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Comprehensive Peace Accord

The Comprehensive Peace Accord was a bilateral agreement signed on 21 November 2006 between the and the (Maoist Centre), formally concluding the armed conflict initiated by the Maoists in 1996 that had resulted in over 17,000 deaths and widespread displacement. The accord committed both parties to multiparty democracy, civilian supremacy over the military, and the management of arms and armies through the Mission in , which verified the confinement of approximately 19,000 Maoist combatants and over 2,800 weapons in designated sites. It also mandated the formation of a Truth and Reconciliation Commission and a Commission of Investigation on Enforced Disappeared Persons to address atrocities, including extrajudicial killings and committed by both sides. Among its most notable outcomes, the CPA enabled the Maoists' into mainstream politics, contributing to the 2007 Interim , the 2008 elections, and the eventual abolition of the 240-year-old in 2008, culminating in Nepal's 2015 establishing a . However, implementation has been uneven, with persistent delays in rehabilitating ex-combatants, resolving land disputes, and operationalizing bodies—only enacted in 2014 but stalled by political disagreements and pressures—resulting in over unaddressed for war-era crimes. These shortcomings have fueled ongoing , including factional violence and incomplete army , underscoring challenges in translating ceasefires into enduring institutional reforms.

Historical Context

Origins of the North-South Conflict

The North-South conflict in arose from longstanding ethnic, religious, and cultural divisions, with the northern regions predominantly inhabited by Arabized Muslim populations influenced by centuries of Islamic expansion and Ottoman-Egyptian rule, contrasting sharply with the southern regions' diverse Nilotic and other African ethnic groups practicing or adopting later. These differences were compounded by economic disparities, as the north benefited from trade routes and urban development, while the south remained largely rural and underdeveloped, lacking . Pre-colonial interactions, including slave raids from the north into the south, further entrenched mistrust and perceptions of northern exploitation. British colonial administration from 1899 to 1956 intensified these divides through deliberate policies of separation under the Anglo-Egyptian Condominium. In 1922, the British enacted the Closed District Ordinance, prohibiting northern Sudanese from entering the south without permits, aiming to shield southern populations from Arab-Muslim cultural dominance and preserve tribal structures. Southern emphasized English and Christian influence, while the north was administered with Arabic as the and Islamic institutions intact, creating parallel administrative spheres that discouraged integration. The 1947 Juba Conference, convened by British officials, decided on a unified independent despite southern reservations, but with minimal southern input, sowing seeds of post-colonial alienation. This "Southern Policy" inadvertently institutionalized ethnic fragmentation, as British divide-and-rule tactics prioritized short-term stability over cohesive nation-building. Upon independence on January 1, 1956, northern elites, who dominated the transitional government in , centralized power without honoring informal promises of or equitable for the , which held only a fraction of parliamentary seats despite comprising about one-third of the population. Southern grievances escalated amid fears of and economic marginalization, culminating in the Torit of August 18, 1955, when southern soldiers rebelled against redeployment to northern units, protesting perceived discrimination and the impending northern hegemony. This incident marked the onset of the (1955–1972), fueled by demands for autonomy, as southern groups like the Anya-Nya rebels sought to counter northern-imposed Arabicization and Islamization policies. The conflict, which displaced hundreds of thousands and caused an estimated 500,000 deaths, underscored causal factors rooted in unaddressed colonial legacies and northern political exclusion of southern voices.

Second Sudanese Civil War (1983-2005)

The Second Sudanese Civil War erupted on May 16, 1983, when southern Sudanese soldiers mutinied in Bor against orders to redeploy north, protesting the central government's policies amid deepening north-south divides. President Jaafar Nimeiry's imposition of Sharia law nationwide in September 1983, which extended Islamic penal codes including amputations and stoning to the non-Muslim south, annulled the 1972 Addis Ababa Accord's regional autonomy and fueled the rebellion by alienating southern Christians and animists. These actions exacerbated longstanding grievances over economic marginalization, resource control—particularly oil discovered in the south—and Arabization efforts that privileged northern elites. In July 1983, John Garang, a former Sudanese army officer, formed the Sudan People's Liberation Movement/Army (SPLM/A) in Ethiopia's Bilpam camp, initially advocating a united, secular "New Sudan" rather than secession to broaden appeal across ethnic lines. The SPLA, drawing from diverse southern ethnic groups like Dinka, Nuer, and Equatorians, received early support from Ethiopia under Mengistu Haile Mariam, enabling territorial gains in Equatoria and Bahr el Ghazal by 1985. Khartoum's forces, backed by Libya and Iraq, countered with scorched-earth tactics, including aerial bombings and militias, while internal SPLA fractures emerged, notably the 1991 Nasir split led by Riek Machar, whose Nuer forces massacred up to 2,000 Dinka civilians in Bor, intensifying ethnic violence. The war's mid-phases saw stalemate, with government offensives capturing in 1992 and exploiting southern oil fields via pipelines to the north, generating revenue for arms despite . SPLA infighting and a 1988 Bahr el Ghazal —killing an estimated 250,000 from starvation and due to disrupted aid—weakened rebels, though Uganda's covert aid from 1995 bolstered recoveries. By the late 1990s, SPLA in 2000-2002 seized key oil areas, shifting momentum amid Khartoum's isolation for harboring terrorists. Atrocities proliferated: government-backed Popular Defense Forces conducted slave raids and village burnings, while SPLA factions enforced and targeted rivals, contributing to a total death toll of approximately 2 million, mostly civilians from , , and indirect effects, alongside 4 million displaced. International dynamics prolonged the conflict: and provided bases and troops to SPLA against Khartoum's support for their insurgents, while aided the government until shifting alliances. exhaustion, U.S.-brokered talks from 2002, and Garang's pragmatic shift toward eroded hardlines, culminating in the 2005 that ended hostilities after 22 years, the longest in African history.

