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Thymidylate synthase

Thymidylate synthase (EC 2.1.1.45), also known as TYMS, is a homodimeric enzyme that catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP), the sole de novo source of thymine nucleotides essential for DNA biosynthesis.^[1] This reaction utilizes (6R)-N⁵,N¹⁰-methylenetetrahydrofolate as both the one-carbon donor and hydride source, converting it to dihydrofolate as a byproduct, and is conserved across nearly all organisms.^[2] The enzyme's activity is rate-limiting in the thymidylate synthesis pathway, directly supporting DNA replication, repair, and cell proliferation, with inhibition leading to thymineless death in rapidly dividing cells.^[3] Beyond catalysis, thymidylate synthase exhibits regulatory functions, including binding to its own mRNA to autoregulate expression and interacting with apoptosis-related proteins to influence cell cycle progression.^[3] Structurally, it consists of two identical subunits, each around 313 amino acids in humans, featuring a conserved active site with key residues like cysteine for nucleophilic attack and arginine for substrate binding, and it adopts distinct open and closed conformations during catalysis.^[1] The catalytic mechanism proceeds via a multistep process: an active-site cysteine forms a covalent bond with C6 of dUMP, enabling methylene transfer from the folate cofactor, followed by proton abstraction at C5 and hydride transfer to reduce the intermediate, ultimately yielding dTMP.^[4] Due to its pivotal role in nucleotide metabolism, thymidylate synthase is a primary target for anticancer drugs such as 5-fluorouracil, which forms inhibitory ternary complexes, and its polymorphisms influence therapeutic responses in oncology.^[2]

Overview

Discovery and Gene

Thymidylate synthase (TS) was first identified in the 1950s through investigations into thymine biosynthesis pathways in bacteria and eukaryotes, with key early work demonstrating its role in the folate-dependent methylation of deoxyuridine monophosphate to deoxythymidine monophosphate. In 1957, Morris Friedkin and Arthur Kornberg reported the enzymatic conversion of deoxyuridylic acid to thymidylic acid, highlighting the involvement of tetrahydrofolic acid as a cofactor in this process, marking the initial characterization of the enzyme in bacterial systems. Subsequent purification efforts in the early 1960s by Albert J. Wahba and Friedkin from Escherichia coli extracts further confirmed its activity and separated it from inhibitory factors, solidifying TS as a critical enzyme in nucleotide metabolism across organisms. Parallel studies in eukaryotic systems, such as chick embryo extracts, revealed similar folate-dependent activity by the mid-1960s, extending the enzyme's recognition beyond prokaryotes. The human TYMS gene, which encodes thymidylate synthase, is located on chromosome 18p11.32 and spans approximately 19 kb, comprising 8 exons. It produces a 313-amino-acid protein with a molecular weight of about 35 kDa, essential for the enzyme's homodimeric structure. Alternative splicing of TYMS generates multiple transcript variants, including at least 8 isoforms documented in human tissues, which may contribute to regulatory diversity. Additionally, several pseudogenes, such as TYMSP2 on chromosome 19, exist in the human genome, reflecting evolutionary duplication events without functional protein production.^[5] Thymidylate synthase exhibits strong evolutionary conservation, with prokaryotic homologs encoded by the thyA gene in bacteria like E. coli, where it performs an analogous catalytic function despite lower overall sequence similarity to eukaryotic versions. In eukaryotes, including mammals, the enzyme maintains high sequence identity, often exceeding 80-90% between species such as human and mouse, underscoring its fundamental role in DNA precursor synthesis across phyla. Expression of the TYMS gene is elevated in proliferating cells, correlating with increased demand for deoxythymidine monophosphate during DNA replication in S phase. This upregulation is primarily induced by transcription factors such as late SV40 factor (LSF), also known as TFCP2, which binds to the TYMS promoter to drive G1/S transition-specific transcription.

Physiological Importance

Thymidylate synthase (TS) serves as the rate-limiting enzyme in the de novo biosynthesis of deoxythymidine monophosphate (dTMP), the exclusive precursor for deoxythymidine triphosphate (dTTP) required for DNA replication and repair processes in proliferating cells.^[6] This catalytic role ensures the maintenance of balanced nucleotide pools, preventing disruptions in genome integrity during cell division.^[7] Deficiency in TS activity is incompatible with viability, as evidenced by embryonic lethality in mouse models harboring mutations in the Tyms gene, such as a homozygous amino acid substitution at position 106 that abolishes function and results in early developmental arrest.^[8] In humans, impaired TS function due to folate or vitamin B12 deficiencies, which limit the enzyme's cofactor supply, manifests as megaloblastic anemia characterized by ineffective erythropoiesis and macrocytic blood cells from halted DNA synthesis in hematopoietic precursors.^[9]^[10] TS expression is tightly regulated across the cell cycle, with mRNA and protein levels surging up to 20-fold during S-phase to meet heightened dTMP demands for DNA synthesis, primarily under E2F transcription factor control.^[7] Imbalances in TS activity, such as inhibition leading to dTTP depletion, cause elevated dUTP levels and subsequent uracil misincorporation into DNA, which provokes futile base excision repair cycles, double-strand breaks, and activation of apoptosis or mutagenesis pathways.^[11]^[12] Beyond cellular physiology, TS plays a critical role in embryonic development, where its inhibition disrupts neural tube closure and folate-dependent pathways essential for organogenesis.^[13] Certain herpesviruses, including herpesvirus saimiri and ateles, encode their own TS homologs to hijack host nucleotide metabolism, facilitating efficient viral DNA replication independently of cellular enzyme availability.^[14]^[15]

