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GroEL

GroEL is a molecular chaperonin that serves as an essential molecular machine for protein folding in the bacterium Escherichia coli, where it captures non-native polypeptides and facilitates their correct folding in an ATP-dependent manner with the aid of its cofactor GroES.^[1] Composed of 14 identical subunits arranged into two back-to-back heptameric rings forming a large cylindrical structure approximately 15 nm in height and 14 nm in diameter, GroEL features a central cavity divided into two independent chambers that provide a sequestered environment for substrate proteins.^[2] Each subunit is organized into three distinct domains: the equatorial domain for ATP binding and hydrolysis, the intermediate hinge domain, and the apical domain responsible for substrate binding and interaction with GroES.^[3] The GroEL-GroES system operates through a dynamic cycle that promotes de novo protein folding, particularly under stress conditions, by binding unfolded or partially folded polypeptides via hydrophobic interactions at the apical domain, followed by encapsulation within an enclosed hydrophilic chamber upon GroES binding and ATP hydrolysis to prevent aggregation and allow iterative folding attempts.^[4] This chaperonin is indispensable for E. coli viability at all temperatures, as depletion leads to the accumulation of misfolded proteins and cellular dysfunction, underscoring its role in maintaining proteostasis for approximately 10-15% of the bacterial proteome.^[5] Beyond its canonical function, GroEL exhibits versatility in applications such as protein engineering and has been studied extensively for its allosteric mechanisms, which involve negative cooperativity between rings to ensure efficient substrate release.

Discovery and History

Initial Isolation

The initial isolation of what would later be known as GroEL stemmed from genetic screens conducted in 1973 by Costa Georgopoulos and colleagues at Stanford University, targeting Escherichia coli mutants defective in the propagation of bacteriophage λ at elevated temperatures. These temperature-sensitive mutants were selected by their inability to support λ phage growth at 42°C (non-permissive temperature) while permitting normal growth at 30°C, revealing defects specifically in phage head assembly despite intact DNA replication, tail formation, and cell lysis. The responsible locus was named groE, highlighting its essential role in viral morphogenesis, as lysates from infected groE mutants accumulated aberrant "head-related monsters" similar to those seen in phage gene B or C mutants.^[6] To confirm the specificity of the groE defect, the researchers isolated and mapped suppressor mutations in the λ phage genome, all clustered near gene E (encoding the major head subunit), indicating direct host-phage interactions during assembly. Complementation assays further validated this: wild-type E. coli extracts restored head formation in groE mutant lysates infected with λ, whereas mutant extracts did not, establishing groE as a host factor indispensable for converting phage protein pB (or pC) into the mature head component h3 via proteolytic processing. These findings positioned groE as critical for phage propagation under thermal stress, though its broader cellular role remained unclear at the time.^[6] Biochemical purification of the GroE protein followed in 1979, achieved through a multi-step process involving ammonium sulfate precipitation, DEAE-cellulose chromatography, and gel filtration from overproducing E. coli strains induced by a λ groE+ transducing phage. The purified protein appeared as a soluble, 850 kDa oligomer comprising 14 identical subunits of approximately 60 kDa each, exhibiting a cylindrical morphology with 7-fold rotational symmetry (125 Å diameter, 100 Å height) and weak ATPase activity. This purification confirmed its identity as a host protein required for morphogenesis of multiple phages (λ, T4, T5), distinct from previously misidentified associations with RNA polymerase.^[7] Early studies also linked the groEL product (the larger component of the groE operon, distinguished from groES in subsequent work, with the distinction between the larger groEL and smaller groES components established in 1981 by Tilly et al.^[8]) to the heat shock response, with its synthesis strongly induced upon temperature upshift to 42°C, elevating levels to about 2% of total cellular protein. This identification as a major heat-inducible protein (initially denoted as 64.5 on 2D gels) underscored its dual importance in stress adaptation and phage assembly, though full essentiality for bacterial growth was established later.

Key Milestones

The confirmation of GroEL's induction under heat-shock conditions occurred in 1978, when studies in Escherichia coli revealed a set of proteins, including those later identified as chaperonins, whose synthesis rates transiently increased in response to elevated temperatures.^[9] In the 1980s, the cloning and sequencing of the groEL gene marked a pivotal advancement, enabling detailed analysis of its product. In 1988, researchers led by R. John Ellis cloned and sequenced the groEL gene from E. coli, uncovering its sequence homology to the β-subunit of the Rubisco-binding protein in plant chloroplasts and to the mitochondrial heat-shock protein HSP60.^[10] This homology provided strong evidence supporting the endosymbiotic theory of organelle origins, as it indicated that GroEL-like chaperonins in eukaryotes derived from bacterial ancestors.^[10]^[11] The identification of GroES as GroEL's co-chaperonin partner emerged in the late 1980s through genetic and biochemical approaches. In 1989, in vitro reconstitution experiments demonstrated that GroES, a smaller heptameric protein, cooperates with GroEL and ATP to facilitate the folding of denatured Rubisco, establishing GroES's essential role in the chaperonin system.^[12] A landmark structural insight came in 1994 with the determination of GroEL's crystal structure at 2.8 Å resolution by the groups of Arthur L. Horwich and Paul B. Sigler, in collaboration with Franz-Ulrich Hartl's laboratory. This work revealed GroEL's tetradecameric barrel-shaped architecture, consisting of two stacked heptameric rings, providing the first atomic-level visualization of its oligomeric form and laying the foundation for understanding its mechanistic function.^[13] During the 1990s, early biochemical and genetic studies provided evidence that GroEL's role extended beyond supporting bacteriophage assembly—its initial discovery context—to assisting de novo folding of newly synthesized bacterial proteins. For instance, essentiality assays and in vitro folding experiments showed that GroEL/GroES promotes the productive folding of a subset of cytosolic proteins, preventing aggregation and highlighting its broad cellular importance.^[11] This period also saw indirect recognition of the chaperone field's impact through awards honoring foundational work by Hartl and colleagues on protein folding mechanisms.