Negotiation and Signing

Pre-Naivasha Diplomacy and Protocols

The (IGAD), then known as IGADD, initiated formal mediation in the on , 1993, by establishing a Standing Committee on Peace to facilitate negotiations between the (GoS) and southern rebel groups, primarily the /Army (SPLM/A). These efforts built on prior bilateral and regional attempts, including Nigerian-mediated talks in in 1992–1993, which collapsed amid SPLM/A internal divisions and GoS intransigence on core issues like religion-state separation. A foundational document emerged on May 20, 1994, with the IGAD Declaration of Principles (), which emphasized maintaining 's unity as a priority while endorsing democratic governance, accountability, equal rights, separation of religion and state, and—controversially—the right to for marginalized regions if unity proved unviable. The , signed by IGAD member states and some Sudanese parties but initially resisted by the GoS, aimed to address root causes such as ethnic marginalization and Islamic law imposition in non-Muslim areas; however, progress stalled due to GoS military offensives, SPLM/A factionalism after the 1991 Nasir split, and lack of enforcement mechanisms. Parallel initiatives, including the 1997 Khartoum Peace Agreement between the GoS and splinter southern factions excluding the SPLM/A, and the 1999–2000 Egyptian-Libyan Initiative, yielded partial ceasefires but failed to engage the main belligerents comprehensively, as they prioritized GoS-aligned outcomes over inclusive . By the early 2000s, renewed international pressure—spurred by U.S. sanctions, humanitarian crises, and post-9/11 geopolitical shifts—revitalized IGAD mediation under Kenyan facilitation by Lieutenant General Lazaro Sumbeiywo, who shuttled between Khartoum and SPLM/A leader John Garang. This culminated in the Machakos Protocol, signed on July 20, 2002, in Machakos, Kenya, by the GoS and SPLM/A, which reaffirmed the DoP principles and introduced concrete commitments: a six-year interim period for national power- and wealth-sharing, followed by a self-determination referendum for southern Sudan; supremacy of a secular national constitution with Sharia limited outside the south; and guarantees for freedom of religion and public office eligibility based on citizenship. The protocol's establishment of an Assessment and Evaluation Commission for oversight addressed prior trust deficits, enabling the transition to substantive Naivasha talks in October 2002 by resolving foundational disputes on unity versus secession and religion's role. Despite optimism, implementation risks persisted, as the GoS viewed unity as the sole viable outcome while the SPLM/A prioritized secession safeguards.

Final Negotiations and Key Signatories

The final phase of negotiations for the occurred in , , from late 2004 onward, building on prior protocols agreed in 2004 covering power-sharing, wealth-sharing, security arrangements, and the right to for southern . High-level talks between Sudanese First Vice President , representing the National Congress Party-led , and /Army (SPLM/A) Chairman addressed remaining sticking points, including the structure of the interim period and modalities, amid pressure from mediators including the (IGAD) and the Troika countries (, , and ). These discussions resolved final elements on December 31, 2004, activating a agreement from December 2004 and paving the way for the comprehensive accord. The signing ceremony took place on January 9, 2005, in , , marking the formal conclusion of over two years of intensive initiated in 2002. signed on behalf of the , while signed for the SPLM/A, committing both parties to a six-year interim period starting July 9, 2005, during which southern Sudan would gain autonomy and the right to a on independence. Key witnesses to the signing included Kenyan President as IGAD chair, U.S. Secretary of State , and representatives from IGAD member states (, ), the , the , the League of Arab States, and the , underscoring broad international endorsement to enforce implementation. The presence of these actors, particularly U.S. involvement under the Sudan Peace Act of 2002, reflected diplomatic leverage applied to , including sanctions threats, to secure concessions on oil and division. This multilateral witnessing aimed to deter violations, though subsequent assessments noted challenges in enforcement due to limited on-ground mechanisms.

