursor for semisynthetic artemisinin derivatives in antimalarials.^[20] Post-2000 trends have emphasized directed evolution of enzymes for precise, regioselective modifications and CRISPR-enabled microbial factories for high-throughput precursor synthesis, enhancing the precision and sustainability of semisynthesis. Directed evolution, involving iterative mutagenesis and screening, has engineered enzymes like cytochrome P450 monooxygenases to perform stereoselective oxidations on complex scaffolds, as in the evolution of variants with expanded substrate ranges for pharmaceutical intermediates via combinatorial active-site saturation testing.^[21]^[22] This method, recognized in the 2018 Nobel Prize in Chemistry, has improved enzyme stability in organic solvents, facilitating semisynthetic steps for drugs like statins. CRISPR-Cas9 systems have accelerated microbial engineering by enabling multiplexed edits; for instance, in S. cerevisiae, CRISPR-mediated integration of multi-gene pathways has boosted artemisinic acid production for semisynthetic antimalarials, while in E. coli, it has optimized shikimate pathways yielding 15.6 g/L of precursors like 5-methylpyrazine-2-carboxylic acid.^[23] These tools have reduced development timelines from years to months, supporting scalable semisynthesis in biotechnology. In the 2010s, semisynthetic approaches contributed to drugs like ingenol mebutate, derived from plant extracts for actinic keratosis treatment (approved 2012), highlighting ongoing integration of natural precursors with advanced chemistry as of 2025.^[23]^[24]

Methods

Extraction and Isolation

Natural precursors for semisynthesis are primarily sourced from biological materials including plants, microorganisms, animals, and fungi, where complex secondary metabolites serve as starting points for chemical modifications. In plants, alkaloids such as morphine and codeine are extracted from opium poppy (Papaver somniferum), involving processes like ultrasonic-assisted extraction from dried plant powder to isolate these compounds efficiently. Microbes, particularly actinomycetes, provide polyketides like those in the erythromycin family, isolated through serial dilution plating on selective media followed by solvent extraction from fermented cultures. Animal-derived sources include steroids from bile acids, obtained via solvent extraction from mammalian bile to yield precursors like cholic acid for hormonal semisyntheses. Fungal sources contribute metabolites such as verticillins, extracted using ethyl acetate from cultured strains like those from deep-sea fungi for subsequent derivatization. Extraction techniques for these precursors typically employ solvent-based methods to disrupt cellular matrices and solubilize target compounds, with Soxhlet extraction being a classical approach that enables continuous reflux and percolation of organic solvents like ethanol or dichloromethane through plant or microbial biomass for exhaustive recovery. Isolation often follows with chromatographic techniques, including column chromatography or high-performance liquid chromatography (HPLC), to separate the desired precursors from co-extracted impurities based on differences in polarity and molecular size. Yield optimization remains challenging due to factors like seasonal variability in plant metabolite content, which can fluctuate with environmental conditions such as temperature and rainfall, necessitating standardized harvesting protocols to maintain consistent precursor availability. Purification of isolated precursors is critical to achieve high purity levels, typically exceeding 95%, to prevent contaminants from interfering with downstream semisynthetic reactions and ensure product efficacy. This process commonly involves repeated chromatographic purification steps combined with spectroscopic confirmation using nuclear magnetic resonance (NMR) for structural verification and mass spectrometry (MS) for molecular weight and purity assessment via quantitative 1H NMR (qHNMR) methods that account for all detectable species.

Chemical Modification

Chemical modification in semisynthesis involves the targeted alteration of isolated natural product precursors through synthetic organic chemistry to introduce desired structural features, enhancing properties such as potency, stability, or selectivity. Common reactions include functional group interconversions, such as converting lactones to amides, exemplified by the modification of patupilone to ixabepilone.^[25] Esterification and amidation are frequently employed; for instance, esterification of the hydroxyl group in dihydroartemisinin yields artesunate, which exhibits superior water solubility compared to the parent compound.^[25] Selective protections and deprotections are essential to mask reactive sites during multi-step processes, while stereoselective modifications preserve or adjust chirality, such as the removal of specific chiral centers in the conversion of lovastatin to simvastatin to simplify synthesis without compromising activity.^[25] These modifications rely on specialized tools and reaction conditions to achieve high efficiency and specificity. Catalysts like palladium facilitate cross-coupling reactions for C-C bond formation, as utilized in the synthesis of ixabepilone where palladium-mediated opening of the lactone ring enables side-chain installation.^[25] Reagents for side-chain additions, such as amino-phosphonic acid derivatives, are applied in telavancin to enhance antibacterial activity against resistant strains.^[25] Reaction optimization, often involving solvent selection, temperature control, and purification techniques, typically delivers per-step yields of 70-90%, as demonstrated in copper-catalyzed azide-alkyne cycloadditions during erythromycin scaffold modifications. Such conditions ensure scalability, with late-stage diversification strategies employing transition metal catalysts like rhodium for stereoselective C-H amination on scaffolds such as (+)-sclareolide, achieving 60-83% yields in key steps.^[26] Strategies for increasing molecular complexity build upon the rigid natural scaffolds by appending pharmacophores through concise multi-step sequences, generally limited to 5-10 transformations to balance efficiency and overall yield. These approaches often leverage structure-activity relationship (SAR) principles to guide modifications that optimize biological interactions.^[25] A representative example is the semisynthesis of paclitaxel from 10-deacetylbaccatin III, involving four steps: regioselective protection of the C-7 hydroxyl, esterification at C-13 with the phenylisoserine side chain, deprotection, and acetylation at C-10, affording the anticancer agent in high purity and yields exceeding 70% per step. Similarly, semisynthetic modifications of vancomycin derivatives employ 5-7 step sequences incorporating thiocarbonylation, deoxygenation, and lipidation to generate analogs with improved pharmacokinetics.^[26]