Molecular Structure

Overall Architecture

GroEL is a homo-oligomeric protein complex composed of 14 identical subunits, each with a molecular weight of approximately 57 kDa, arranged as two stacked heptameric rings to form a tetradecameric structure with a total molecular mass of about 800 kDa.^[13]^[14] The overall architecture resembles a barrel or double-ring cylinder, exhibiting C7 (seven-fold) rotational symmetry within each ring and back-to-back stacking of the rings mediated by interactions between their equatorial domains.^[13]^[15] The cylindrical structure measures approximately 15 nm in height and 14 nm in outer diameter, with a central cavity of about 6 nm in diameter that provides an enclosed environment for protein folding.^[15]^[16] Each subunit is organized into three distinct domains: the equatorial domain at the base, which forms the inter-ring interface and houses conserved ATP-binding sites; the apical domain at the ends, involved in substrate interactions; and the intermediate domain, which connects the other two.^[13]^[15] The domains are linked by flexible hinges, including glycine-rich regions such as those at hinge 2 (involving residues Gly192, Gly374, and Gly375), which enable conformational flexibility.^[17] At the sequence level, GroEL exhibits evolutionary conservation, sharing approximately 50-60% identity with eukaryotic mitochondrial homologs like Hsp60 and lower but significant similarity with archaeal group II chaperonins, reflecting a common ancestral origin for these molecular chaperones.^[18]^[19]

Domains and Conformational Changes

Each GroEL subunit is composed of three modular domains that enable its dynamic functionality: the equatorial domain at the base, which houses the ATP/ADP binding site and mediates inter-ring contacts through extensive interfaces; the intermediate domain serving as a flexible hinge that connects the equatorial and apical domains, allowing for subunit rotations; and the apical domain at the top, featuring hydrophobic grooves that facilitate initial substrate protein binding.^[20]^[21] Recent structural analyses indicate the disordered C-terminal tails (residues ~525–547) also contribute to substrate binding within the cavity, complementing the apical domain's hydrophobic sites, as observed in interactions with nascent polypeptides.^[22] GroEL exhibits distinct conformational states driven by ligand binding, transitioning from an open configuration where the apical domains expose hydrophobic surfaces to accept unfolded substrates, to a closed state upon GroES capping where the cavity interior becomes hydrophilic to promote folding.^[23] These transitions involve allosteric mechanisms with positive cooperativity within each ring for ATP binding but negative cooperativity between rings, ensuring alternating activity and preventing simultaneous encapsulation in both rings.^[24] Upon ATP binding, the apical domain twists approximately 90° clockwise relative to its unliganded position, while the intermediate domain rotates about 25° toward the equatorial domain; further GroES binding elevates these domains, inducing a 60° upward rotation of the apical domain and forming a dome-shaped enclosure that enlarges the central cavity to roughly 10 nm in height.^[23] Recent structural studies have illuminated these dynamics in greater detail. Cryo-EM analysis in 2023 captured intermediate states during Rubisco substrate progression within GroEL, as seen in the ADP·BeF₃-bound complex (PDB 8BA8), revealing how conformational shifts accommodate folding intermediates without full encapsulation.^[25] Complementing this, in situ cryo-electron tomography in 2024 visualized GroEL distributions in E. coli cytosol, showing asymmetric GroES binding on one ring in 55–70% of complexes under varying growth conditions, with increased asymmetry (up to 70%) during heat stress, highlighting cellular context for ring-specific conformations.^[26] Investigations into thermophilic variants further underscore domain adaptations for stability. In 2024 structural studies of GroEL homologs from thermophilic bacteria like Hydrogenophilus thermoluteolus, the equatorial and apical domains exhibit reinforced interfaces and altered helix angles, conferring enhanced thermal stability with melting temperatures reaching 83°C compared to 67°C for the mesophilic E. coli counterpart, while maintaining ATP-driven conformational flexibility.^[21] Similar enhancements in archaeal Hsp60 homologs, such as from Sulfolobus acidocaldarius, involve domain-specific oligomeric adjustments that support function at high temperatures without compromising hinge-mediated dynamics.^[27]

Chaperone Mechanism

ATP-Dependent Cycle

The ATP-dependent cycle of GroEL operates through a seven-step mechanism that harnesses nucleotide binding and hydrolysis to drive conformational changes essential for substrate protein encapsulation and folding. In the initial step, an unfolded substrate binds to the apical domains of an open cis ring in the GroEL tetradecamer. Subsequent ATP binding to all seven subunits in the cis ring induces positive intra-ring cooperativity, elevating the intermediate and apical domains and tilting the equatorial domains to create a more hydrophilic cavity.^[28] This conformational shift, in the third step, enables GroES to cap the cis ring, displacing the substrate into the enlarged central cavity for isolated folding, a process that proceeds for approximately 10-15 seconds.^[29] ATP hydrolysis then occurs in the fourth step within the cis ring, committing the complex to the folding phase while maintaining the capped state through negative inter-ring cooperativity that inhibits ATP binding to the trans ring.^[28] In the fifth step, the trans ring binds a new set of seven ATP molecules, which triggers allosteric signaling to destabilize the cis ring's GroES cap.^[29] This leads to the sixth step, where GroES and ADP are ejected from the cis ring, allowing release of the folded substrate. Finally, in the seventh step, the emptied cis ring resets to its open conformation, ready for the next substrate, while the trans ring proceeds to become the new cis ring.^[29] Allosteric regulation ensures ordered progression, with positive cooperativity facilitating rapid, concerted ATP binding within a ring (Hill coefficient ≈4) and negative inter-ring cooperativity preventing simultaneous activity of both rings to maintain asymmetry.^[28] The ATP hydrolysis rate is approximately 0.1 s⁻¹ per ring, setting the tempo of the cycle under physiological conditions.^[30] Thermodynamically, each ATP hydrolysis event supplies a free energy change of approximately -30 kJ/mol, which powers cavity expansion from ≈85,000 Å³ to ≈175,000 Å³ and sequesters the substrate in a confined, hydrophilic environment that flattens the folding free energy landscape, reducing kinetic barriers and preventing off-pathway aggregation. The overall reaction for one full cycle per ring is:

\text{GroEL} + 7\text{ATP} + \text{[substrate](/page/Substrate)} \to \text{GroEL} + 7\text{[ADP](/page/ADP)} + 7\text{P}_\text{i} + \text{folded [substrate](/page/Substrate)}

Recent in vivo quantification using cryo-electron tomography (cryo-ET) in E. coli cells has confirmed that asymmetric states predominate, with 55-70% of GroEL complexes featuring GroES bound to one ring across various growth conditions, underscoring the physiological relevance of the asymmetric cycle.^[31]