Core Provisions

Power-Sharing Arrangements

The power-sharing arrangements under the (), signed on January 9, 2005, established a (GNU) to govern during a six-year interim period, allocating positions between the National Congress Party (NCP), representing the , and the (SPLM), representing southern interests, alongside quotas for other parties. The formula prioritized equitable representation to mitigate dominance by either party, with the NCP allocated 52% of national executive and legislative positions, the SPLM 28%, other northern parties 14%, and other southern parties 6%. This structure aimed to integrate former adversaries into a federal system with three tiers of government: national, Government of Southern Sudan (GOSS), and state levels, while delineating exclusive, concurrent, and residual powers to prevent overlap and conflict. In the executive branch, the CPA retained of the NCP as President of the Republic, with of the SPLM appointed as First upon signing; following Garang's death in , Salva Kiir assumed the role. Additional vice presidencies were designated for northern and southern opposition figures, ensuring SPLM influence over key ministries such as finance, energy, and through the 28% quota. The GOSS, established as an autonomous for the south, granted the SPLM 70% of positions, the NCP 15%, and other southern parties 15%, with its president—initially Garang, then Kiir—holding authority over southern-exclusive matters like police and education. Legislatively, the National Legislature comprised the , with 450 seats distributed per the national formula (e.g., approximately 234 for NCP, 126 for SPLM), responsible for national laws on defense, , and , and the of States, with 50 members (two per northern state, ten for southern states, plus two for Abyei), focused on federal-state relations. In the south, the Southern Sudan mirrored the GOSS executive ratios, enacting laws on concurrent powers like and . Judicial power-sharing included an independent with equal NCP and SPLM appointees, plus others, to adjudicate disputes under an interim that suspended national law in the south while applying it in the north. At the state level, northern states allocated 70% of positions to NCP and affiliates, with 30% for others including SPLM, while southern states followed the GOSS model of SPLM dominance. These arrangements, embedded in Chapter II, sought to foster unity through proportional inclusion but faced challenges from non-signatory groups' marginalization, such as northern opposition parties excluded from core quotas.
LevelNCP ShareSPLM ShareOther NorthernOther Southern
National Executive/Legislature52%28%14%6%
GOSS Executive/Legislature15%70%N/A15%
Northern States~70%N/A~30% (incl. SPLM)N/A
Southern States15%70%N/A15%

Wealth-Sharing and Resource Management

The Wealth-Sharing Protocol, incorporated into Chapter III of the and initialed on 7 January 2004 in , , between the (GoS) and the /Army (SPLM/A), established guiding principles for equitable distribution of national resources, emphasizing that oil and other wealth from Southern constitutes national revenue to be shared between northern and southern entities. The protocol affirmed of and resources, with states exercising subject to national laws for strategic assets, and created mechanisms to prevent resource-based conflicts by prioritizing derivation-based sharing for state-level revenues while ensuring federal oversight for transboundary resources like oil. Central to the protocol was the management of 's oil sector, where approximately 75% of lay in Southern Sudan states such as and Upper , though export remained in the north. The National Petroleum Commission (NPC), comprising equal representatives from GoS and the Government of Southern Sudan (GoSS) plus independent experts, was mandated to oversee petroleum production, approve new licenses, monitor environmental compliance, and ensure transparent revenue accounting aligned with international standards. The National Oil Company (NOC), under GoS control initially, retained operational authority over existing contracts, but required NPC approval for major decisions, with provisions for GoSS to assume greater roles over the six-year interim period. Oil revenue distribution followed a formula for fields in designated Southern Sudan areas: gross revenues minus operating and production costs, minus a 2% allocation to the producing state, with the net balance divided 50% to the GoSS and 50% to the national Government of National Unity () budget. This applied to baseline production from pre-2004 contracts, with new fields requiring NPC consent and equitable sharing; Abyei's resources were treated separately pending demarcation, with revenues held in . Non-oil revenues, including and taxes, were to be shared based on for states (primarily benefiting producing regions) and population-derived formulas for national non-derivable income, aiming to address historical disparities without undermining unity. Additional provisions addressed broader , including the creation of a National Land Commission to resolve disputes over communal and state lands, and commitments to sustainable use of under joint technical committees, though oil dominated due to its fiscal significance—accounting for over 50% of Sudan's GDP by 2004. The protocol mandated linkage, with oil transparency aiding international financial assistance, and prohibited resource exploitation that could prejudice the referendum.

Security and Ceasefire Mechanisms

The Agreement on Permanent Ceasefire and Security Arrangements, signed on December 31, 2004, in , , declared a permanent ceasefire between the Sudan Armed Forces (SAF) and the Sudan People's Liberation Army (SPLA), effective upon the Comprehensive Peace Agreement's (CPA) formal signing on January 9, 2005 (D-Day), with all hostilities required to cease within 72 hours thereafter. The parties committed to freezing their forces in current positions initially, exchanging lists of troop deployments within 15 days of D-Day, releasing prisoners of war within 30 days, and refraining from recruiting, mobilizing, or arming other groups that could undermine the ceasefire. Implementation proceeded in defined phases to ensure phased redeployment and force restructuring. The pre-interim phase lasted six months from D-Day, initiating redeployment from southern (17% reduction by month six) and SPLA withdrawal from eastern (30% by month four), alongside starting , , and reintegration (DDR) activities and forming Joint Integrated Units (JIUs). The six-year interim period divided into two 36-month halves, mandating full redeployment north of the 1/1/1956 border by month 30 and SPLA completion from northern areas by month 12, with JIUs deployed by month nine. A post-interim phase of six months followed, envisioning into a unified National Armed Forces if the favored unity or dissolution of JIUs upon . Central to security arrangements was the establishment of JIUs under the September 25, 2003, Agreement on Security Arrangements During the Interim Period, comprising equal numbers from and SPLA to symbolize national unity and serve as a potential nucleus for a post-referendum . These units totaled 39,000 personnel: 24,000 deployed in southern , 6,000 in , 6,000 in southern , and 3,000 in , organized into five divisions and one brigade, with command overseen by a Joint Defence Board chaired alternately by the respective chiefs of general staff. and SPLA maintained separate commands during the interim but coordinated through the board, with a common to be developed within one year of the period's start. Ceasefire monitoring relied on a multi-tiered structure, including the Ceasefire Joint Military Committee (CJMC) headquartered in to oversee compliance, supported by Area Joint Military Committees (AJMCs) in sectors like , , and , and Joint Military Teams for on-ground verification. The (UNMIS) provided technical assistance, verification, and de-mining support, with its force commander initially chairing the CJMC's first meeting on May 8, 2005; parties granted UNMIS unrestricted access for monitoring. A Ceasefire Political addressed politically sensitive issues impacting security, such as border disputes. DDR programs targeted force reduction, managed by a National DDR Coordination Council and regional commissions, with child soldiers to be demobilized within six months of CPA signing and international donors funding reintegration. Other armed groups were to be incorporated into , , or civilian roles, with DDR tailored for them by the Southern Sudan DDR Commission by the pre-interim period's end. These mechanisms aimed to build confidence through verifiable steps, though implementation faced delays in JIUs reaching full strength (84.7% by October 2008) and DDR demobilizing around 48,594 combatants by May 2011.