Structure and Properties

Protein Architecture

Thymidylate synthase (TS) is a single-domain enzyme with a molecular weight of approximately 35 kDa per monomer in humans, comprising 313 amino acid residues. The overall fold is an α/β structure characterized by a central mixed β-sheet of six to eight strands flanked by α-helices, forming three layers that create a binding cleft for substrates. This topology includes seven α-helices and ten β-strands, with the N-terminal region (residues 1–100) implicated in regulatory functions such as mRNA binding and protein stability, while the C-terminal core (residues ~200–313) houses the primary catalytic elements. The structure maintains a conserved architecture across species, enabling efficient substrate recognition and catalysis. TS functions as an obligate homodimer, essential for enzymatic activity, with each active site located at the monomer-monomer interface. Dimerization involves an extensive interface formed by the association of five-stranded β-sheets from adjacent monomers, supplemented by helical and loop contacts, burying approximately 2,400 Å² of surface area per subunit—equivalent to about 20% of the total monomeric surface. This quaternary arrangement stabilizes the protein and facilitates half-of-the-sites reactivity, where only one subunit is catalytically active at a time. In eukaryotes, the homodimeric state is particularly stable, with mutations disrupting the interface leading to monomeric forms that exhibit reduced activity and increased susceptibility to degradation. Key structural motifs include a Rossmann-like fold in the nucleotide-binding region, consisting of a parallel β-sheet flanked by helices that accommodate the deoxyuridine monophosphate (dUMP) substrate. Conserved residues, such as Cys195 in human TS (UniProt P04818), are positioned within this fold and play critical roles in catalysis by forming a covalent intermediate with the substrate. Crystal structures of human TS, such as those resolved at 2.0 Å (PDB ID: 5X5D) and 2.0 Å (PDB ID: 1HW3), reveal these features in detail, highlighting subtle conformational shifts between active and inactive states without ligands. While eukaryotic TS is consistently dimeric, bacterial ThyA enzymes share a similar homodimeric architecture, though some prokaryotic ThyX variants form tetramers with distinct interfaces.

Active Site Features

The active site of thymidylate synthase features a hydrophobic cleft that serves as the dUMP binding pocket, accommodating the pyrimidine base and deoxyribose through van der Waals interactions with residues such as Ile108 and Leu198, while polar residues like Arg50, Arg215, and Asn177 form hydrogen bonds with the phosphate and uracil base, stabilizing the substrate in a productive orientation. Upon dUMP binding, insert regions I (residues 117–128) and II (residues 146–153) along with the flexible loop (residues 181–197) undergo closure over the active site, sealing the pocket and positioning the substrate for catalysis; this ordered binding precedes folate cofactor association and shifts the enzyme toward the active conformation.^[16]^[17] Adjacent to the dUMP pocket lies the folate cofactor binding site, a narrow cleft that accommodates 5,10-methylenetetrahydrofolate (MTHF), with conserved residues Tyr258 and Asp169 playing critical roles in orienting the pterin ring and pteridine moiety to enable the subsequent hydride transfer from the cofactor to the enzyme-substrate intermediate. Hydrophobic stacking interactions involving Trp109 and Phe225 further secure the folate's glutamyl tail and methylene bridge, ensuring efficient one-carbon transfer; in inhibitor complexes, antifolates like raltitrexed occupy this pocket, mimicking MTHF and inducing similar closure of the active site loops.^[16]^[18] Key catalytic residue Cys195 is central to the active site's chemistry, where the deprotonated thiol acts as the nucleophile to attack the C6 position of dUMP, with Arg127 stabilizing the oxyanion intermediate through electrostatic interactions; mutations or allosteric perturbations can reposition Cys195 away from the site, rendering the enzyme inactive. Inhibitor binding often triggers allosteric changes at the dimer interface that propagate to the active site, altering residue orientations and hydride transfer efficiency.^[17]^[19] The active site's structural dynamics are characterized by equilibrium between open and closed conformations, with NMR spectroscopy revealing millisecond-to-microsecond timescale exchanges in the loop 181–197 region that flip approximately 180° to enclose ligands, enhancing substrate specificity and excluding solvent. These shifts are modulated by pH-dependent protonation of residues like His258 and Asp169, which influence loop flexibility and readiness for catalysis; at physiological pH, the closed state predominates upon dual substrate binding, optimizing catalytic turnover.^[20]^[21]

Biochemical Function

Catalyzed Reaction

Thymidylate synthase (EC 2.1.1.45) catalyzes the reductive methylation of 2'-deoxyuridine 5'-monophosphate (dUMP) to 2'-deoxythymidine 5'-monophosphate (dTMP), utilizing (6R)-5,10-methylenetetrahydrofolate (5,10-MTHF) as the one-carbon donor and producing 7,8-dihydrofolate (DHF) as a byproduct.^[22]^[23] This reaction is the sole de novo source of dTMP, an essential precursor for DNA synthesis in proliferating cells.^[24] The stoichiometry of the reaction maintains a 1:1 ratio between dUMP and 5,10-MTHF, reflecting the direct transfer of the methylene group from the cofactor to the substrate.^[25] The standard free energy change (ΔG°) for the overall reaction is approximately -34 kcal/mol, rendering it highly exergonic and irreversible under physiological conditions due to the large positive entropy contribution and the subsequent rapid reduction of DHF to tetrahydrofolate.^[26] This thermodynamic favorability ensures efficient dTMP production, tying into the broader folate regeneration cycle where DHF is reduced by dihydrofolate reductase to sustain one-carbon metabolism.^[26] Kinetic parameters for the human enzyme demonstrate tight binding to dUMP with a Km of approximately 3 μM, while the Km for 5,10-MTHF is around 6 μM, indicating moderate affinity for the cofactor.^[21]^[27] The turnover number (kcat) for human thymidylate synthase is about 3 s⁻¹, though Vmax values vary across species, with the human enzyme typically achieving around 1–3 s⁻¹ per active subunit in the homodimeric structure.^[21] These parameters highlight the enzyme's efficiency in nucleotide biosynthesis under cellular nucleotide concentrations. Although dTMP can be generated via the salvage pathway through phosphorylation of thymidine by thymidine kinase, thymidylate synthase dominates de novo synthesis, particularly in rapidly dividing cells where exogenous thymidine availability is limited.^[28]