Substrate Binding and Folding

GroEL recognizes non-native substrate proteins primarily through the exposure of hydrophobic residues on these unfolded or partially folded polypeptides, which interact with complementary hydrophobic grooves located in the apical domains of the GroEL cylinder.^[32] This binding is promiscuous yet selective for aggregation-prone states, preventing premature intermolecular associations in the crowded cellular environment.^[33] Notable obligate clients include enzymes such as ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) and glutamine synthetase, which require GroEL assistance for efficient folding. Proteomics studies have identified over 250 GroEL-dependent proteins in Escherichia coli, representing approximately 10% of the cytosolic proteome and highlighting GroEL's broad role in folding a significant fraction of newly synthesized proteins. Recent in vivo analyses from 2023 confirm this repertoire, emphasizing that these clients often exhibit high aggregation propensity and rely on GroEL to maintain proteostasis.^[34] Furthermore, GroEL contributes to preventing amyloid formation by sequestering hydrophobic segments of amyloidogenic peptides, such as amyloid-β, thereby inhibiting fibril nucleation and elongation.^[35] Upon ATP hydrolysis and GroES capping, the substrate is encapsulated within the hydrophilic, enclosed folding chamber of GroEL, which isolates it from the cytosol and shields it from aggregation with other non-native molecules.^[36] This anoxic-like, sequestered space promotes unimpeded folding by providing a low-volume, solvated environment that favors intramolecular interactions over intermolecular ones. Recent cryo-EM studies as of November 2025 show that GroEL can actively unfold nascent protein chains to facilitate encapsulation. For recalcitrant substrates, GroEL facilitates iterative binding and release through multiple cycles, often many for proteins like Rubisco, allowing repeated attempts at productive folding without permanent entrapment.^[37] Cryo-electron microscopy structures from 2023 reveal detailed snapshots of substrate progression within the GroEL cycle, particularly for the Rubisco large subunit, demonstrating initial threading into the apical domain followed by compaction and advancement through asymmetric intermediate states toward encapsulation.^[1] These visualizations show the substrate transitioning from extended, non-native conformations bound across rings to more compact, native-like densities within the cis chamber, underscoring the dynamic nature of chaperonin-assisted maturation. For many clients, GroEL achieves folding yields of 50–90%, varying by substrate complexity; failures typically result in re-binding for another cycle or targeting for proteasomal degradation to avert cellular toxicity.

Biological Functions

Protein Folding in Bacteria

GroEL plays a central role in maintaining protein homeostasis in bacteria, particularly by assisting the post-translational folding of newly synthesized polypeptides in the crowded cytoplasmic environment. In Escherichia coli, GroEL is essential for cellular viability, as it facilitates the folding of approximately 10–15% of the proteome, including many essential proteins; null mutants are lethal, underscoring its indispensable function under normal growth conditions.^[38] This folding activity prevents aggregation of aggregation-prone substrates, ensuring proper cellular function without relying on stress-induced upregulation. Localized exclusively in the cytoplasm of E. coli, GroEL constitutes approximately 1% of the total soluble protein under standard conditions, providing sufficient capacity to handle the flux of nascent chains emerging from ribosomes.^[39] Its high abundance reflects the constant demand for chaperone assistance in de novo protein synthesis. Furthermore, GroEL integrates with the translational machinery by binding nascent polypeptides in close proximity to the ribosome, enabling co-translational folding support that stabilizes emerging domains and reduces premature misfolding risks. Recent studies as of 2025 have shown that the GroEL/GroES system can unfold and encapsulate nascent proteins directly emerging from the ribosome, further supporting its role in co-translational folding.^[22]^[40]^[41] Recent in vivo interactome studies have illuminated GroEL's client repertoire, revealing a bias toward metabolic enzymes critical for bacterial physiology. For instance, approximately 70% of obligate GroEL-dependent substrates (Class IV clients) are involved in metabolism, including central pathways such as those for amino acid and heme biosynthesis; examples include aspartate-semialdehyde dehydrogenase (ASD) in lysine production and HemB in heme synthesis, both essential for viability.^[42] These findings highlight how GroEL ensures the folding of structurally challenging proteins with TIM-barrel folds, which are prevalent in metabolic catalysis. While the core ATP-dependent encapsulation mechanism drives this process, as detailed elsewhere, the in vivo context emphasizes GroEL's selective role in buffering metabolic flux. Evolutionarily, GroEL is highly conserved across Proteobacteria, reflecting its ancient and fundamental contribution to bacterial proteostasis in this phylum. In contrast, archaea predominantly utilize group II chaperonins for analogous functions, with studies demonstrating that a group II chaperonin from Methanococcus maripaludis can partially replace GroEL in E. coli, restoring limited viability and suggesting functional divergence between the two chaperonin groups over evolutionary time.^[43]^[44] This partial substitutability underscores GroEL's specialized adaptations for bacterial cytoplasmic folding demands.

Roles in Stress Response

In Escherichia coli, GroEL expression is strongly upregulated during heat shock through the sigma-32 (σ³²)-dependent promoter, which recognizes specific promoter elements in the groESL operon to initiate transcription of heat shock genes.^[45] Upon a temperature shift from 30°C to 42°C, the rate of GroEL synthesis increases dramatically, up to approximately 50-fold in the initial phase of the response, before adapting to a sustained elevation of 2- to 3-fold in steady-state protein levels. This induction is mediated by stabilization and increased translation of σ³², allowing rapid accumulation of GroEL to counter protein misfolding caused by thermal stress.^[46] GroEL plays a critical protective role against protein aggregation induced by various environmental stresses, including heat, oxidative, and osmotic challenges, by binding non-native polypeptides and facilitating their refolding in an ATP-dependent manner with its co-chaperone GroES.^[47] In E. coli cells depleted of GroEL, sensitivity to oxidative damage (e.g., from hydrogen peroxide) and osmotic stress (e.g., high salt) is markedly heightened, as aggregated proteins accumulate and impair cellular viability.^[47] This refolding activity helps maintain proteostasis, preventing irreversible aggregation and supporting cell survival during acute stress episodes.^[48] In pathogenic bacteria, GroEL contributes to enhanced survival within the host environment, particularly during latency phases. For instance, in Mycobacterium tuberculosis, the homolog GroEL1 is upregulated under low-oxygen and oxidative stress conditions mimicking latency in granulomas, aiding protein folding to promote long-term persistence and resistance to host immune pressures.^[49] Recent studies have revealed multifaceted "Swiss-knife" activities of GroEL beyond canonical chaperoning, including non-chaperone functions such as modulating enzyme activities and interacting with diverse substrates under stress to fine-tune metabolic responses.^[50] During bacteriophage T4 infection, GroEL and GroES (or the phage-encoded gp31 homolog) are essential for the proper folding of major capsid proteins gp23 and gp24, enabling efficient head morphogenesis and viral assembly. Mutants lacking functional GroEL/GroES fail to produce viable T4 virions, underscoring GroEL's role in stress-like conditions imposed by rapid viral protein synthesis.^[51]