Biological and Engineered Pathways

Biological pathways in semisynthesis leverage enzymes, particularly cytochrome P450 monooxygenases (P450s), to introduce regioselective modifications to natural substrates isolated from plants or microbes, offering high specificity and milder reaction conditions than traditional chemical synthesis. These heme-containing enzymes catalyze oxidative transformations such as hydroxylation, epoxidation, and demethylation, which diversify natural product scaffolds while preserving stereochemistry. For example, in flavonoid biosynthesis, CYP75A and CYP75B perform 3'- and 5'-hydroxylations on naringenin to produce cyanidin precursors, enabling precise functionalization at aromatic rings.^[27] Similarly, CYP82D and CYP706X hydroxylate apigenin at the C6 and C8 positions to yield scutellarein in species like Scutellaria baicalensis, demonstrating P450s' role in tailoring bioactive metabolites for enhanced pharmacological properties.^[27] In alkaloid pathways, P450s such as CYP82P2 facilitate 10-hydroxylation of dihydrobenzophenanthridine intermediates in California poppy, contributing to the structural complexity of antimicrobial compounds.^[28] These biocatalytic steps integrate seamlessly with extraction processes, allowing semisynthetic routes that mimic or extend native metabolism. Engineered pathways advance semisynthesis through metabolic engineering and synthetic biology, refactoring heterologous genes into microbial hosts like Escherichia coli to produce or modify precursors de novo, often bypassing the need for complex isolations from source organisms. Since the early 2000s, this approach has targeted plant-derived pathways, with tools like promoter optimization, codon harmonization, and pathway modularization enhancing enzyme efficiency and metabolic flux. A seminal application is the microbial production of artemisinin precursors, where E. coli is engineered with genes from Artemisia annua, including amorphadiene synthase and P450 oxidases, to generate artemisinic acid—an intermediate converted chemically to the antimalarial drug artemisinin.^[29] In one engineered system, substrate-promiscuous variants of the bacterial P450 BM3 (CYP102A1) were introduced into E. coli harboring the mevalonate pathway, enabling selective epoxidation of amorphadiene to artemisinic-11S,12-epoxide at titers of 250 mg/L in shake-flask cultures.^[29] Further refactoring, including compartmentalization and fed-batch fermentation, has scaled production of the upstream precursor amorpha-4,11-diene to 27 g/L, illustrating how synthetic biology refines multi-enzyme cascades for industrial viability.^[30] Compared to traditional biological pathways, which depend on native organisms or purified enzymes with inherent limitations in scalability and substrate range, engineered pathways enable tunable, high-density production in optimized hosts, drastically reducing reliance on ecologically sensitive wild sources. Native plant extraction for artemisinin yields only 0.01–0.8% dry weight, whereas engineered E. coli achieves over 25-fold higher productivity for precursors like artemisinic acid (up to 2.5 g/L in early strains, with subsequent optimizations exceeding 10 g/L), facilitating sustainable semisynthesis.^[31] This shift not only amplifies yields but also allows customization of modifications, such as altering P450 regioselectivity via directed evolution, to generate novel semisynthetic analogs with improved bioavailability.