Cofactors and Substrates

Thymidylate synthase (TS) utilizes 2'-deoxyuridine-5'-monophosphate (dUMP) as its primary substrate, which is generated through the reduction of uridine diphosphate (UDP) to deoxyuridine diphosphate (dUDP) by ribonucleotide reductase, followed by phosphorylation to dUTP and hydrolysis by dUTPase to yield dUMP. dUMP can also be produced de novo via deamination of dCMP by dCMP deaminase.^[29]^[30] The essential cofactor for TS is 5,10-methylenetetrahydrofolate (MTHF), a folate derivative that donates a one-carbon unit during catalysis; MTHF is primarily synthesized from tetrahydrofolate (THF) and serine via the reversible reaction catalyzed by serine hydroxymethyltransferase (SHMT).^[31]^[32] The TS reaction produces dihydrofolate (DHF) as a byproduct, which must be recycled back to THF by the enzyme dihydrofolate reductase (DHFR) using NADPH as a reductant to sustain the folate pool for ongoing thymidylate synthesis.^[33] In biochemical assays and structural studies of TS, analogs such as fluorinated dUMP variants (e.g., 5-fluoro-2'-deoxyuridine-5'-monophosphate, FdUMP) are employed to mimic the substrate and probe binding interactions, while cofactor mimics like 5-formyltetrahydrofolate (5-FTHF) are used to stabilize enzyme complexes for crystallographic analysis.^[34]^[35]

Enzymatic Mechanism

Step-by-Step Catalysis

Thymidylate synthase (TS) catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) through an ordered sequential mechanism. In the first step, dUMP binds to the enzyme, inducing a conformational change that creates a binding site for the second substrate, N⁵,N¹⁰-methylenetetrahydrofolate (MTHF). This is followed by MTHF binding, forming a non-covalent ternary complex (E-dUMP-MTHF).^[2] The second step involves a nucleophilic attack by the conserved active-site cysteine residue (Cys146 in Escherichia coli TS or equivalent in eukaryotes) on the C6 position of dUMP. This addition across the C5=C6 double bond of dUMP generates a covalent ternary complex (E-dUMP-MTHF), where the cysteine is linked to C6 and an enolate forms at C5 of the dUMP moiety. Key active-site residues, such as Arg and Asn, stabilize the enolate through hydrogen bonding.^[2] In the third step, a β-elimination reaction transfers the methylene group from MTHF to the C5 enolate of dUMP, forming an exocyclic methylene intermediate at C5. Concurrently, a hydride is transferred from the C6 position of the pterin ring in MTHF to the exocyclic methylene intermediate at C5 of dUMP, cleaving the N⁵-CH₂ bond and releasing dihydrofolate (DHF) as a product. This hydride transfer is a critical redox step that reduces the methylene to a methyl group while oxidizing MTHF to DHF.^[36] The final step entails proton abstraction from the enzyme to regenerate the active-site cysteine thiolate, followed by release of the dTMP product from the covalent E-dTMP complex. The rate-limiting step in the overall catalytic cycle is the dissociation of this product complex.^[37] Evidence for the hydride transfer mechanism comes from isotope labeling studies, including ³H experiments showing incorporation of tritium from labeled MTHF into dTMP, confirming the hydride's role in the redox transformation.^[36]