Interactions and Partners

With GroES

GroES is a co-chaperonin consisting of seven 10 kDa subunits that assemble into a dome-shaped heptameric cap, which binds to the apical domains of one GroEL ring following ATP hydrolysis to seal the central folding cavity and create a hydrophilic environment for substrate protein isolation.^[52] This binding occurs after ATP binding to the cis ring induces conformational changes in the apical domains, expanding the cavity volume to approximately 85,000 Å³ and preventing aggregation by sequestering the non-native substrate.^[25] The interaction is transient, forming the GroEL:GroES:ATP complex, where GroES's mobile loops insert into hydrophobic grooves on GroEL's apical domains to stabilize the closed state.^[21] The mechanism involves ATP-driven allostery: binding of ATP to the trans ring ejects GroES from the cis ring, releasing the folded or partially folded substrate and resetting the cycle for new substrate binding.^[25] This ejection is powered by negative allostery, where trans-ATP binding propagates conformational signals across the equatorial interface, causing 90° rotations in the cis apical domains to dislodge GroES.^[52] Recent cryo-EM studies from 2021 to 2024 have revealed asymmetric ADP-bound states of the GroEL-GroES complex, such as bullet-shaped conformations with one ring capped and the other open, highlighting inter-ring asymmetry essential for coordinated cycling.^[52]^[21] These structures also show that GroES mimics substrate binding to apical domains, activating allosteric responses that mimic full substrate encapsulation for regulatory purposes.^[25] GroES is functionally necessary for efficient protein folding, as GroEL alone exhibits significantly reduced folding yields for many substrates due to the lack of cavity enclosure, which allows aggregation; for instance, encapsulation by GroES can increase folding efficiency by over 10-fold for certain proteins like mitochondrial malate dehydrogenase.^[53] In bacteriophage T4, GroES is substituted by the phage-encoded gp31, a structural homolog that forms a larger cavity to accommodate the folding of the major capsid protein gp23, demonstrating the co-chaperonin's critical role in specialized folding pathways.^[54] This partnership is conserved across organisms, with eukaryotic homologs such as mitochondrial and chloroplast Cpn10 (also known as chaperonin 10) performing analogous functions with group I chaperonins like Hsp60 to assist in organellar protein biogenesis.^[55]

With Other Proteins

GroEL interacts with a diverse array of client proteins in Escherichia coli, estimated at approximately 300 potential substrates that require its assistance for proper folding, including well-studied examples such as dihydrofolate reductase (DHFR) and malate dehydrogenase (MDH).^[42]^[56] These clients typically bind to GroEL in their non-native states, where exposed hydrophobic regions on the substrate engage with complementary hydrophobic patches on the inner surface of GroEL's apical domains, facilitating capture with high affinity (association rate constants often exceeding 10^7 M^{-1} s^{-1}).^[57]^[58] This binding prevents aggregation and positions the substrate for subsequent chaperonin-mediated folding cycles. In addition to direct substrate interactions, GroEL engages in regulatory partnerships with other chaperones, notably DnaK (Hsp70), which acts upstream in the folding pathway by stabilizing early polypeptide intermediates before handing them over to GroEL for encapsulation and further maturation.^[59] This sequential cooperation ensures efficient triage of nascent or stress-denatured proteins, with DnaK-DnaJ complexes delivering substrates to GroEL upon ATP hydrolysis to mitigate kinetic traps in folding.^[60] Phage-specific adaptations highlight GroEL's versatility in interactions beyond bacterial hosts; in bacteriophage T4 infection, the viral protein gp31 serves as a specialized co-chaperonin that replaces GroES, forming a GroEL-gp31 complex essential for folding the major capsid protein gp23 and other late-stage assembly components.^[61] Furthermore, GroEL assists in the folding of T4 tail fiber proteins, such as those in the baseplate and fiber assembly, by binding their unfolded forms to prevent misassembly during virion morphogenesis.^[62] Recent proteomic studies have refined the identification of obligate GroEL clients—proteins that depend on GroEL for viability—revealing a core set of around 80-100 in E. coli, including critical regulators like the heat shock sigma factor σ^{32} (RpoH), which requires GroEL-mediated stabilization to activate stress response genes.^[42]^[63] GroEL also participates in cross-talk with cellular proteases, such as Lon and ClpXP, to manage irreparable substrates; if folding attempts fail, bound proteins may be released or transferred for ubiquitin-independent degradation, preventing toxic accumulation of aggregates while prioritizing salvageable clients.^[64]^[65]

Synthesis and Regulation

Gene Expression

In Escherichia coli, the groEL gene is part of the rpoH regulon, which encodes the alternative sigma factor σ³² responsible for directing RNA polymerase to heat shock promoters.^[66] The groEL promoter features specific σ³² binding sites, including conserved -35 (TTGAAA) and -10 (CCCCATNT) regions located upstream of the transcription start site, enabling σ³²-dependent activation.^[66] Under normal growth conditions, groEL transcription occurs at a basal level, contributing to the steady-state production of chaperonin essential for routine protein folding.^[46] Upon heat shock or other stresses, groEL expression is rapidly induced, with mRNA levels increasing up to 20-fold due to stabilization of σ³² through sequestration by the DnaK-DnaJ-GrpE chaperone system, which releases σ³² when overwhelmed by misfolded proteins.^[46]^[67] While HtpG, another chaperone, contributes to higher-temperature stress sensing and indirectly supports the heat shock response, the primary transcriptional induction of groEL relies on the DnaK-mediated derepression of σ³².^[68] Post-transcriptionally, heat shock enhances groEL mRNA stability, thereby amplifying protein synthesis during stress.^[69] Translation of groEL mRNA is coupled to nascent polypeptide folding, with GroEL itself binding co-translationally to emerging proteins via interactions with ribosomes, preventing aggregation and ensuring efficient chaperone function.^[70] The groEL gene is highly conserved as a single-copy locus across bacteria, reflecting its essential role in prokaryotic protein homeostasis.^[71] In eukaryotes, the homolog is nuclear-encoded by the HSPD1 gene, which produces the mitochondrial HSP60 chaperonin.^[72] Recent studies have revealed epigenetic modulation of groEL (as part of the groESL operon) in bacterial pathogens, such as Vibrio cholerae, where deficiency in the DNA methyltransferase VchM leads to hypomethylation of promoter regions, resulting in upregulated expression that enhances tolerance to antibiotics and supports virulence under stress conditions.^[73]