Right to Self-Determination

The (), signed on January 9, 2005, explicitly granted the people of the right to , to be exercised through a at the end of a six-year interim period following the agreement's implementation. This provision, outlined in Chapter I of the , stated that the people of have the right to , , through a to determine their future status, with the agreement committing parties to make unity an attractive option during the interim while preserving the mechanism for potential . The right addressed longstanding grievances from the , where southern demands for greater autonomy or independence stemmed from perceived policies, resource inequities, and imposed by . The foundational basis for this right traced to the Machakos Protocol, signed on July 20, 2002, between the and the /Army (SPLM/A), which affirmed that the people of would exercise via after the interim period, with options limited to unity under a new Sudanese or independence. Under CPA terms, the —scheduled for January 9, 2011—required voter eligibility for Sudanese citizens resident in Southern Sudan or those of southern origin displaced by , with a sufficient for , though parties agreed to international oversight for credibility. The Southern Sudan Commission, established under CPA protocols, was tasked with conducting the vote in the three southern regions (Bahr el Ghazal, , and Upper Nile), excluding disputed areas like , whose own process was deferred to a separate protocol. This mechanism represented a , balancing northern insistence on national integrity with southern aspirations for , though implementation challenges, such as defining borders and ensuring free participation, foreshadowed post-referendum tensions. The integrated this right into Sudan's Interim Constitution of 2005, which in Article 219 enshrined the as the vehicle for southern , requiring at least 60% for validity and prohibiting to promote unity. International actors, including the (IGAD) and the , endorsed the provision as essential to ending the that had claimed an estimated 2 million lives since 1983, viewing it as a pragmatic resolution to irreconcilable ethnic and religious divides rather than indefinite . Critics from northern Sudanese perspectives argued the clause incentivized division by legitimizing , potentially undermining national cohesion, while southern leaders like emphasized it as a safeguard against renewed . Empirical data from prior autonomy experiments, such as the 1972 Accord's collapse amid oil discoveries and imposition, underscored the causal necessity of an exit option to secure , as repeated centralization efforts had fueled .

Implementation (2005-2011)

Interim Government and Institutional Reforms

The Comprehensive Peace Agreement (CPA), signed on January 9, 2005, established a six-year interim period commencing July 9, 2005, during which a Government of National Unity (GNU) was formed to administer Sudan at the national level alongside a semi-autonomous Government of Southern Sudan (GOSS). The GNU's executive branch featured a presidency shared between the National Congress Party (NCP), led by President Omar al-Bashir, and the Sudan People's Liberation Movement (SPLM), with John Garang appointed as First Vice President on July 9, 2005; following Garang's death in a helicopter crash on July 30, 2005, Salva Kiir assumed the role. Power-sharing ratios in the GNU allocated 52% of positions to the NCP, 28% to the SPLM, 14% to other southern political parties, and 6% to other northern parties, applying to the Council of Ministers, National Assembly, and other institutions. The National Legislature was restructured into a bicameral body: the , with 450 seats distributed according to the aforementioned ratios plus additional representation for comprehensive peace parties, and the Council of States, comprising two representatives from each of Sudan's 25 states (later 26 with Southern Kordofan and adjustments) to ensure federal balance. The Interim National , promulgated on July 6, 2005, formalized these arrangements, introducing reforms such as a comprehensive guaranteeing freedoms of expression, , and movement; promotion of a decentralized democratic system; and establishment of an independent judiciary with a to adjudicate disputes between government levels. It also mandated dual legal systems—Sharia-based in the north and secular in the south—while requiring national laws to respect religious and cultural diversity. Institutional reforms extended to electoral and political party frameworks, with the CPA stipulating revisions to electoral laws for credible, transparent elections by 2009 and registration of under new guidelines to foster . The judiciary saw appointments of SPLM-nominated judges to the and other bodies, aiming for balanced representation, though implementation faced delays due to NCP dominance in northern institutions. These changes marked a shift toward and power , with the GOSS receiving authority over southern affairs, though national security and remained centralized under the GNU.