Inhibitory Interactions

Thymidylate synthase (TS) is subject to competitive inhibition by 5-fluoro-2'-deoxyuridine-5'-monophosphate (FdUMP), a metabolite of the chemotherapeutic agent 5-fluorouracil, which structurally mimics the natural substrate deoxyuridine monophosphate (dUMP). FdUMP binds to the dUMP recognition site on TS, initiating the formation of a covalent bond with the catalytic cysteine residue (Cys195 in human TS), similar to the initial step in the native catalytic mechanism.^[38]^[39] In the presence of the cofactor 5,10-methylenetetrahydrofolate (5,10-MTHF), this leads to a stable, catalytically inactive ternary complex comprising TS, FdUMP, and 5,10-MTHF, effectively trapping the enzyme in a dead-end state.^[39]^[40] The inhibition constant (Ki) for FdUMP binding to human TS typically ranges from 0.8 to 2.4 nM, reflecting its high affinity and potency as a suicide inhibitor.^[41] The fluorine atom at the 5-position of FdUMP plays a critical role in this mechanism-based inactivation by stabilizing the enol intermediate formed after hydride transfer from 5,10-MTHF. In the uninhibited reaction, this enol tautomerizes and eliminates a proton to yield dTMP, but the C-F bond resists elimination of hydrogen fluoride (HF), preventing product release and perpetuating the covalent adduct.^[42]^[43] X-ray crystallographic studies of the inhibitory ternary complex confirm that the fluorine substitution induces a conformational lock in the active site, with the cofactor's pteridine ring positioned to maintain the stalled state.^[42] In contrast, inhibitors like raltitrexed, a quinazoline-based antifolate analog, exert noncompetitive or mixed inhibition by binding directly to the folate-binding pocket of TS, distinct from the dUMP site.^[44] This binding induces allosteric conformational changes, particularly in the active site loop (residues 181-197 in human TS), stabilizing an inactive "closed" conformation that hinders substrate access and catalysis.^[16] Structural analyses reveal that raltitrexed's interaction with key residues in the folate site promotes dimer interface adjustments that propagate to lock the enzyme in a catalytically unproductive state.^[16]^[45] Resistance to TS inhibitors often arises from mutations that alter inhibitor binding affinity, with the catalytic Cys195 serving as a hotspot. The C195S mutation, for instance, replaces the nucleophilic cysteine with serine, abolishing the covalent linkage to FdUMP and thereby reducing inhibitor potency while impairing native enzymatic activity.^[46]^[47] Such variants, observed in experimental mutagenesis studies modeling clinical resistance, exhibit markedly higher Ki values for FdUMP (often >100-fold increase compared to wild-type ~1 nM), underscoring the structural basis for evasion of suicide inhibition.^[41]^[47]

Regulation and Expression

Transcriptional Control

The human TYMS gene promoter is TATA-less and spans a region approximately 400 base pairs upstream of the transcription start site, featuring multiple GC-rich elements that serve as binding sites for the transcription factor Sp1, which drives basal promoter activity and cell cycle-dependent expression.^[48] These Sp1 sites, located within the proximal promoter, interact with nuclear factors to maintain constitutive transcription, while cell cycle-responsive elements, including E2F-binding motifs, enable upregulation during the G1/S transition.^[49] E2F family members, particularly E2F1, positively regulate TYMS transcription, correlating with increased mRNA levels in proliferating cells.^[50] TYMS expression is induced by mitogenic signals, leading to enhanced transcription. Under cellular stress conditions like DNA damage, the tumor suppressor p53 represses TYMS promoter activity—as demonstrated in mouse models—reducing expression to limit DNA synthesis and promote cell cycle arrest.^[51] At the post-transcriptional level, microRNAs contribute to TYMS regulation, with miR-215 directly targeting the 3' untranslated region (3'UTR) of TYMS mRNA to suppress translation and promote mRNA degradation, particularly in p53-responsive contexts such as colorectal tumors.^[52] This miR-215-mediated downregulation sensitizes cells to thymidylate stress and antifolate chemotherapies by limiting TS protein levels.^[53]

Cellular Localization

Thymidylate synthase (TS), encoded by the TYMS gene, is predominantly localized in the cytosol of non-proliferating cells, where it maintains basal levels of deoxythymidine monophosphate (dTMP) synthesis. Upon progression into the S-phase of the cell cycle, TS undergoes regulated nuclear translocation as part of a multienzyme complex involved in de novo thymidylate biosynthesis. This shift is mediated by small ubiquitin-like modifier (SUMO) conjugation, primarily through the action of the E2-conjugating enzyme Ubc9, which modifies TS along with serine hydroxymethyltransferase 1 (SHMT1) and dihydrofolate reductase (DHFR). Although TS lacks a classical nuclear localization signal (NLS) at its N-terminus, sumoylation facilitates its recognition by the nuclear import machinery, enabling passage through nuclear pores despite its dimeric structure (~72 kDa).^[54]^[55] In the nucleus, the TS homodimer associates with sites of active DNA replication, ensuring localized dTMP production to support nucleotide demands during genome duplication. Nuclear pores accommodate the dimer's import via energy-dependent transport, and the enzyme's activity peaks in S-phase, correlating with elevated expression from transcriptional induction. Experimental evidence from cell fractionation, immunofluorescence, and sumoylation inhibition studies demonstrates this dynamic localization, showing that blocking sumoylation retains TS in the cytosol and impairs dTMP synthesis, leading to uracil misincorporation in DNA. The protein exhibits a short half-life in proliferating cells, contributing to its rapid turnover and cell cycle responsiveness.^[54]^[56] Pathological alterations in TS localization occur in certain cancers, where increased cytoplasmic retention is observed, potentially linked to post-translational modifications such as phosphorylation that hinder nuclear import. For instance, in colorectal and lung cancers, predominantly cytoplasmic TS expression correlates with altered enzymatic function and therapeutic resistance, deviating from the S-phase nuclear enrichment seen in normal proliferating cells. While mitochondrial isoforms of related folate pathway enzymes exist in select tissues, human TS remains primarily cytosolic-nuclear without confirmed mitochondrial localization.^[57]^[58]^[59]