Applications

In Pharmaceuticals

Semisynthesis plays a pivotal role in pharmaceuticals by optimizing natural product leads into viable therapeutic agents, particularly through structural modifications that enhance ADME (absorption, distribution, metabolism, and excretion) properties and mitigate side effects. For instance, in the development of beta-lactam antibiotics, semisynthetic derivatives of penicillin and cephalosporin scaffolds have been engineered to improve oral bioavailability and reduce hypersensitivity reactions; amoxicillin, a semisynthetic penicillin, exhibits superior gastrointestinal absorption compared to its natural precursor, allowing for effective oral dosing while minimizing allergic risks. Similarly, third-generation cephalosporins like ceftriaxone incorporate modifications at the C-7 position to boost beta-lactamase stability and extend half-life, thereby enhancing tissue penetration and reducing dosing frequency without increasing toxicity. These optimizations address inherent limitations of natural beta-lactams, such as poor stability in acidic environments or narrow therapeutic windows, enabling broader clinical utility against resistant pathogens.^[32]^[33] Regulatory approval of semisynthetic drugs by the U.S. Food and Drug Administration (FDA) underscores their importance. The FDA's guidance on stereoisomeric drugs mandates rigorous control of stereochemistry during semisynthesis to ensure consistent pharmacological activity and safety, requiring stereospecific assays for identity, purity, and enantiomeric composition in both drug substances and products; this is critical for beta-lactams, where chiral modifications can influence binding affinity to penicillin-binding proteins and beta-lactamases. Failure to maintain stereochemical purity could lead to variable efficacy or increased adverse events, prompting early pharmacokinetic studies of individual enantiomers during development. Such regulatory frameworks facilitate the approval of semisynthetics like piperacillin, which combines enhanced spectrum with controlled stereochemistry for combination therapies.^[34] Economically, semisynthesis offers substantial cost savings over total synthesis, making complex natural product derivatives accessible for large-scale production. A prime example is paclitaxel (Taxol), where semisynthetic routes from precursors like 10-deacetylbaccatin III achieve production costs of approximately $20–100 per gram, in contrast to total synthesis approaches exceeding $10,000 per gram due to their multi-step complexity and low yields. This efficiency has enabled paclitaxel's widespread use in oncology, reducing overall treatment expenses while maintaining high purity and scalability. Semisynthesis thus not only accelerates drug development but also supports economic viability for pharmaceuticals derived from scarce natural sources.^[35]^[36]

In Biotechnology and Materials

Semisynthesis plays a pivotal role in biotechnology by enabling the creation of specialized enzyme inhibitors and molecular probes derived from natural scaffolds, enhancing research tools for studying biological processes. Similarly, semisynthetic isoflavone glycosides, derived from natural plant metabolites, act as potent inhibitors of tyrosine kinases, offering insights into signaling pathways relevant to cellular regulation and disease mechanisms.^[37] These modifications leverage the inherent bioactivity of natural scaffolds while introducing functional groups for improved specificity and detectability in biotechnological assays.^[38] In materials science, semisynthesis facilitates the development of biodegradable polymers from natural terpenes, providing sustainable alternatives to petroleum-based plastics with customizable mechanical properties. For example, oxidative transformations of pinene, a common terpene, yield monomers that polymerize into polyesters exhibiting high thermal stability and biodegradability under environmental conditions, suitable for packaging and agricultural films.^[39] Biocatalytic semisynthesis of lactone monomers from monoterpenoids further enables the production of renewable polymers with tunable elasticity, where cross-linking adjustments allow for materials ranging from flexible films to rigid composites, reducing reliance on non-renewable feedstocks.^[40] These terpene-derived polymers demonstrate enhanced hydrolytic degradation rates compared to traditional synthetics, supporting eco-friendly applications in consumer goods.^[41] Emerging applications of semisynthesis extend to agrochemicals and cosmetics, where modifications of natural compounds improve efficacy and stability. In agrochemicals, chemical alterations of plant-derived scaffolds, such as semisynthetic chitosan derivatives, enhance plant stress tolerance and growth promotion by modulating hormone-like responses, offering environmentally benign alternatives to synthetic pesticides.^[42] For instance, structural tweaks to natural product extracts enable targeted pest control while minimizing ecological impact.^[43] In cosmetics, semisynthetic derivatives of essential oil components, like carvacryl acetate from carvacrol, provide stabilized antimicrobial agents that maintain fragrance and bioactivity in formulations, reducing volatility and extending shelf life.^[44] Eugenol-based semisynthetics similarly exhibit antifungal properties, supporting their use in preservative-free skincare products.^[45] These innovations are driving growth in bio-based sectors, with the natural cosmetics market projected to reach USD 45.60 billion by 2030, reflecting increasing demand for sustainable, semisynthetic ingredients.^[46]