Border and Abyei Disputes

The (CPA) mandated the demarcation of the 1 January 1956 borders between northern and southern using technical mechanisms, including a joint Border Technical Committee established in 2005, but progress was minimal, with only preliminary surveys completed by 2007 and full demarcation stalling amid disputes over methodology and sovereignty claims. Disagreements centered on oil-rich areas like (known as Panthou to southern forces), where southern claims persisted despite its exclusion from the CPA's protocol, leading to intermittent skirmishes between Armed Forces (SAF) and Sudan People's Liberation Army (SPLA) from 2008 onward that undermined the ceasefire. The region, designated for special administrative status under the CPA's Abyei Protocol signed on 31 December 2004, was to hold a on its final status concurrent with southern Sudan's in 2011, following boundary determination by the Abyei Boundaries Commission (). The , composed of two northern, two southern, and one international member, issued its report on 14 July 2005, defining based on the 1905 Turco-Egyptian administrative boundaries, which expanded the area to include key oil fields and was rejected by as exceeding its mandate. In response, the parties agreed on 11 July 2008 to arbitrate the dispute at the () in , submitting the ABC report for review without challenging the arbitration agreement's validity. The tribunal, chaired by Pierre-Marie Dupuy with members from , SPLM/A, and neutrals, delivered its final award on 22 July 2009, upholding the ABC's historical methodology but adjusting boundaries: it excluded and the Diffra oil field from , reduced the area's size by about half (to approximately 10,546 square kilometers), and included the Muglad Basin's northeastern pastures inhabited by Dinka Ngok, while affirming the Ngok Dinka's right to participate in the . The SPLM/A accepted the ruling, enabling partial implementation like joint administration, but contested parts of it, including the inclusion of certain nomadic grazing areas for Misseriya Arabs, delaying full demarcation and troop redeployments. Implementation faltered critically in 2011, as escalating tensions led to SPLA deployments in Abyei, prompting an SAF offensive on 21 May 2011 that captured Abyei town, displaced over 50,000 residents (primarily Ngok Dinka), and triggered humanitarian crises including refugee flows to South Sudan. United Nations Mission in Sudan (UNMIS) peacekeepers were overwhelmed, with five Indian troops killed in clashes, highlighting security vacuums. The Abyei referendum was not held alongside southern Sudan's on 9 January 2011, due to unresolved boundaries and Khartoum's insistence on Misseriya voting rights, exacerbating revenue disputes over Abyei's oil fields (producing around 15-20% of Sudan's output pre-secession). These failures contributed to broader border instability, with only isolated segments of the 2,000-kilometer 1956 border physically marked by mid-2011, perpetuating risks of renewed conflict as southern independence loomed.

Oil Revenue Distribution and Economic Integration

The Wealth Sharing Protocol of the () established a framework for distributing Sudan's revenues, which constituted the bulk of national income, to promote economic equity during the six-year interim period. Under the protocol, 2 percent of gross revenue was allocated to -producing states and regions in proportion to their production volumes, while the remaining net revenue—calculated after deducting a 50/50 shared production cost and a standard operating margin for the —was divided equally between the Government of National Unity in and the Government of Southern Sudan (GoSS). This 50-50 split applied to all produced in southern fields, despite pipelines and refineries being predominantly in the north, effectively compensating the south for transit dependencies. To facilitate management, the mandated the creation of the National Petroleum Commission (NPC), comprising equal representation from northern and southern parties, tasked with approving oil contracts, setting production policies, and ensuring transparent revenue accounting, alongside the Oil Revenue Stabilization Account (ORSA) to buffer against price volatility. Initial transfers commenced in 2005, with the national government disbursing approximately $670 million to the GoSS in the first quarter of operations under the new system, funding much of southern and services. However, the NPC proved ineffective, convening irregularly and failing to conduct required audits, as northern dominance in oil operations hindered joint oversight. Implementation challenges from 2005 to 2011 severely undermined , as disputes over revenue valuation, inflated cost deductions, and opaque reporting led to chronic shortfalls for the GoSS, estimated at hundreds of millions annually by southern officials. These tensions peaked in 2007 when the (SPLM) temporarily withdrew from the unity government, citing non-payment of owed revenues exceeding $500 million alongside and issues, exacerbating mistrust and stalling joint economic initiatives. While the preserved a nominal single economic space through shared and national fiscal policies, the south's reliance on transit through the north fostered dependency rather than , with limited progress in cross- or joint projects amid ongoing verification failures and unilateral decisions.

Referendum and Secession

The 2011 Self-Determination Referendum

The self-determination for Southern Sudan, mandated by the 2005 , took place over seven days from January 9 to 15, 2011, allowing residents of the region to choose between continued unity with or . , conducted jointly by the Southern Sudan (SSRC) and the Elections Commission, ran from November 15 to December 8, 2010, yielding 3,932,588 registered voters across Southern Sudan, Northern , and out-of-country voting sites in eight nations. The process required a minimum 60% turnout for validity under the Southern Sudan 2009, a threshold surpassed early as participation in Southern Sudan exceeded 90% by the final voting day. Overall reached 97.58%, with 3,837,406 valid votes cast from the registered pool. The SSRC announced preliminary results progressively, confirming high support, and finalized tallies on February 7, 2011: 98.83% (3,792,518 votes) favored independence, while 1.17% opted for unity. These outcomes reflected longstanding grievances over resource inequities, ethnic divisions, and decades of , though Northern Sudanese participation remained lower—over 50% in observed centers—amid reports of and of reprisals. International observation missions, including the Carter Center and the (UNMIS), deployed over 100 teams and deemed the referendum peaceful, credible, and consistent with international democratic standards, representing the genuine will of Southern Sudanese voters. The Election Observation Mission similarly endorsed the process as technically sound and reflective of voter intent. Sudanese President and Southern leader Salva Kiir accepted the results without contest, averting immediate violence despite prior tensions over implementation delays in the CPA. Challenges persisted, including logistical strains like inadequate and transportation in remote areas, procedural lapses such as unauthorized assisted voting in seven Southern states, and voter registry inaccuracies from compressed review periods. Observers documented anomalies, such as 267 polling centers reporting turnout exceeding 100%, restricted access to data processing in , and security forces inside 20% of Southern centers potentially compromising ballot secrecy. Complaint mechanisms functioned poorly, with consideration committees absent from 94% of Southern centers, though no evidence suggested these flaws altered the decisive pro-independence margin. The referendum's success hinged on sustained monitoring and the parties' restraint, enabling South Sudan's formal independence on July 9, 2011.