Clinical and Therapeutic Relevance

Role in Cancer Biology

Thymidylate synthase (TS), encoded by the TYMS gene, is frequently overexpressed in various human malignancies, contributing to tumor progression and adverse clinical outcomes. Elevated TS protein and mRNA levels have been documented in cancers including colorectal, breast, lung, and hepatocellular carcinoma (HCC), often correlating with aggressive tumor features such as increased invasion and metastasis. For instance, in colorectal cancer, TS protein levels can vary up to 60-fold higher in tumor biopsies compared to normal tissues, while in HCC, TYMS mRNA expression is significantly upregulated, with high levels associated with shortened overall survival based on TCGA-LIHC datasets. This overexpression is driven in part by E2F1 regulation and supports the metabolic demands of rapidly dividing cancer cells.^[60]^[61]^[62] The pro-proliferative role of TS in cancer biology stems from its essential function in de novo thymidylate biosynthesis, converting deoxyuridine monophosphate (dUMP) to deoxythymidine monophosphate (dTMP) to fuel DNA replication and repair. In oncogenic contexts, TS overexpression enables sustained nucleotide supply for high-rate DNA synthesis in proliferating tumor cells, including those in nutrient-poor or hypoxic microenvironments common to solid tumors. This activity not only promotes cell cycle progression but also mitigates DNA damage from uracil misincorporation; in TS-deficient states, cells may rely on uracil-DNA glycosylase (UNG) pathways for repair, but overexpression bypasses such vulnerabilities by ensuring dTMP availability and reducing reliance on base excision repair mechanisms. Studies demonstrate that catalytically active TS induces cellular transformation, anchorage-independent growth, and tumor formation in vivo, underscoring its direct contribution to oncogenesis.^[60]^[61]^[63] As a biomarker, TS expression levels serve as a prognostic indicator in multiple cancers, with high TS correlating to increased metastasis risk and poorer survival. Immunohistochemical (IHC) analysis of TS in tumor tissues often employs semi-quantitative scoring systems based on staining intensity and proportion of positive cells, such as high (>50% positive) versus low expression thresholds, to stratify patients. In colorectal and non-small cell lung cancers, elevated TS detected via IHC predicts adverse outcomes, including reduced disease-free survival, independent of stage. Similarly, in HCC and breast cancer, high TYMS mRNA or protein levels forecast metastasis and recurrence, guiding risk assessment without delving into therapeutic responses.^[64]^[65]^[66] Emerging research highlights TS's involvement beyond oncology, particularly through TYMS polymorphisms influencing non-cancer diseases. Post-2023 studies have linked TYMS variants to altered enzyme activity in folate metabolism pathways, associating them with methotrexate response in autoimmune disorders like rheumatoid arthritis, where certain genotypes predict treatment efficacy and toxicity. Additionally, TYMS polymorphisms have been implicated in cardiovascular conditions such as ischemic stroke, potentially via disrupted nucleotide balance and homocysteine regulation. These findings suggest broader clinical utility for TS genotyping in personalized medicine for metabolic and inflammatory disorders.^[67]^[68]

Drug Targeting Strategies

Thymidylate synthase (TS) serves as a critical therapeutic target in cancer treatment due to its role in nucleotide synthesis, with inhibitors designed to disrupt DNA replication in rapidly dividing tumor cells. The cornerstone TS inhibitor is 5-fluorouracil (5-FU), approved by the FDA in 1962 for colorectal cancer and other solid tumors, which acts as a prodrug metabolized to 5-fluoro-2'-deoxyuridine-5'-monophosphate (FdUMP). FdUMP forms a covalent ternary complex with TS and 5,10-methylenetetrahydrofolate, irreversibly inhibiting enzyme activity and depleting thymidine pools essential for DNA synthesis. Another key agent is raltitrexed (Tomudex), a direct folate analog and quinazoline-based TS inhibitor approved in Europe in 1998 for first-line treatment of advanced colorectal cancer, offering a convenient once-every-three-weeks intravenous schedule as an alternative to 5-FU regimens. Combination therapies enhance the efficacy of TS inhibition by stabilizing inhibitory complexes and improving pharmacokinetics. The pairing of 5-FU with leucovorin (folinic acid) increases intracellular levels of 5,10-methylenetetrahydrofolate, thereby stabilizing the FdUMP-TS ternary complex and potentiating cytotoxicity, a strategy established as standard in colorectal cancer protocols since the 1980s. Capecitabine, an oral prodrug of 5-FU approved in 2001, undergoes tumor-selective enzymatic conversion to FdUMP, providing comparable efficacy to intravenous 5-FU with reduced administration burden and has become a preferred option in metastatic colorectal cancer. Emerging agents address limitations in refractory settings and delivery challenges. TAS-102 (trifluridine-tipiracil), approved in 2015 for refractory metastatic colorectal cancer and in 2019 for previously treated metastatic gastric or gastroesophageal junction adenocarcinoma, incorporates trifluridine into DNA to induce chain termination, with tipiracil enhancing bioavailability; while it indirectly affects TS pathways, it offers survival benefits in patients progressed on prior fluoropyrimidines.^[69] Nanoparticle-based delivery systems, such as solid lipid nanoparticles loaded with TS-inhibitory peptides or 5-FU conjugates, have demonstrated enhanced tumor penetration and reduced systemic toxicity in preclinical models, representing a promising avenue for TS-specific targeting in solid tumors. Resistance to TS inhibitors often arises from TS overexpression or altered pharmacokinetics, prompting personalization strategies via genotyping. The TYMS*2/*2 (2R/2R) polymorphism in the TYMS gene promoter region correlates with low TS expression, predicting improved response and survival to 5-FU-based therapies in colorectal cancer patients. NUC-3373, a novel TS inhibitor, has been evaluated in clinical trials combined with standard agents in metastatic colorectal cancer and as monotherapy in advanced solid tumors, aiming to optimize dosing and overcome resistance through direct FdUMP delivery with minimized catabolism.