Advantages and Challenges

Key Benefits

Semisynthesis provides a key efficiency advantage in the production of complex molecules, particularly those derived from natural products, by leveraging pre-existing structural scaffolds to minimize the number of synthetic transformations required compared to total synthesis. In total synthesis, constructing intricate frameworks like that of paclitaxel demands around 40 steps with overall yields as low as 2%, rendering it economically unviable for large-scale manufacturing. In contrast, semisynthesis from precursors such as 10-deacetylbaccatin III involves only 4 steps to attach the critical side chain, achieving yields up to 58% and substantially lowering production costs through reduced labor, reagents, and time.^[47] This step economy can transform multi-decade total synthesis routes exceeding 20 steps into streamlined processes of 5-10 steps for many pharmaceuticals, enabling scalable output without compromising structural complexity.^[48] Beyond operational efficiency, semisynthesis enhances product profiles by allowing targeted modifications that improve therapeutic efficacy, safety, and pharmacokinetic properties over parent natural compounds. For instance, semisynthetic derivatives of natural antibiotics, such as cephalosporins modified from 7-aminocephalosporanic acid, exhibit broader spectra, reduced side effects, and overcome bacterial resistance mechanisms, contributing to their widespread clinical use.^[7] Similarly, in opioid development, buprenorphine—a semisynthetic analog derived from thebaine—demonstrates partial agonism at mu-opioid receptors, resulting in superior analgesia with a lower potential for abuse and respiratory depression compared to full agonists like morphine.^[49] These optimizations not only refine biological activity but also address limitations in natural sources, such as poor bioavailability or toxicity. Semisynthesis promotes sustainability by utilizing renewable natural precursors and integrating biological or engineered pathways that curtail environmental burdens associated with traditional chemical synthesis. Drawing from abundant plant or microbial sources, it avoids exhaustive resource extraction, as exemplified by the shift to plant cell cultures for paclitaxel precursors, which enables year-round production without harvesting endangered yew trees and reduces reliance on wild sourcing.^[47] Engineered microbial systems further minimize impacts through biocatalytic steps that require less organic solvent and generate fewer hazardous byproducts, aligning with green chemistry principles for cost-effective, eco-friendly drug manufacturing.^[50]

Limitations and Considerations

Semisynthesis often depends on the extraction of precursor compounds from natural sources, which can lead to supply chain vulnerabilities due to low yields and environmental pressures on source organisms. For instance, the production of the anticancer drug vinblastine relies on isolating precursors like vindoline and catharanthine from Madagascar periwinkle (Catharanthus roseus), but the plant's low-yielding biosynthesis results in inefficient extraction processes and potential shortages in global supply.^[51] These issues are exacerbated by overharvesting, which threatens the sustainability of wild populations and contributes to biodiversity loss, as seen in the unsustainable collection of medicinal plants for semisynthetic pharmaceuticals.^[52] Technical challenges in semisynthesis include achieving high stereoselectivity during chemical modifications of complex natural scaffolds, where unintended stereoisomers can reduce efficacy or introduce toxicity. In protein semisynthesis, for example, site-specific chemical alterations must navigate chemoselectivity barriers to avoid off-target reactions, complicating the production of homogeneous modified biomolecules.00546-6) Additionally, biological extracts used as starting materials frequently contain impurities such as host cell proteins or degradation products, which can compromise product purity, stability, and regulatory approval, necessitating extensive purification steps that increase costs and complexity.^[14]^[53] Ethical and regulatory concerns arise from semisynthesis's reliance on biodiversity, including the ecological impacts of sourcing from endangered species, and intellectual property hurdles in protecting engineered microbial strains for precursor production. To address these, synthetic biology has enabled shifts to microbial platforms, such as engineering yeast to biosynthesize opioid precursors like thebaine in the 2010s, reducing dependence on plant harvesting while navigating patent challenges for genetically modified organisms.