South Sudan's Independence and Immediate Aftermath

South Sudan achieved formal independence from on July 9, 2011, marking the culmination of the 2005 Comprehensive Peace Agreement's provisions for after decades of . The recognized the Republic of as a on the same day, followed promptly by and numerous other nations, with admission to the occurring on July 14, 2011. Salva Kiir, leader of the (SPLM), assumed the presidency, inheriting a Transitional Constitution that established a but faced immediate hurdles in institution-building amid widespread illiteracy, rudimentary , and a largely . The nascent state's economy was overwhelmingly dependent on exports, which constituted approximately 98% of in 2011, with daily production around 350,000 barrels primarily from fields in and Upper states but reliant on pipelines and ports in for export. Lacking diversification, non-oil sectors contributed minimally to GDP, and the generated insufficient domestic to fund basic operations without oil inflows, exacerbating vulnerability to external shocks. Internal challenges included integrating former rebel forces into a national army, managing returnees from —estimated at over 300,000 by late 2011—and addressing ethnic divisions within the SPLM-dominated , though full-scale did not erupt until 2013. Tensions with rapidly escalated over unresolved issues, particularly transit fees, processing charges, and border demarcation, leading to accuse of confiscating $815 million in crude by early 2012. On January 23, 2012, ordered the shutdown of all to halt alleged , halting exports that crippled the and triggered , , and a projected GDP contraction of up to 25% that year. Border clashes intensified, culminating in the April 10, 2012, seizure of the (Panthou) oilfield by South Sudanese forces, which claimed as its territory and recaptured days later amid aerial bombardments, raising fears of renewed war. These events underscored the fragility of post-secession relations, with international efforts, including from the , yielding only temporary de-escalations by mid-2012.

Criticisms and Shortcomings

Failure to Address Peripheral Conflicts

The (CPA), signed on January 9, 2005, between the and the /Army, delimited its scope to the north-south civil war and transitional border regions of , , and , thereby excluding active conflicts in and eastern Sudan. This omission stemmed from the framework, which prioritized the dominant north-south divide without integrating representatives from peripheral insurgencies, allowing parallel wars to intensify unchecked. In , rebellion erupted on February 26, 2003, when the Liberation Army attacked government installations in , prompting a counteroffensive involving militias that displaced over 2 million people and caused an estimated 300,000 deaths by 2008, according to figures. The CPA's silence on enabled to reallocate military resources from the south to the west, exacerbating and , as peace talks for —such as those leading to the 2006 Darfur Peace Agreement—remained separate and largely ineffective due to non-participation by key factions like Abdel Wahid's Liberation Movement faction. Critics, including analysts from the , argue this undermined any claim to "comprehensiveness," as unresolved grievances in marginalized peripheries reinforced perceptions of northern Arab dominance and fueled . Eastern Sudan's conflicts, involving groups like the Eastern Front alliance formed in 2005 and encompassing Beja and Rashaida tribes, traced back to economic marginalization and underdevelopment since the 1990s, with clashes escalating in the Red Sea Hills and Kassala regions. The CPA provided no mechanisms for these areas, such as revenue sharing or autonomy protocols akin to those for southern states, leading to a 2006 Eastern Sudan Peace Agreement negotiated independently but hampered by limited implementation and ongoing militia activity. In transitional zones, CPA protocols mandated popular consultations by 2007 to address local demands, yet these processes faltered due to disputes over methodology and security, culminating in post-2011 rebellions by Sudan People's Liberation Movement-North holdouts in South Kordofan and Blue Nile, where fighting displaced tens of thousands starting June 5, 2011. This selective focus perpetuated Sudan's multi-front instability, as peripheral actors viewed the CPA as a southern-centric bargain that preserved central , diverting international attention and resources away from holistic reforms. By 2007, reports from the highlighted how unaddressed peripheral violence eroded trust in the CPA framework, risking spillover effects like arms proliferation and refugee flows that indirectly strained north-south implementation. Ultimately, the agreement's failure to forge a national encompassing all combatants left underlying causal drivers—resource inequities, ethnic exclusion, and weak —intact, contributing to Sudan's descent into broader civil strife by the 2020s.