Assembly Process

The folding of individual GroEL monomers occurs independently and autocatalytically, as the polypeptide sequence contains all necessary information for achieving a compact, assembly-competent conformation without reliance on other chaperones or the oligomeric GroEL itself.^[74] This process can be recapitulated in vitro from fully denatured states, such as after exposure to 8 M urea, yielding monomers with structured equatorial, intermediate, and apical domains that are primed for oligomerization.^[74] In vivo, the assembly of these folded monomers into the functional tetradecameric oligomer is ATP-dependent, requiring Mg-ATP to facilitate subunit interactions and stabilize the structure under physiological conditions.^[75] The process begins with the formation of intra-ring contacts primarily involving the equatorial domains, which serve as the foundational scaffold for ring assembly, followed by incorporation of apical and intermediate domain interactions to complete the heptameric rings and enable inter-ring stacking.^[74] Initial monomer association may be assisted by the chaperone DnaK, which helps prevent aggregation of nascent polypeptides during early stages, though GroEL's self-assembly proceeds robustly thereafter. Kinetically, single-ring (heptameric) intermediates form rapidly, with assembly progressing to full tetradecamer stabilization on the order of minutes under optimal conditions, such as in the presence of approximately 1 mM ATP.^[76] Heptameric rings represent a key transient state, detectable during reassembly, before the second ring stacks via equatorial contacts to yield the mature cylinder.^[75] In vitro, assembly is induced by Mg-ATP (minimal ~0.1 mM) combined with salts like 0.4 M ammonium sulfate or 2 M NaCl, which enhance subunit affinity and yield up to 90% functional oligomers, while nucleotide binding—rather than hydrolysis—is essential for conformational rearrangement.^[75] Mutants, such as single-ring variants (e.g., SR1), exhibit altered kinetics with monoexponential assembly profiles and reduced stability, leading to imbalanced ring formation and incomplete tetradecamers.^[75]

Medical and Biotechnological Relevance

Role in Bacterial Pathogenesis and Antibiotics

In bacterial pathogens, GroEL plays a critical role in survival and virulence, particularly under host-imposed stresses. In Mycobacterium tuberculosis, the GroEL homolog GroEL1 (Cpn60.1) is upregulated during heat shock, oxidative stress, and infection, enabling the bacterium to maintain proteostasis and persist within macrophages. This upregulation supports mycolic acid biosynthesis essential for cell wall integrity and virulence, with GroEL1 mutants exhibiting attenuated persistence and reduced inflammatory responses in animal models. Similarly, in Porphyromonas gingivalis, a key periodontal pathogen, GroEL promotes chronic inflammation by inducing M1 macrophage polarization, which exacerbates abdominal aortic aneurysm (AAA) formation through increased matrix metalloproteinase-2 (MMP-2) activity via SUMOylation in vascular smooth muscle cells.^[77]^[78] As a virulence factor, GroEL directly interacts with host cells to modulate immune responses. It induces pro-inflammatory cytokine production, such as TNF-α, IL-6, and IL-8, by activating the NF-κB pathway and NLRP3 inflammasome in macrophages and epithelial cells.^[79] In oral infections, P. gingivalis GroEL accelerates tumor angiogenesis by upregulating microRNAs (e.g., miR-1248 and miR-1291) in endothelial progenitor cells, which downregulate thrombomodulin and enhance neovascularization, promoting tumor growth and metastasis in mouse models. These mechanisms highlight GroEL's contribution to pathogen-host crosstalk, amplifying inflammation and tissue damage without direct cytotoxicity.^[80] The essentiality of GroEL/GroES for bacterial viability positions it as a promising antibiotic target, particularly for multidrug-resistant strains. Small-molecule inhibitors that occupy the ATP-binding site, such as bis-sulfonamido-2-phenylbenzoxazoles, disrupt chaperonin function and exhibit potent bactericidal activity against Gram-negative pathogens like Escherichia coli and Pseudomonas aeruginosa at low micromolar concentrations, with minimal eukaryotic toxicity. Recent advances include GroEL modulators that reduce biofilm formation in Staphylococcus aureus by impairing initial attachment and matrix production, achieving up to 80% inhibition in vitro.^[81]^[82]^[83] For tuberculosis, novel GroEL inhibitors show efficacy against replicating M. tuberculosis and persisters, advancing as preclinical candidates with synergy potential alongside existing regimens.^[81]^[84]