Notable Examples

Semisynthetic Antibiotics

Semisynthetic antibiotics represent a cornerstone of modern antimicrobial therapy, particularly in the beta-lactam class, where chemical modifications of natural penicillin precursors addressed early limitations such as narrow spectrum and susceptibility to bacterial enzymes. In the 1940s and 1950s, following the isolation of the penicillin nucleus 6-aminopenicillanic acid (6-APA) in 1957, researchers at pharmaceutical companies like Beecham and Bristol-Myers began systematically modifying benzylpenicillin, the original natural product discovered by Fleming in 1928. These efforts yielded second-generation penicillins resistant to beta-lactamases, enzymes produced by resistant bacteria that hydrolyze the beta-lactam ring. A key example is ampicillin, developed in 1958 and introduced commercially in 1961, which features an amino group at the alpha position of the acyl side chain, expanding activity against Gram-negative bacteria like Escherichia coli while retaining efficacy against Gram-positive pathogens.^[54]^[55] Parallel advancements occurred with cephalosporins, derived from the fungus Acremonium chrysogenum (formerly Cephalosporium acremonium), isolated from seawater in Sardinia in 1945 by Giuseppe Brotzu. Cephalosporin C, the primary natural compound, was structurally elucidated in 1955 by Edward Abraham and colleagues at Oxford, revealing a beta-lactam ring fused to a dihydrothiazine ring, distinct from penicillin's five-membered thiazolidine. Semisynthetic modifications in the 1960s, starting with 7-aminocephalosporanic acid (7-ACA) as the core, produced first-generation cephalosporins like cephalothin (1964), which offered beta-lactamase stability and a broader spectrum, including some Gram-negative coverage. These derivatives proved vital in combating staphylococcal resistance that emerged shortly after penicillin's widespread use in the 1940s.^[56]^[57] In the macrolide class, semisynthesis transformed erythromycin, isolated from Streptomyces erythreus in 1952, into more effective agents. Erythromycin's limitations, including poor oral bioavailability and gastrointestinal side effects due to its 14-membered lactone ring, prompted structural tweaks in the 1970s and 1980s. Azithromycin, developed by Pliva in Croatia and approved in 1988, exemplifies this through a Beckmann rearrangement of erythromycin's 9-oxime to insert a nitrogen atom, expanding the ring to 15 members, followed by N-methylation at the inserted nitrogen. This modification enhanced acid stability, tissue penetration, and half-life, improving oral absorption and activity against atypical pathogens like Chlamydia and Legionella, while reducing dosing frequency.^[58]^[59] The impact of semisynthesis on antibiotics is profound, with semisynthetic derivatives accounting for a significant portion of approved antibacterials, predominantly in classes like beta-lactams and macrolides. These modifications have extended efficacy against Gram-negative bacteria, a critical gap in early natural antibiotics, and prolonged the clinical utility of core scaffolds amid rising resistance. For instance, semisynthetic penicillins and cephalosporins now dominate hospital use for infections previously untreatable by natural precursors.^[60]

Semisynthetic Anticancer Drugs

Semisynthetic anticancer drugs represent a significant advancement in oncology, leveraging chemical modifications of natural precursors to enhance efficacy, solubility, and production scalability while targeting key cellular mechanisms such as microtubule dynamics and DNA replication. These agents, derived from plant sources, have become cornerstones in chemotherapy regimens for various cancers, including breast, lung, and hematologic malignancies. By addressing limitations of their natural counterparts, such as low yields and poor pharmacokinetic properties, semisynthesis has enabled broader clinical application and reduced reliance on resource-intensive extraction methods.^[61] Among the most prominent examples are the taxanes, particularly paclitaxel (Taxol), originally isolated from the bark of the Pacific yew tree (Taxus brevifolia). In the 1990s, a semisynthetic route was developed using 10-deacetylbaccatin III (10-DAB), a precursor abundant in yew needles, to couple with a side chain via esterification, yielding paclitaxel with high efficiency. This approach dramatically reduced the environmental impact by minimizing the need for bark harvesting, which previously required processing material from thousands of trees per kilogram of drug and often killed the slow-growing species; semisynthesis from renewable needle sources decreased harvest demands by approximately 1000-fold. Paclitaxel stabilizes microtubules, preventing depolymerization and inducing mitotic arrest, and is widely used in treating ovarian, breast, and lung cancers.^[47]^[61] Vinca alkaloids provide another key class, with vindesine emerging as a semisynthetic derivative of vinblastine in the 1970s. Produced through deacetylation of the vindoline moiety to form a carboxamide group in vinblastine, extracted from the Madagascar periwinkle (Catharanthus roseus), vindesine shows improved aqueous solubility and reduced neurotoxicity compared to the parent compound. This enhancement allowed for better formulation and dosing in clinical settings, particularly for acute lymphoblastic leukemia and Hodgkin's lymphoma, where it binds tubulin to inhibit microtubule assembly and disrupt mitosis. Vindesine's development marked an early success in tailoring vinca alkaloids for improved therapeutic indices.^[62]^[63] Podophyllotoxins exemplify semisynthesis for topoisomerase inhibition, with etoposide derived from podophyllotoxin isolated from mandrake plant (Podophyllum peltatum) extracts in the 1960s. Through selective demethylation at the 4' position and glycosidation with a glucose moiety, etoposide was created to shift activity from microtubule disruption to stabilizing topoisomerase II-DNA cleavage complexes, preventing religation and causing DNA breaks during replication. This modification vastly improved antitumor potency and reduced the cytotoxicity of the natural lignan, making etoposide a standard agent for small cell lung cancer, testicular germ cell tumors, and lymphomas, often in combination therapies.^[64]^[65]