References

[1]
Bacterial versus human thymidylate synthase: Kinetics and ... - NIH
May 1, 2018 · Thymidylate Synthase (TSase) is a highly conserved enzyme that catalyzes the production of the DNA building block thymidylate.Protein Expression And... · Hydride Transfer Kinetic... · Effect Of Mg
[2]
Concerted versus Stepwise Mechanism in Thymidylate Synthase
Thymidylate synthase (TSase) catalyzes the intracellular de novo formation of thymidylate (a DNA building block) in most living organisms, ...
[3]
Thymidylate Synthase - an overview | ScienceDirect Topics
Thymidylate synthase has a dual function, acting both as an enzyme and as a regulator of its own expression by binding and inactivating its own RNA. As a ...
[4]
Molecular Mechanism of Thymidylate Synthase Inhibition by N4 ...
Thymidylate synthase (EC 2.1.1.45) catalyzes the dUMP methylation reaction, involving N5,10-methylenetetrahydrofolate (meTHF)-aided concerted transfer and ...
[5]
dUTPase inhibition confers susceptibility to a thymidylate synthase ...
Nov 2, 2020 · Thymidylate synthase (TS) is the rate-limiting enzyme in the conversion of dUMP to dTMP and is responsible for de novo dTTP synthesis. The ...1 Introduction · 3 Results · 4 Discussion
[6]
Targeting Nuclear Thymidylate Biosynthesis - PMC - NIH
Thymidylate (dTMP) biosynthesis plays an essential and exclusive function in DNA synthesis and proper cell division, and therefore has been an attractive ...
[7]
Targeting nuclear thymidylate biosynthesis. - Abstract - Europe PMC
Mice homozygous for a single amino acid change at position 106 in TYMS, generated through N-ethyl-N-nitrosourea (ENU) mutagenesis, display an early embryonic ...Targeting Nuclear... · 2. Causes And Consequences... · 3. De Novo Thymidylate...
[8]
Vitamin B12 and the Megaloblastic Development - Science
It therefore appears that the megaloblastosis that is associated with vitamin B12 deficiency is related to low thymidylate synthetase activity. Formats ...
[9]
Folate rescues vitamin B12 depletion-induced inhibition of ... - PNAS
May 1, 2017 · Clinical vitamin B12 deficiency can result in megaloblastic anemia, which results from the inhibition of DNA synthesis by trapping folate ...
[10]
Genome-wide alterations of uracil distribution patterns in human ...
Sep 21, 2020 · Numerous anti-cancer drugs perturb thymidylate biosynthesis and lead to genomic uracil incorporation contributing to their antiproliferative ...<|control11|><|separator|>
[11]
Thymidylate synthase inhibitory drugs induce p53-dependent ...
Sep 6, 2025 · Inhibition of TS disrupts the dUTP:dTTP balance, leading to uracil misincorporation, futile base excision repair cycles, DNA strand breaks, and ...Ts-Rna-Immunoprecititation... · Results · Discussion
[12]
Inhibition of thymidylate synthase affects neural tube development in ...
Our aim was to investigate the role of dTMP dysmetabolism via inhibition of TYMS by an inhibitor, 5-fluorouracil (5-FU) in the occurrence of neural tube defects ...Missing: deficiency | Show results with:deficiency
[13]
trans activation of the thymidylate synthase promoter of herpesvirus ...
Abstract. Herpesvirus saimiri has been shown to possess a thymidylate synthase (TS) gene that is unusual in its transcriptional regulation.
[14]
Thymidylate Synthase Gene of Herpesvirus Ateles - PubMed
The gene is transcribed into an unspliced 2.4-kilobase mRNA that is abundantly expressed late in virus replication.
[15]
Structural analyses of human thymidylate synthase reveal a site that ...
Thymidylate synthase (TS) is the sole enzyme responsible for de novo biosynthesis of thymidylate (TMP) and is essential for cell proliferation and survival.Missing: homodimer | Show results with:homodimer
[16]
Structures of human thymidylate synthase R163K with dUMP ... - NIH
Thymidylate synthase (TS) catalyzes the reductive methylation of the nucleotide deoxyuridylate (dUMP) to thymidylate (TMP) using 5,10-methylenetetrahydrofolate ...Missing: homodimer | Show results with:homodimer
[17]
https://pmc.ncbi.nlm.nih.gov/articles/PMC3016017/
[18]
https://doi.org/10.1107/S0907444910044732
[19]
Dynamic allostery in substrate binding by human thymidylate synthase
Oct 6, 2022 · Thymidylate synthases (TS) are enzymes which convert deoxyuridine monophosphate (dUMP) and methylenetetrahydrofolate (mTHF) into deoxythymidine ...
[20]
Variants of human thymidylate synthase with loop 181–197 ... - NIH
Loop 181–197 of human thymidylate synthase (hTS) populates two major conformations, essentially corresponding to the loop flipped by 180°.Missing: homodimer | Show results with:homodimer
[21]
TYMS - Thymidylate synthase - Homo sapiens (Human) | UniProtKB
Catalyzes the reductive methylation of 2'-deoxyuridine 5'-monophosphate (dUMP) to thymidine 5'-monophosphate (dTMP), using the cosubstrate, ...Missing: span | Show results with:span
[22]
2.1.1.45 thymidylate synthase - Expasy - ENZYME
ENZYME entry: EC 2.1.1.45. PURL: https://purl.expasy.org/enzyme/EC/2.1.1.45. Accepted Name. thymidylate synthase. Reaction catalysed. dUMP + (6R)-5,10-methylene ...Missing: catalyzed | Show results with:catalyzed
[23]
[Thymidylate Synthase-Catalyzed Reaction Mechanism] - PubMed