Governance and Corruption Challenges

The (CPA) of 2005 included provisions for power-sharing between the National Congress Party (NCP) and (SPLM), alongside an interim constitution establishing a structure with autonomy for southern , yet implementation faltered due to institutional weaknesses and in the nascent Government of Southern Sudan (GOSS). These shortcomings manifested in the SPLM's dominance, which prioritized networks over merit-based administration, exacerbating ethnic divisions and sidelining non-Dinka groups in key appointments. By 2007, delays in integrating southern institutions into a cohesive highlighted a lack of political will and technical capacity, as evidenced by stalled reforms in and sectors. Corruption permeated the GOSS from its inception, with oil revenues—intended for equitable development under CPA wealth-sharing protocols—frequently diverted through opaque contracts and ghost worker schemes. In November 2006, five senior officials were suspended amid probes into , underscoring early systemic graft that eroded public trust. The "Dura Saga" , peaking around 2008-2010, involved the of an estimated $200-300 million in grain funds, where contracts were awarded to fictitious companies linked to SPLM elites, diverting resources meant for famine relief. Surveys such as the 2011 revealed widespread perceptions of and as the most corrupt entities, with over 70% of respondents reporting bribes as commonplace in daily interactions. These governance lapses persisted into the post-referendum era, as the 's failure to enforce mechanisms allowed to supplant , contributing to fiscal by 2011 with billions in unaccounted oil income. South Sudan's consistent bottom rankings on Transparency International's —scoring 11 out of 100 in 2022—trace roots to this period, where elite predation on state resources prioritized personal enrichment over institution-building. Weak and for high-level offenders, including ministers implicated in scandals like those involving Deng Alor, further entrenched a culture of , undermining the CPA's vision of equitable rule. International monitors, including UN panels, have noted how such fueled inter-elite rivalries, setting the stage for broader instability without robust external enforcement of CPA benchmarks.

International Involvement and Unrealistic Expectations

The negotiations leading to the Comprehensive Peace Agreement (CPA) were primarily facilitated by the Intergovernmental Authority on Development (IGAD), with substantial support from the Troika countries—United States, United Kingdom, and Norway—which provided diplomatic pressure, funding, and technical assistance to bridge gaps between the Government of Sudan and the Sudan People's Liberation Movement/Army (SPLM/A). The agreement was signed on January 9, 2005, in Naivasha, Kenya, with witnesses including the Troika nations, Italy, and others, reflecting broad international endorsement aimed at ending the Second Sudanese Civil War that had claimed over 2 million lives since 1983. During the CPA's interim period (2005–2011), international actors played key roles in monitoring compliance: the United Nations deployed the (UNMIS) in March 2005 with over 10,000 personnel to oversee the , facilitate elections in April 2010, and prepare for the January 2011 , while the continued advocacy for power-sharing and wealth division protocols. IGAD and the Troika also mediated disputes over oil revenue sharing, which allocated 50% of southern oil production to the despite production challenges, and border demarcation efforts that remained incomplete by independence. However, enforcement was limited, as international leverage relied on aid conditionality rather than coercive measures, allowing delays in of over 100,000 troops from both sides. International expectations for the CPA were ambitious, positioning it as a blueprint for democratic , equitable resource distribution, and potential national unity, with the U.S. and framing the 2011 referendum as a pathway to that would stabilize the region and counter Islamist influence in . Yet these assumptions proved unrealistic, as the agreement's narrow focus on the north-south binary overlooked peripheral conflicts in (escalating from 2003), , and , where over 300,000 deaths occurred post-CPA due to unaddressed grievances and exclusion of non-SPLM groups. The international community's emphasis on rapid —prioritizing the over institutional capacity-building—ignored deep ethnic fractures within , where the SPLM functioned more as a front than a unified political entity, leading to militarized governance and of oil revenues exceeding $10 billion annually without corresponding service delivery. UNMIS and donors provided over $4 billion in aid during the interim but failed to enforce reforms against or integrate militias, fostering unrealistic optimism that external (e.g., protecting 200,000 civilians in compounds by 2013) could substitute for internal accountability, which contributed to South Sudan's erupting in December 2013 between forces loyal to President Salva Kiir and Vice President . This approach, driven by geopolitical goals like U.S. successes, underestimated causal factors such as patronage networks and resource curses, rendering the CPA a partial truce rather than a sustainable framework.

Long-Term Impact and Legacy

Achievements in Ending the Civil War

The Comprehensive Peace Agreement (CPA), signed on January 9, 2005, between the Government of Sudan and the Sudan People's Liberation Movement/Army (SPLM/A), terminated the Second Sudanese Civil War (1983–2005), which had resulted in approximately two million deaths and four million displacements. The accord established a permanent ceasefire, effective within 72 hours of signing, encompassing southern Sudan, the Nuba Mountains, southern Blue Nile, Abyei, and eastern Sudan, thereby halting large-scale hostilities between the Sudan Armed Forces (SAF) and SPLA. This ceasefire provision, building on a 2003 protocol, enabled Sudanese Armed Forces withdrawals and SPLA redeployments largely on schedule by September 2006, restoring relative security to southern regions and preventing immediate resumption of north-south combat. Military integration under the included the formation of Joint Integrated Units (JIUs) comprising 21,000 soldiers (50% from and 50% from SPLA) to monitor compliance and foster cooperation in contested areas. By 2006, these units were 60% staffed and operated mostly without incident, contributing to efforts that integrated rival militias, such as Paulino Matip's forces into the SPLA in January 2006, reducing fragmented armed groups and intra-southern violence that had previously undermined unified resistance. These measures marked a diplomatic success in concluding Africa's longest , as the framework sustained a six-year interim period of stability (2005–2011) without reverting to full-scale conflict between northern and southern forces. Politically, the CPA instituted power-sharing via a Government of National Unity (GoNU) and a semi-autonomous Government of Southern (GoSS), allocating southern representation in national institutions and elevating SPLM/A leader to vice president in 2005, which integrated former rebels into governance and diminished incentives for renewed . This asymmetrical federal structure devolved authority to southern leadership, enabling local administration and elections in April 2010 across national, southern, and state levels, further embedding peace through participatory processes that channeled grievances into political rather than military outlets. Overall, these provisions averted the war's continuation, allowing humanitarian access and return of displaced populations during the interim phase.