References

[1]
Semi Synthetic Chemistry - TAPI
Semi-synthesis is a type of a chemical synthesis that utilizes compounds isolated from natural sources as starting material, such as bacterial or cell ...
[2]
[PDF] Semi-Synthesis
Semisynthesis uses natural compounds as starting materials, often complex, when total synthesis is too difficult, costly, or inefficient.Missing: organic | Show results with:organic
[3]
Semisynthesis: Bridging natural products and novel anticancer ...
Improved pharmacokinetics: Semisynthetic modifications improve drug absorption and therapeutic effectiveness. •. Reduced side effects: Fine-tuning minimizes ...
[4]
Contemporary advancements in the semi-synthesis of bioactive ...
Semi-synthesis uses natural compounds to create novel ones. Advancements include C-H bond functionalization and skeletal rearrangement methods.<|control11|><|separator|>
[5]
Semi-synthetic Opioids | DrugBank Online
Semi-synthetic Opioids ; Hydrocodone, An opioid agonist used as an analgesic and antitussive agent. ; Hydromorphone, An opioid analgesic used to treat moderate to ...<|control11|><|separator|>
[6]
A New Semisynthesis of Paclitaxel from Baccatin III - ACS Publications
A new method for the semisynthesis of paclitaxel (Taxol) from baccatin III via a dioxo-oxathiazolidine intermediate is reported.
[7]
Semisynthesis: An Essential Tool for Antibiotics Drug Discovery - 2024
Jun 18, 2024 · Semisynthesis is an important technique to harness nature's diversity for novel drugs, utilizing existing natural products as valuable ...Missing: definition | Show results with:definition
[8]
Semisynthesis - GARDP Revive
Semisynthesis extracts a substrate from natural sources, then synthetically modifies it to modulate molecular properties, like drug-like properties.Missing: organic | Show results with:organic
[9]
Semisynthesis - EPFL Graph Search
Semisynthesis, or partial chemical synthesis, is a type of chemical synthesis that uses chemical compounds isolated from natural sources (such as microbial ...
[10]
Organic synthesis | McGraw Hill's AccessScience
Total synthesis In contrast, semisynthesis starts with larger molecules, also often from naturally occurring sources, with fewer reactions needed to reach the ...Missing: bioconversion | Show results with:bioconversion
[11]
Semisynthesis – Knowledge and References - Taylor & Francis
Semisynthesis refers to the process of using a naturally occurring molecule as a basis for creating a new molecule with improved medical and toxicological ...Missing: definition | Show results with:definition
[12]
Bioconversion - an overview | ScienceDirect Topics
Bioconversion, also known as biotransformation, is the conversion of organic materials into usable products or energy sources by biological processes or ...
[13]
Natural Product Synthesis: The Endless Quest for Unreachable ...
Semisynthesis is the specific case in which a molecule is synthesized using a natural product as the starting material. (26) The flagship example of this ...Identifying the Right Common... · Identifying the Right Starting... · ConclusionMissing: bioconversion | Show results with:bioconversion
[14]
Natural products in drug discovery: advances and opportunities
Jan 28, 2021 · Here, we summarize recent technological developments that are enabling natural product-based drug discovery, highlight selected applications and discuss key ...
[15]
Bridging the Gap Between Natural Product Synthesis and Drug ...
This Review article will briefly discuss traditional retrosynthetic strategies and contrast them to selected examples of recent synthetic strategies.
[16]
Emil Fischer – Biographical - NobelPrize.org
His greatest success was his synthesis of glucose, fructose and mannose in 1890, starting from glycerol. This monumental work on the sugars, carried out ...Missing: semisynthesis | Show results with:semisynthesis
[17]
High-Efficiency Biocatalytic Conversion of Thebaine to Codeine
Apr 3, 2020 · Currently, 85–90% of codeine is produced by methylation of morphine, an alkaloid generally more abundant in poppy than codeine, (1) using large ...
[18]
Development of the semi-synthetic penicillins and cephalosporins
Semi-synthetic penicillins and cephalosporins both derive from their respective chemical nuclei, 6-aminopenicillanic acid (6-APA) and 7-aminocephalosporanic ...
[19]
History of the development of corticosteroid therapy - PubMed
Oct 21, 2011 · Several lines of research to produce cortisone semi-synthetically showed some success by 1952. Between 1954 and 1958 six synthetic steroids were ...
[20]
https://doi.org/10.4161/bbug.1.2.10484
[21]
https://doi.org/10.1039/d2cb00231k
[22]
https://doi.org/10.1002/anie.200500767
[23]
https://doi.org/10.1016/j.copbio.2021.07.002