Thymidylate synthase ThyA (EC 2.1.1.45;-encoded by the Tyms gene), having been for 60 years a molecular target in chemotherapy, catalyses the dUMP ...
[24]
KEGG ENZYME: 2.1.1.45
EC 2.1.1.45 Enzyme. Name. thymidylate synthase; dTMP synthase; thymidylate ... Reaction(IUBMB). 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + ...Missing: catalyzed | Show results with:catalyzed
[25]
https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.45
[26]
Intracellular quantitative detection of human thymidylate synthase ...
Jun 2, 2016 · The TS activity depends on the structural integrity of the C-terminal region and the proteasomal degradation of human TS is ubiquitin- ...
[27]
Relative activities of thymidylate synthetase and thymidine kinase in ...
Thymidylate synthetase (TS) and thymidine kinase (TK) are known to catalyse the methylation of dUMP for the de novo synthesis of dTMP and the phosphorylation ...
[28]
Nucleotide Metabolism - PMC - NIH
UDP to dUDP is catalyzed by ribonucleotide reductase. Subsequently, dUDP is converted to dUMP. The methylation of dUMP to generate dTMP is catalyzed by ...
[29]
Serine hydroxymethyltransferase as a potential target of ... - Nature
Jun 23, 2022 · SHMT produces 5,10-methylenetetrahydrofolate (CH2-THF) from THF by converting serine into glycine. CH2-THF acts as a 1C unit carrier and is used ...
[30]
The Role of Serine Hydroxymethyltransferase and Methylene ...
Apr 1, 2015 · The conversion of tetrahydrofolate (THF) to 5,10-methyleneTHF is catalyzed by the isozymes serine hydroxymethyltransferase 1 and 2 (SHMT1, ...
[31]
Thymidylate Synthase - an overview | ScienceDirect Topics
Thymidylate synthase (EC 2.1.1.45) is a ubiquitous enzyme, which performs an essential function in the synthesis of DNA precursors in all living cells.
[32]
dUMP/F-dUMP Binding to Thymidylate Synthase: Human Versus ...
Jul 6, 2020 · We show that MtbThyX prefers deprotonated dUMP (enolate form) as the substrate, whereas hThyA binds to the keto form of dUMP.
[33]
The structure of Enterococcus faecalis thymidylate synthase ... - NIH
The crystal structure of thymidylate synthase from E. faecalis was obtained as a native complex with 5-formyltetrahydrofolate (5-FTHF).
[34]
Thymidylate Synthase Catalyzed H-transfers: Two Chapters in One ...
Thymidylate synthase (TSase) catalyzes a complex reaction that involves many ... (ΔG0) and the reorganization energy (λ) to approach the tunneling ready ...
[35]
Kinetic scheme for thymidylate synthase from Escherichia coli
We have determined kinetic and thermodynamic constants governing binding of substrates and products to thymidylate synthase from Escherichia coli (TS)Missing: k_off 0.1
[36]
Mechanisms of action of FdUMP[10]: metabolite activation and ...
FdUMP[10] is a multimer of FdUMP, a suicide inhibitor of thymidylate synthase (TS), and was designed to bypass resistance to 5-fluorouracil (5FU).
[37]
Induction of thymidylate synthase as a 5-fluorouracil resistance ...
FdUMP forms a relatively stable ternary complex with TS and CH(2)THF, which is further stabilized by leucovorin (LV). 5FU treatment can induce TS expression, ...
[38]
Molecular Mechanism of Thymidylate Synthase-Catalyzed ... - PubMed
Thymidylate synthase is a target enzyme in anticancer, antiviral, antifungal and antiprotozoan chemotherapy. With two dUMP analogues, 5-fluoro-dUMP (FdUMP) ...
[39]
Thymidylate Synthase Level as the Main Predictive Parameter for ...
... Ki values for FdUMP (Table 3). Kms varied from 1.46 (SW1116) to 8.22 μm (Colo205). The Kis range from 0.82 nm (Colo320) to 2.41 nm (Colo201) with a median value ...
[40]
Stereochemical mechanism of action for thymidylate synthase based ...
... 5-fluoro-2'-deoxyuridylate and 5,10-methylenetetrahydrofolate. J Mol Biol ... 5 of dUMP to C-11 of the cofactor. The elimination itself may be catalyzed ...
[41]
Full article: The role of fluorine in medicinal chemistry
... thymidylate synthase and leads to decreased thymidine formation and hence reduced DNA synthesis. This inhibition is caused by the unreactive fluorine at the ...<|control11|><|separator|>
[42]
Raltitrexed (Tomudex) - PubMed
Raltitrexed (Tomudex) is a new specific, mixed non-competitive inhibitor of thymidylate synthase indicated for use in the therapy of advanced colorectal cancer.
[43]
1HVY: Human thymidylate synthase complexed with ... - RCSB PDB
Human thymidylate synthase is in the closed conformation when complexed with dUMP and raltitrexed, an antifolate drug · Total Structure Weight: 135.83 kDa · Atom ...
[44]
Destabilizers of the thymidylate synthase homodimer accelerate its ...
Destabilizers of the thymidylate synthase homodimer accelerate its proteasomal degradation and inhibit cancer growth.
[45]
Random Sequence Mutagenesis and Resistance to 5-Fluorouridine ...
Thymidylate synthase (TS) catalyzes the methylation of dUMP to dTMP and is the target for the widely used chemotherapeutic agent 5-fluorouracil.
[46]
Identification of Functional Elements in the Promoter Region of the ...
Therefore, the Sp1 motif seems to be a major contributor to the basic promoter activity of the human TS gene, although multiple positive and negative regulatory ...Missing: TYMS | Show results with:TYMS
[47]