Homologs in Eukaryotes and Diseases

In eukaryotes, the primary homolog of the bacterial chaperonin GroEL is heat shock protein 60 (HSP60), also referred to as Cpn60, which resides predominantly in the mitochondrial matrix where it assists in the folding of nuclear-encoded proteins imported into the organelle. Unlike GroEL, which is encoded by the bacterial genome and functions in the cytoplasm, HSP60 is nuclear-encoded, featuring a 26-amino-acid mitochondrial import signal that directs its translocation to mitochondria upon synthesis in the cytosol. Structurally, HSP60 forms a conserved tetradecameric double-ring complex similar to GroEL, but its assembly into double rings requires ATP, and it exhibits no negative inter-ring cooperativity in ATP binding, allowing both rings to engage nucleotides simultaneously—a deviation from GroEL's asymmetric mechanism. Additionally, HSP60 pairs with the co-chaperone Hsp10 (Cpn10) rather than GroES, enabling substrate folding in a nucleotide-dependent manner within the mitochondrial environment. Under cellular stress conditions such as hypoxia, oxidative damage, or apoptosis, a portion of HSP60 (approximately 15-20%) relocates from mitochondria to the cytoplasm, where it participates in non-canonical roles including cell signaling, inflammation modulation via TLR4, and protection against protein aggregation. This translocation is mediated by stress-induced disassembly of mitochondrial complexes and has been observed in various cell types, including cardiomyocytes and hepatocytes, potentially contributing to adaptive responses but also pathological signaling. Functionally, HSP60 not only facilitates the biogenesis of mitochondrial proteins but also supports mitochondrial DNA replication by binding single-stranded DNA and stabilizing replication intermediates, underscoring its broader role in organelle maintenance distinct from GroEL's cytosolic protein folding in bacteria. HSP60 dysregulation is implicated in several human diseases, particularly through its extra-mitochondrial activities. In autoimmunity, such as rheumatoid arthritis, molecular mimicry arises from sequence homology (over 50%) between human HSP60 and bacterial HSP65, leading to cross-reactive T-cell responses that promote synovial inflammation and cytokine production like TNF-α and IFN-γ; anti-HSP60 autoantibodies are elevated in affected patients, exacerbating joint pathology. In cancer, HSP60 overexpression serves as a prognostic biomarker: in colorectal cancer, high levels correlate with improved event-free and disease-specific survival (HR 1.42-1.69 for low vs. high expression), particularly in advanced TNM stages III/IV, potentially reflecting cytoprotective effects against tumor stress, as shown in 2023 analyses of patient cohorts. Conversely, in ovarian cancer, elevated HSP60 expression is associated with aggressive features like advanced FIGO stage, lymph node metastasis, and poorer overall survival (P=0.004), based on 2025 studies of over 260 cases, highlighting its role in promoting proliferation and lipid metabolism dysregulation. Recent meta-analyses and cohort studies from 2022-2025 reinforce HSP60's dual context-dependent functions in oncogenesis, with cytoplasmic relocation enhancing tumor cell survival. Emerging post-2020 research links HSP60 to neurodegeneration and metabolic disorders. In Alzheimer's disease, mitochondrial HSP60 prevents amyloid-β aggregation by altering oligomer conformations and maintaining proteostasis, with upregulation observed in affected brain regions to counter mitochondrial dysfunction; studies from 2023 suggest therapeutic potential in enhancing HSP60 to mitigate Aβ toxicity and tau pathology. Similarly, in diabetes—particularly type 1—HSP60 expression on β-cell surfaces under endoplasmic reticulum or mitochondrial stress acts as an autoantigen, triggering immune-mediated destruction via MHC presentation of modified peptides; post-2020 investigations, including 2021 reviews, show that stress-induced HSP60 relocation in β-cells promotes inflammation and insulin resistance, while peptide therapies like P277 shift responses toward tolerance, preserving β-cell function. These associations underscore HSP60's translocation as a key factor in disease progression, differing from GroEL's strictly prokaryotic confinement.

Biotechnological Applications

GroEL has found applications in biotechnology due to its robust protein-folding capabilities. It is widely used in protein engineering to assist the refolding and stabilization of recombinant proteins expressed in bacterial systems, improving yields in industrial production of enzymes and therapeutics. For instance, immobilized GroEL columns facilitate ATP-dependent folding of denatured proteins in vitro. Additionally, GroEL's cage-like structure has been exploited in nanotechnology for encapsulating and delivering biomolecules, and in vaccine development as an adjuvant to enhance immune responses. As of 2025, engineered variants of GroEL are being explored for sustainable biocatalysis and synthetic biology applications.^[85]^[86]