[24]
https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-ingenol-mebutate-actinic-keratosis
[25]
https://doi.org/10.1016/j.apsb.2016.06.003
[26]
Discovery and modification of cytochrome P450 for plant natural ...
Cytochrome P450s are widespread in nature and play key roles in the diversification and functional modification of plant natural products.
[27]
Cytochrome P450 Enzymes as Key Drivers of Alkaloid Chemical ...
Jul 1, 2021 · Cytochrome P450 monooxygenases (P450s) play a key role in generating the structural variety that underlies this functional diversity of alkaloids.
[28]
A Novel Semi-biosynthetic Route for Artemisinin Production Using ...
Mar 9, 2009 · Although there exist multiple routes for both the complete and partial chemical synthesis of artemisinin (7), they are all too low-yielding and ...
[29]
High-Level Production of Amorpha-4,11-Diene, a Precursor of the ...
Previous work showed that high levels of amorpha-4,11-diene, an artemisinin precursor, can be made in Escherichia coli using a heterologous mevalonate pathway ...
[30]
Recent Advances in Artemisinin Production Through Heterologous ...
Additional work, using an E. coli strain with a myriad of optimizations including codon usage, N-terminal engineering, and isolation improvements yielded a ...
[31]
The future of the β-lactams - PMC - NIH
The C-7 N-(α-oxyimino)acyl sidechain of the third-generation cephalosporins improved β-lactamase stability and so enabled exceptional antibacterial efficacy ...
[32]
Beta-Lactam Antibiotic - an overview | ScienceDirect Topics
One option is the optimization of administration strategies of beta-lactams. Due to their time-dependent bacterial killing properties, it seems reasonable ...Missing: ADME | Show results with:ADME<|separator|>
[33]
Development of New Stereoisomeric Drugs May 1992 - FDA
May 1, 1992 · This document focuses on issues relating to the study and pharmaceutical development of individual enantiomers and racemates.
[34]
Multicomponent Reaction-Enabled Semisynthesis of Taxanes Yields ...
Aug 24, 2025 · ... cost vs $497/g market price). Figure 3. Figure 3. Semisynthesis of paclitaxel via the MCR of 10-DBA-cored diazoacetate, silanol, and N-Bz ...
[35]
Research Advances in Clinical Applications, Anticancer Mechanism ...
This paper provides a comprehensive overview of paclitaxel extraction, combination therapy, total synthesis, semi-synthesis and biosynthesis in recent years
[36]
Plant antibacterials: The challenges and opportunities - ScienceDirect
May 30, 2024 · These challenges encompass limited sourcing, the risk of agent rediscovery, suboptimal drug metabolism, and pharmacokinetics (DMPK) properties, ...Missing: variability | Show results with:variability
[37]
Isoflavones, their Glycosides and Glycoconjugates. Synthesis ... - NIH
By studying the biological properties of pseudoglycal genistein glycosides, it was found that the synthesized compounds are inhibitors of tyrosine kinases ...
[38]
Focus on curcumin and its analogs, flavonoids, and marine peptides
Most flavonoids found in nature are phenol rich. This property makes them suitable as promising precursors for the synthesis of labeled compounds, especially ...Review Paper · 2. Biological Activities Of... · 3. Radiolabeling Of...
[39]
Pinene-Based Oxidative Synthetic Toolbox for Scalable Polyester ...
Oct 7, 2021 · This work highlights the potential to apply an oxidative toolbox to valorize inert terpene metabolites enabling generation of biosourced polyesters.
[40]
Biocatalytic Routes to Lactone Monomers for Polymer Production
Mar 13, 2018 · Monoterpenoids offer potential as biocatalytically derived monomer feedstocks for high-performance renewable polymers.
[41]
Improving the Performance of Photoactive Terpene-Based Resin ...
Apr 23, 2024 · We disclose the design of photoactive resins based on terpenes and itaconic acid, both potentially naturally sourced, to prepare photosets with adjustable ...
[42]
The foliar application of a mixture of semisynthetic chitosan ... - Nature
Jun 3, 2019 · Research has shown that chitosan induces plant stress tolerance and protection, but few studies have explored chemical modifications of ...
[43]
Recent advances in the natural products-based lead discovery for ...
This review summarizes the studies on natural products pesticides in recent years, including natural products of chemical modification and biosynthesis.
[44]
Essential Oils: Chemistry and Pharmacological Activities - PMC - NIH
The possible interaction of carvacrol and its semisynthetic derivative, carvacryl acetate, with membrane receptors has been studied [179,180]. The ...
[45]
Semisynthetic Derivatives of Eugenol and their Biological Properties