Thymidylate synthase expression correlates closely with E2F1 ...
Thymidylate synthase (TS) is thought to be one of the target genes that the E2F1 transcription factor binds to and regulates.Missing: TYMS | Show results with:TYMS
[48]
TYMS promotes genomic instability and tumor progression in Ink4a ...
Apr 27, 2023 · TYMS transcription is regulated by the E2F family of transcription factors [11,12,13] that controls the transition from G1 to S phase of the ...
[49]
role of gefitinib-induced down-regulation of thymidylate synthase.
Gefitinib inhibited the expression of the transcription factor E2F-1, resulting in the down-regulation of thymidylate synthase at the mRNA and protein levels.
[50]
Inhibition of Mouse Thymidylate Synthase Promoter Activity by the ...
We found that wild-type p53 inhibited TS promoter activity by greater than 95% but had a strong stimulatory effect on an artificial promoter that contained ...Missing: TYMS repressed
[51]
Molecular mechanism of chemoresistance by miR-215 in ...
DHFR and TS are the direct targets of miR-215. (A) The 3'UTR of DHFR mRNA contains a putative binding site of miR-215. The 3'UTR of TS harbors two putative ...
[52]
miR-192/miR-215 Influence 5-Fluorouracil Resistance through Cell ...
We took a systematic approach to identify which miRNAs may target TYMS protein. We showed that miR-192/miR-215 downregulate TYMS expression. However, miR-192/ ...
[53]
Regulation of mammalian nucleotide metabolism and biosynthesis
Although the promoters of the nucleotide genes have binding sites for a variety of transcription factors, there are many in common, one that stands out is MYC ( ...
[54]
Nuclear Localization of de Novo Thymidylate Biosynthesis Pathway ...
... nuclear localization of the thymidylate biosynthesis pathway, and elevated . ... thymidylate synthase (TYMS), which catalyzes the conversion of methyleneTHF ...
[55]
Nuclear localization of de novo thymidylate biosynthesis pathway is ...
Dec 23, 2011 · ... thymidylate synthase (TYMS), and dihydrofolate reductase. In G1 ... Nuclear localization of de novo thymidylate biosynthesis pathway is ...
[56]
Identification of a de novo thymidylate biosynthesis pathway ... - PNAS
Aug 26, 2011 · In this study, a de novo dTMP biosynthesis pathway was identified in mammalian mitochondria that includes a unique mitochondrial isozyme of DHFR ...
[57]
Role of N-terminal residues in the ubiquitin-independent ...
Thymidylate synthase (TS) catalyses the reductive methylation of dUMP to form dTMP, a reaction that is essential for maintenance of nucleotide pools.
[58]
AQUA Analysis of Thymidylate Synthase Reveals Localization to be ...
Nov 1, 2008 · ... Thymidylate synthase. ... Although it remains unclear, nuclear localization of TS may be related to its RNA-binding function.
[59]
Thymidylate synthase in situ protein expression and survival in ...
Apr 28, 2008 · Cytoplasmic expression of thymidylate synthase in nonsmall-cell lung cancer is prognostic of survival. Patients with high levels of tumoral ...
[60]
Cytosolic localization and in vitro assembly of human de novo ...
Dec 23, 2020 · De novo thymidylate synthesis is a crucial pathway for normal and cancer cells. Deoxythymidine monophosphate (dTMP) is synthesized by the ...Results · Analysis Of The Dtmp... · Material And Methods
[61]
https://pubmed.ncbi.nlm.nih.gov/15093541/
[62]
Thymidylate synthase as an oncogene: a novel role for an essential ...
TS protein and mRNA levels are elevated in many human cancers, and high TS levels have been correlated with poor prognosis in patients with colorectal, breast,
[63]
FOXM1-induced TYMS upregulation promotes the progression of ...
Jan 29, 2022 · This study suggested that TYMS serves as an oncogene in HCC, and targeting the FOXM1-TYMS axis may help improve the survival of HCC patients.
[64]
Diagnostic and prognostic value of thymidylate synthase expression ...
More specifically, TYMS promotes the synthesis of (dTMP) and plays an essential role in DNA replication and repair. Accordingly, this reaction is a rate‐ ...
[65]
Predictive value of thymidylate synthase expression in resected ...
In the 49 evaluable primary tumours, TS score was high in 53% and low in 47% of patients, while in the 60 metastatic samples TS immunostaining was high in 33% ...
[66]
Thymidylate Synthase Expression as a Predictor of the Prognosis of ...
The intensity of TS staining and the expression of other biomarkers were blindly scored. The five-year survival rates were 63.4% and 85.6% among patients with ...
[67]
High thymidylate synthase gene expression predicts poor outcome ...
Jul 10, 2019 · High TS expression predicts poor outcome after resection of HCC. Molecular markers might be robust predictors of patient outcome after resection ...Missing: fold change TCGA
[68]
Impact of TYMS gene polymorphism on the outcome of methotrexate ...
Jun 7, 2024 · The current work aims to evaluate the association between genetic mutations in thymidylate synthetase (TYMS gene in exon1 and partial regions of ...
[69]
The Association Between Thymidylate Synthase Gene ...
Jun 28, 2023 · We aimed at investigating the relationship between Thymidylate Synthase (TS) gene polymorphisms and ischemic stroke (IS).