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https://www.nature.com/articles/333330a0
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The crystal structure of the bacterial chaperonln GroEL at 2.8 Å
Oct 13, 1994 · The crystal structure of Escherichia coli GroEL shows a porous cylinder of 14 subunits made of two nearly 7-fold rotationally symmetrical rings stacked back-to ...
[12]
Structure of GroEL in Complex with an Early Folding Intermediate of ...
GroEL is a large homo-oligomeric barrel structure formed by two rings each one comprising 7 subunits of a 57-kDa polypeptide chain.
[13]
https://www.nature.com/articles/371578a0
[14]
A polypeptide bound by the chaperonin groEL is localized ... - PNAS
groEL. Allowing for a cylindrical cavity within groEL %6.0 nm in diameter and-7.0 nm in height, and assuming a specific density of 2.3 A3 per Da based on ...
[15]
Gly192 at hinge 2 site in the chaperonin GroEL plays a pivotal role ...
The 'hinge 2' site of GroEL contains three glycine residues, Gly192, Gly374, and Gly375, connecting the apical domain and the intermediate domain.
[16]
The C‐terminal tails of GroEL and its mitochondrial and chloroplastic ...
Oct 29, 2025 · GroEL homologs are present in mitochondria (called Hsp60, sequence identity versus GroEL ~60%) with a similar structure (Gomez‐Llorente et ...
[17]
Conserved and divergent chaperoning effects of Hsp60/10 ... - PNAS
Apr 29, 2022 · Intriguingly, eukaryotic GroEL/ES homologs have the lowest negative-charge density in the chaperonin cavity. This prompted us to investigate if ...
[18]
Crystal structure of a GroEL-ADP complex in the relaxed allosteric ...
As expected, the overall basic architecture of GroEL is preserved. The 14 subunits are arranged into two heptameric rings and stacked back to back (Fig. 3A).
[19]
https://www.pnas.org/doi/10.1073/pnas.2118465119
[20]
Structure and Allostery of the Chaperonin GroEL - PubMed
May 13, 2013 · Chaperonins are intricate allosteric machines formed of two back-to-back, stacked rings of subunits presenting end cavities lined with hydrophobic binding ...
[21]
ATP-Bound States of GroEL Captured by Cryo-Electron Microscopy
Dec 28, 2001 · Of particular interest are the ring assemblies known as chaperonins, the best characterized of which is the GroEL/GroES system in E. coli Hartl ...<|control11|><|separator|>
[22]
Structural basis of substrate progression through the bacterial ...
Dec 8, 2023 · We built and refined the model into the cryoEM maps using the crystal structures of apo GroEL (PDB code: 1SS8) and GroEL-GroES (PDB: 1SVT) (Fig.
[23]
Visualizing chaperonin function in situ by cryo-electron tomography
Aug 21, 2024 · Here we visualized chaperonin complexes in their natural cellular environment using cryo-electron tomography.
[24]
Functional diversity in archaeal Hsp60: a molecular mosaic of Group ...
Jun 26, 2024 · This study delves into the intricacies of Hsp60 complexes in S. acidocaldarius, uncovering their ability to form oligomeric structures in the presence of ATP.
[25]
The allosteric mechanism of the chaperonin GroEL - PubMed Central
The allosteric mechanism (positive cooperativity within a ring, negative cooperativity between rings) is shown to be based on coupled tertiary structural ...Missing: regulation | Show results with:regulation
[26]
GroEL/GroES cycling: ATP binds to an open ring before ... - PNAS
The GroEL/GroES reaction cycle involves steps of ATP and polypeptide binding to an open GroEL ring before the GroES encapsulation step that triggers productive ...
[27]
The versatile mutational “repertoire” of Escherichia coli GroEL, a ...
The subunit structure of GroEL is composed of three clearly defined domains; each of which provides a distinct functional role in the mechanism outlined above ( ...Introduction · Quaternary Structure And... · Groel Sr-1 (weissman Et Al...
[28]
Visualizing chaperonin function in situ by cryo-electron tomography
Aug 21, 2024 · We find that, under various growth conditions, around 55–70% of GroEL binds GroES asymmetrically on one ring, with the remainder populating ...
[29]
Mechanism of substrate recognition by the chaperonin GroEL
According to this model, binding takes place preferentially between the hydrophobic residues in the apical domains of GroEL and the hydrophobic faces exposed by ...
[30]
Substrate polypeptide presents a load on the apical domains of the ...
In the binding state, the open polypeptide-accepting form of a GroEL ring exposes a hydrophobic surface at its apical cavity aspect (20, 21), and this surface ...
[31]
In vivo client proteins of the chaperonin GroEL-GroES provide ...
Feb 10, 2023 · This review summarizes the progress on the in vivo GroE client repertoire and its features, mainly for Escherichia coli GroE.
[32]
Probing the mechanism of inhibition of amyloid-β(1–42) - PNAS
Dec 3, 2018 · Here, we show that the bacterial homolog GroEL (51% sequence identity) reduces the neurotoxic effects of amyloid-β(1–42) (Aβ42) on human neural ...
[33]
The GroEL/GroES cis cavity as a passive anti-aggregation device
The GroEL/GroES chaperonin folding chamber is an encapsulated space of approximately 65 A diameter with a hydrophilic wall, inside of which many cellular ...Missing: anoxic | Show results with:anoxic
[34]
Iterative annealing mechanism explains the functions of the GroEL ...
GroEL is an all‐purpose stochastic machine that assists misfolded substrate proteins to fold. The RNA chaperones such as CYT‐19, which are ATP‐consuming enzymes ...Missing: milestones | Show results with:milestones
[35]
GroEL actively stimulates folding of the endogenous substrate ...
Jun 30, 2017 · GroEL is a homo-oligomer of 14, 57 kDa subunits, that is arranged in two, seven membered rings stacked back-to-back. Each ring contains a ...
[36]
Molecular Microbiology - Wiley Online Library
Jun 23, 2023 · GroEL and GroES assist the folding of about 10–15% of the E. coli proteome, including several essential proteins, and hence are essential for ...2 Results · 3 Discussion · 5 Materials And Methods
[37]
Export is the default pathway for soluble unfolded polypeptides that ...
For example, GroEL concentrations in E. coli cells are sufficient to fold about 5% of total cell protein [8]; therefore, GroEL may rapidly become saturated ...
[38]
Co-translational binding of GroEL to nascent polypeptides ... - PubMed
GroEL holds the nascent chain on the ribosome in a polypeptide length-dependent manner and post-translationally encapsulates the polypeptide using the GroES cap ...Missing: proximity | Show results with:proximity
[39]
In vivo client proteins of the chaperonin GroEL-GroES ... - Frontiers
Feb 9, 2023 · GroE is a heat shock protein and the only indispensable chaperone for bacterial viability (Fayet et al., 1989), except for some species of ...Introduction · In vivo clients of GroEL-GroES · Determinants that define the...<|control11|><|separator|>
[40]
Whole Proteome Clustering of 2307 Proteobacterial Genomes ...
Our analysis shows that GroEL is one of the most conserved proteins among Proteobacteria. All GroEL sequences are found in just one cluster (Cl. 3128) ...
[41]
Replacement of GroEL in Escherichia coli by the Group II ...
We show here that a group II chaperonin from a methanogenic archaeon can partially substitute for the essential group I chaperonin GroEL in E. coli.
[42]
Regulation of heat-shock genes in bacteria: from signal sensing to ...
Apr 11, 2017 · It is worth mentioning that the names groEL and groES should be used for Escherichia coli genes only, because this nomenclature was adopted ...INTRODUCTION · REGULATORY MECHANISMS... · MECHANISMS OF HEAT...<|control11|><|separator|>
[43]
A chaperone network controls the heat shock response in E. coli