Aug 8, 2025 · Conclusion: The results suggest that the semisynthetic eugenol derivatives (SEDs) show promising antifungal activity and selectivity against ...
[46]
Natural Cosmetics Market Size, Share & Growth Report 2030
The global natural cosmetics market size was valued at USD 31.84 billion in 2023 and is projected to reach USD 45.60 billion by 2030, growing at a CAGR of 5.3% ...Missing: semisynthetic | Show results with:semisynthetic
[47]
Presidential Green Chemistry Challenge: 2004 Greener Synthetic ...
Dec 11, 2024 · By replacing leaves and twigs with plant cell cultures, BMS improves the sustainability of the paclitaxel supply, allows year-round harvest, and ...
[48]
Comparing total chemical synthesis and total biosynthesis routes to ...
Aug 15, 2024 · Total biosynthesis usually involves fewer chemical steps and those steps move more directly to the target than comparable total chemical ...Missing: bioconversion | Show results with:bioconversion
[49]
Buprenorphine - an attractive opioid with underutilized potentia | JPR
Dec 4, 2015 · Its lower abuse potential and good safety profile make it particularly appealing to family physicians. Buprenorphine in pain treatment.
[50]
Synthesis of medicinally relevant terpenes: reducing the cost and ...
Clearly, semi-synthesis has been the most useful means to access diverse analogs of some natural product classes for use in drug development.
[51]
A microbial supply chain for production of the anti-cancer drug ... - NIH
Aug 31, 2022 · As MIAs are difficult to chemically synthesize, the world's supply chain for vinblastine relies on low-yielding extraction and purification of ...
[52]
Molecules from nature: Reconciling biodiversity conservation and ...
Sep 29, 2020 · BOX 3. A major concern is the overharvesting and unsustainable use of wild medicinal plants, resulting in biodiversity loss; e.g. Encephalartos ...<|separator|>
[53]
Impurity Testing of Biologic Drug Products | BioPharm International
Feb 2, 2018 · Impurities can have a negative impact on the stability, safety, and efficacy of protein therapeutics. “Aggregates are of particular concern, ...
[54]
Forty years of beta-lactam research - PubMed
Much of this work was concerned with the development of the semisynthetic penicillins, following the isolation of the penicillin nucleus, 6-aminopenicillanic ...
[55]
Ampicillin: Rise Fall and Resurgence - PMC - PubMed Central - NIH
May 15, 2014 · Attempts to extend antimicrobial activity of penicillins led to the development of ampicillin [4,7]. Ampicillin, an extended spectrum ...
[56]
A brief history of antibiotics and select advances in their synthesis
Jul 5, 2017 · It is notable that chloramphenicol became the first naturally occurring antibiotic produced by chemical synthesis, rather than fermentation.
[57]
Sir Edward Abraham's contribution to the development of the ...
In 1945, the fungus Cephalosporium acremonium was shown to produce an “antibiotic principle” effective against staphylococcal, streptococcal infections, typhoid ...
[58]
From Erythromycin to Azithromycin and New Potential Ribosome ...
Sep 1, 2016 · Discovery of first macrolide antibiotic erythromycin, and development of semisynthetic macrolides prepared and introduced to medical practice, ...
[59]
[PDF] Pharmaceutical chemistry
Azithromycin (Zithromax) is a semisynthetic derivative of erythromycin, prepared by Beckman rearrangement of the corresponding oxime, followed by N methylation ...<|separator|>
[60]
penicillins [TUSOM | Pharmwiki] - TMedWeb
Aug 30, 2013 · Drug Class: Semisynthetic Penicillins. Mechanism of Action: Same as Penicillin G, but greater activity against gram negative bacteria due to ...
[61]
Paclitaxel and its semi-synthetic derivatives - PubMed Central
Jan 30, 2024 · This review focuses on Paclitaxel (PTX), a plant-based drug derived from Taxus sp., and its ability to treat specific tumors.
[62]
Vindesine - an overview | ScienceDirect Topics
Vindesine (DVAS) was the first semi-synthetic vinca alkaloid derivative introduced into clinical oncology. It differs solely from vinblastine.
[63]
Comparative effects of vindesine, vinblastine, and vincristine on ...
Both microscopic and flow cytofluorimetric studies showed that, of the three drugs, vindesine was the most potent for inhibiting growth and arresting L1210 ...
[64]
Etoposide: four decades of development of a topoisomerase II inhibitor
The history of the development of one of the first identified topoisomerase II inhibitors, etoposide, is reviewed in this paper.
[65]
Etoposide: a semisynthetic epipodophyllotoxin. Chemistry ... - PubMed
Etoposide (VP 16) is a semi-synthetic derivative of 4'- demethylepipodophyllotoxin , a naturally occurring compound synthesized by the North American May ...