Contributions to Ongoing Instability

The Comprehensive Peace Agreement's ambiguous provisions on border demarcation left approximately 20% of the north-south undefined, particularly in oil-rich areas, fostering disputes that escalated into armed confrontations post-independence. In , the failure to conduct the mandated due to disagreements over voter eligibility, including nomadic Misseriya rights, culminated in a invasion on May 21, 2011, displacing over 110,000 residents and violating CPA security arrangements. Similarly, the oil field dispute prompted South Sudanese forces to seize the area on April 10, 2012, prompting Sudanese counteroffensives and marking a de facto between the states. These territorial ambiguities, rooted in the CPA's deferral of resolution mechanisms, perpetuated militarized tensions rather than enabling stable separation. Oil revenue protocols under the , which allocated 50% of southern oil proceeds to the Government of Southern Sudan after a 2% transit fee to , inadequately anticipated post-secession frictions over field ownership and transit costs. Disputed fields like , producing about 37% of 's pre-split output, triggered negotiations that collapsed when demanded $32 per barrel in fees against South Sudan's $1 offer, leading to a production shutdown on January 28, 2012, that halved South Sudan's output and caused billions in lost revenue for both sides. This , without robust enforcement, incentivized proxy conflicts and pipeline , undermining fiscal stability and fueling cross-border hostilities into 2013. Internally, the CPA's emphasis on north-south power-sharing overlooked entrenched ethnic cleavages within southern factions, leaving the (SPLM) as a weakly institutionalized entity dominated by military hierarchies rather than democratic structures. This institutional shortfall manifested in the December 2013 outbreak of , as rivalries between Salva Kiir's Dinka supporters and Riek Machar's Nuer base fractured the Sudan People's Liberation Army along ethnic lines, resulting in over 400,000 deaths by 2021 and widespread atrocities. The agreement's failure to mandate comprehensive demobilization or inclusive governance reforms allowed elite networks to prioritize tribal mobilization over national cohesion, transforming liberation-era alliances into post-independence fault lines. Vagaries in CPA implementation, exploited by spoilers on both sides, further entrenched instability by deferring accountability for violations and neglecting . Provisions for joint integrated units and national army unification remained partially unrealized, preserving parallel forces prone to during crises, while unaddressed grievances in transitional areas like and reignited insurgencies post-2011. Collectively, these shortcomings shifted conflict dynamics from interstate war to fragmented, resource-driven skirmishes and internal implosions, contradicting the agreement's intent for durable separation.

Post-2011 Developments and Relations Between Sudan and South Sudan

Following 's independence on July 9, 2011, relations with deteriorated rapidly due to unresolved issues from the , particularly revenue sharing and border demarcation. inherited approximately 75% of former 's reserves but remained dependent on 's pipelines and refineries for , leading to disputes over fees and arrears. In January 2012, halted production of its 350,000 barrels per day to pressure , which had confiscated shipments and demanded $10.5 billion in alleged arrears, exacerbating economic crises in both states. Tensions escalated into armed conflict during the in March-April 2012, when clashes along the undemarcated border intensified over the oil-producing Heglig/Panthou area, claimed by both sides. South Sudanese forces seized on April 10, halting production at Sudan's largest oilfield and prompting Sudanese airstrikes and ground counteroffensives that recaptured the town by April 20. The deemed South Sudan's occupation illegal under , urging withdrawal, while both governments accused the other of aggression amid broader border skirmishes that displaced thousands. Diplomatic intervention by the and international mediators yielded partial resolutions in 2012. On , an oil agreement outlined revenue sharing based on production volumes, with paying a $3.028 billion arrears settlement over installments and a 3.5% fee. This was formalized in nine cooperation pacts signed , addressing oil , border security, trade, and banking, enabling to resume pumping by late 2012 and stabilizing exports through . However, full border demarcation remained elusive, with establishing a demilitarized while disputes persisted over 1,000 km of . The region, an oil-rich border enclave designated for a separate under the 2005 agreement, became a flashpoint with no vote held due to Sudanese obstruction and ethnic clashes between Ngok Dinka (aligned with ) and Misseriya nomads (aligned with ). occupied in May 2011, displacing over 100,000 residents, prompting UN Interim Security Force for (UNISFA) deployment in June 2011 to monitor a . Recurrent violence, including attacks killing dozens annually, continued, with a 2019 UN assessment identifying potential for resolution via joint administration but stalled by mutual distrust. From 2013 onward, bilateral ties fluctuated amid South Sudan's internal (2013-2018) and , with oil comprising 98% of South Sudan's revenue and significant Sudanese fees. Production interruptions occurred, such as South Sudan's 2013 shutdowns, but 2012 pacts held, though Sudan periodically threatened closures over unpaid fees. security cooperation waned after 2016, with Sudan withdrawing joint forces, leading to sporadic incursions. Recent developments, particularly Sudan's civil war erupting April 15, 2023, between the and , have further strained relations by disrupting oil flows and talks. Refugee influxes into exceeded 700,000 by mid-2024, while armed groups exploited Sudan's chaos for cross-border raids, halting political dialogue on 's status and borders as of November 2024. Despite occasional high-level meetings, such as 2021 pledges for demarcation, implementation lagged, with UN reports citing ongoing militia presence violating 2011 pacts and risking escalation. Economic linkages persist, but mutual accusations of support for rebels undermine trust.

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