Our initial evidence that GroEL/S was a regulator of the heat shock response ... protein folding for both GroEL-dependent and DnaK-dependent proteins.
[44]
GroES/GroEL and DnaK/DnaJ Have Distinct Roles in Stress ... - NIH
crescentus cells with GroES/EL depleted are quite resistant to heat shock, ethanol, and freezing but are sensitive to oxidative, saline, and osmotic stresses.
[45]
Towards understanding the biological function of the unusual ...
Our work is therefore suggestive of an important role of Cpn60.1 (GroEL1) for survival under low aeration by affecting the expression of genes known for ...
[46]
https://genesdev.cshlp.org/content/18/22/2812.full
[47]
Novel cryo-EM structure of an ADP-bound GroEL–GroES complex
Sep 14, 2021 · The apical and intermediate domains of GroEL subunits form the walls of the large central cavity, while the equatorial domains form its deck. ...
[48]
Essential role of the chaperonin folding compartment in vivo - PMC
These results differ from recent findings by Farr et al (2007), who reported a 70–90% reduction in the binding efficiency for a GroEL mutant with 4[GGM]4 tails.
[49]
Structural Adaptations in the Specialized Bacteriophage T4 Co ...
The Gp31 protein from bacteriophage T4 functionally substitutes for the bacterial co-chaperonin GroES in assisted protein folding reactions both in vitro ...Missing: necessity | Show results with:necessity
[50]
Identification and functional analysis of chaperonin 10, the groES ...
In Escherichia coli, these two chaperonins are also termed groEL and groES. We have used a functional assay to identify the groES homolog cpn10 in yeast ...
[51]
GroEL-mediated folding of structurally homologous dihydrofolate ...
May 2, 1997 · We show that GroEL binds the unfolded conformation of each DHFR with second order rate constants greater than 3 x 10(7) M(-1)s(-1) at 22 degrees ...Missing: client examples malate
[52]
Probing the transient dark state of substrate binding to GroEL by ...
GroEL initially binds substrate proteins on exposed hydrophobic patches facing the inside of the cavity. Through a series of ATP-driven conformational ...
[53]
GroEL Recognizes an Amphipathic Helix and Binds to the ...
The model shows that Val6, Phe9, and Leu10 project their hydrophobic side chains into the groove of the apical domain. In this model, Trp7 is exposed; binding ...
[54]
Successive action of DnaK, DnaJ and GroEL along the pathway of ...
Apr 23, 1992 · DnaK (heat-shock protein 70) recognizes the folding poly-peptide as an extended chain and cooperates with DnaJ in stabilizing an intermediate conformational ...Missing: interaction handover
[55]
Cooperation of GroEL/GroES and DnaK/DnaJ heat shock proteins in ...
Overproduction of either GroEL and GroES or DnaK and DnaJ prevents aggregation. If expressed together, the four hsp are effective at physiological ...Missing: handover | Show results with:handover
[56]
Bacteriophage T4 encodes a co-chaperonin that can substitute for ...
Apr 14, 1994 · Bacteriophage T4 is unusual in that it encodes a specialized protein (Gp31) that is thought to interact with the host GroEL and to be absolutely required for ...
[57]
Molecular Biology of Bacteriophage T4 - Part III - ASM Journals
ROLE OF Gp31 DURING T4 DEVELOPMENT. Bacteriophage T4 mutants, called ϵ, that are able to form plaques on restrictive groEL mutant hosts can readily be ...
[58]
GroEL to DnaK chaperone network behind the stability modulation ...
Dec 21, 2015 · This study provides experimental evidence for the first time in favor of the in vivo physical association of σ 32 with GroEL and DnaK chaperones.
[59]
A molecular device for the redox quality control of GroEL/ES substrates
Each Hsp60 subunit consists of an ATP-binding equatorial domain, an intermediate domain, and an apical substrate-binding domain (Figure S1A). Hsp60 ...
[60]
GroEL actively stimulates folding of the endogenous substrate ...
Consistent with our previous RuBisCO observations, PepQ bound to a full-length GroEL ring was degraded ~2.5-fold faster than PepQ bound to the Δ526 ring (Fig.
[61]
Regulon and promoter analysis of the E. coli heat-shock factor, σ32 ...
The heat-shock response (HSR), was first identified by Ritossa (1963), who showed that exposure to heat lead to transient changes in the puffing pattern of ...
[62]
A chaperone network controls the heat shock response in E. coli
The heat shock response controls levels of chaperones and proteases to ensure a proper cellular environment for protein folding.
[63]
Role of the heat shock response in stability of mRNA in Escherichia ...
The heat shock response in Escherichia coli involves extensive induction of the heat shock proteins, with the concomitant suppression of the synthesis of ...
[64]
Co-translational Binding of GroEL to Nascent Polypeptides Is ...
We previously found an association of GroES with the translation complex in growing E. coli (29). Now we can understand that this GroES interaction in vivo ...
[65]
Chaperonin genes on the rise: new divergent classes and intense ...
Mar 1, 2010 · The Group I chaperonins are typically formed by the products of a single gene (groEL in bacteria; hsp60/cpn60 in mitochondria) assembled into a ...<|separator|>
[66]
HSPD1 (Heat Shock 60kDa Protein 1) - ResearchGate
Oct 7, 2025 · when it is pathogenic. Keywords. HSPD1, HSP60, Cpn60, GroEL ... Given that prokaryotic (bacterial) and eukaryotic (for instance, human) HSP60 ...
[67]
https://academic.oup.com/book/51141/chapter/421975899
[68]
https://pmc.ncbi.nlm.nih.gov/articles/PMC528900/
[69]
https://pmc.ncbi.nlm.nih.gov/articles/PMC206150/
[70]
https://www.sciencedirect.com/science/article/pii/S0021925819477004
[71]
A Mycobacterium tuberculosis Mutant Lacking the groEL ... - NIH
Mycobacterium tuberculosis WhiB3 interacts with RpoV to affect host survival but is dispensable for in vivo growth. Proc. Natl. Acad. Sci. USA 993147-3152 ...
[72]
Porphyromonas gingivalis GroEL Accelerates Abdominal Aortic ...
Aug 12, 2025 · These findings suggest that P. gingivalis-derived GroEL plays a pathogenic role in AAA by modulating macrophage polarization toward a pro- ...
[73]
Characterization of Molecular Chaperone GroEL as a Potential ...
Sep 12, 2023 · The recombinant GroEL protein could activate the NF-κB signaling pathway to release more pro-inflammatory cytokines (TNF-α, IL-6 and IL-8), ...
[74]
GroEL triggers NLRP3 inflammasome activation - PMC - NIH
GroEL is an important virulence factor implicated in bacteria-host interaction and may be involved in the progression of periodontitis. P. gingivalis GroEL ...
[75]
GroEL of Porphyromonas gingivalis‐induced microRNAs accelerate ...
May 15, 2023 · We found that GroEL in Porphyromonas gingivalis accelerated tumor growth and increased mortality in tumor-bearing mice; GroEL promoted proangiogenic function.
[76]
Exploring Novel Antibiotics by Targeting the GroEL/GroES ...
Dec 11, 2024 · The GroEL/ES system has been confirmed as one of the key molecular chaperones for bacterial viability. Recent data have revealed the antibacterial activities ...Missing: milestones | Show results with:milestones
[77]
Bis-sulfonamido-2-phenylbenzoxazoles Validate the GroES/EL ...
These inhibitors exhibited antibiotic effects from the low-μM to mid-nM range against a panel of Gram-positive and Gram-negative bacteria [50], mycobacteria [53] ...
[78]
Hydroxybiphenylamide GroEL/ES inhibitors are potent antibacterials ...
We found that all of the compound 1 analogs tested, and vancomycin, were able to prevent S. aureus from forming biofilms with EC50 values nearly equipotent to ...Missing: modulators | Show results with:modulators
[79]
Small Molecule Inhibitors of GroEL That Disrupt Active Replication of ...
GroEL chaperonins are complex, oligomeric proteins that are upregulated in the cell under stressful conditions and prevent the misfolding and aggregation of ...