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Non-coding RNA

Non-coding RNAs (ncRNAs) are a diverse class of RNA molecules transcribed from the genome that do not encode proteins, instead serving essential regulatory roles in gene expression, epigenetic modifications, and cellular architecture across all domains of life.^[1] These molecules constitute the vast majority of eukaryotic transcriptional output, with approximately 98% of human genome transcription producing ncRNAs rather than protein-coding messenger RNAs (mRNAs).^[2] Unlike mRNAs, ncRNAs function primarily through their structural and sequence-specific interactions with DNA, RNA, or proteins to modulate biological processes from development to disease.^[3] ncRNAs are broadly classified into two main categories based on length: small ncRNAs, typically under 200 nucleotides, and long ncRNAs (lncRNAs), exceeding 200 nucleotides.^[4] Small ncRNAs include microRNAs (miRNAs), which silence target mRNAs via degradation or translational repression; small interfering RNAs (siRNAs), involved in RNA interference; Piwi-interacting RNAs (piRNAs), crucial for transposon silencing in germline cells; and small nucleolar RNAs (snoRNAs), which guide modifications on other RNAs.^[1] lncRNAs, such as Xist (which coats the X chromosome to initiate dosage compensation in females) and H19 (implicated in genomic imprinting), often exhibit tissue-specific expression and participate in complex regulatory networks by recruiting chromatin-modifying complexes or forming nuclear condensates.^[4] The functional versatility of ncRNAs has profoundly shaped eukaryotic complexity, enabling fine-tuned control over transcription, post-transcriptional processing, and genome organization.^[1] For instance, miRNAs regulate up to 60% of human genes by binding to 3' untranslated regions of mRNAs,^[5] while lncRNAs like MALAT1 influence alternative splicing and cancer progression through interactions with nuclear speckles.^[6] Dysregulation of ncRNAs is linked to numerous diseases, including cancers (e.g., overexpression of oncogenic lncRNAs), neurological disorders (e.g., lncRNA involvement in Alzheimer's), and genetic syndromes (e.g., miRNA mutations in congenital defects).^[1] Historically, ncRNAs were first recognized in the 1960s with the identification of transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs) as non-coding components of the translation machinery, but their regulatory potential emerged prominently in the 1990s with the discovery of lin-4 miRNA in C. elegans.^[1] Advances in high-throughput sequencing have since revealed thousands of ncRNA loci, highlighting their evolutionary conservation and therapeutic promise, such as using antisense oligonucleotides to target disease-associated ncRNAs.^[4]

Definition and Classification

Definition and Characteristics

Non-coding RNAs (ncRNAs) are functional RNA transcripts that do not encode proteins but instead perform diverse regulatory roles within cells.^[4] These molecules represent the majority of the eukaryotic transcriptome, accounting for approximately 98% of all transcriptional output in humans.^[2] Unlike protein-coding messenger RNAs (mRNAs), ncRNAs lack substantial open reading frames (ORFs) and thus evade ribosomal translation.^[7] A defining feature of ncRNAs is their structural and functional diversity, spanning a broad size range from small ncRNAs under 200 nucleotides to long ncRNAs over 200 nucleotides in length.^[4] Many ncRNAs achieve enhanced stability through chemical modifications, such as 2'-O-methylation, which rigidifies the ribose sugar conformation and protects against nuclease degradation.^[8] In contrast to mRNAs, which are typically equipped with a 5' 7-methylguanosine cap and a 3' poly-A tail to support export, stability, and translation, ncRNAs frequently omit these elements, enabling their direct participation in cellular regulation rather than serving as protein templates.^[9]^[10] Evolutionary analyses reveal that numerous ncRNAs exhibit conservation of sequence and secondary structure across species, signaling their essential biological roles.^[11] In humans, this abundance is exemplified by over 100,000 long ncRNAs (with GENCODE annotating approximately 35,900 lncRNA genes and over 170,000 transcripts as of 2025) alongside approximately 2,654 mature microRNAs (as per miRBase v22, the latest release), highlighting the genomic scale of non-coding transcription.^[4]^[12]^[13]

Major Types of ncRNAs

Non-coding RNAs (ncRNAs) exhibit remarkable diversity, primarily categorized by their length, structure, and biogenesis pathways into small ncRNAs (generally under 200 nucleotides), long ncRNAs (over 200 nucleotides), circular RNAs, and other specialized classes.^[1] This classification highlights their varied roles in cellular processes, though detailed functions are explored elsewhere. Small ncRNAs, often involved in precise regulatory mechanisms, include several well-defined subclasses. MicroRNAs (miRNAs) are single-stranded RNAs approximately 21-25 nucleotides in length that primarily mediate post-transcriptional gene silencing by binding to target mRNAs.^[1] Small interfering RNAs (siRNAs), similar in size to miRNAs, arise from either endogenous double-stranded RNA precursors or exogenous sources like viral RNAs and facilitate RNA interference to degrade target transcripts.^[14] PIWI-interacting RNAs (piRNAs), typically 24-32 nucleotides long, are predominantly expressed in germline cells where they associate with PIWI proteins to silence transposable elements and maintain genome stability.^[1] Small nucleolar RNAs (snoRNAs), ranging from 60 to 300 nucleotides, guide chemical modifications such as methylation and pseudouridylation on ribosomal RNAs (rRNAs) and other stable RNAs within the nucleolus.^[14] Long non-coding RNAs (lncRNAs), exceeding 200 nucleotides, represent a heterogeneous group transcribed mainly by RNA polymerase II and implicated in broad regulatory processes like chromatin remodeling and cellular signaling.^[4] Subclasses include enhancer RNAs (eRNAs), which are short, bidirectional transcripts from enhancer regions that promote gene activation, and promoter-associated RNAs, which influence transcriptional initiation at promoter sites.^[4] Circular RNAs (circRNAs) form covalently closed, single-stranded loops through back-splicing of pre-mRNA exons, rendering them highly stable due to resistance to exonuclease degradation.^[15] These structures, often abundant in eukaryotic cells, can function as molecular sponges sequestering miRNAs and thereby modulating their availability.^[15] Among other ncRNAs, transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs) serve essential housekeeping functions in protein synthesis, with tRNAs decoding mRNA codons and rRNAs forming the core of ribosomes.^[16] Ribozymes, catalytic ncRNAs capable of self-cleavage or ligation, exemplify RNA's enzymatic potential and are found in various biological contexts, including viral genomes and cellular processing pathways.^[16] Biogenesis of ncRNAs varies by class; for instance, miRNAs and siRNAs typically require the endonuclease Dicer for processing double-stranded precursors into mature forms, while most lncRNAs and miRNA primary transcripts are generated via RNA polymerase II transcription.^[17] Recent discoveries have expanded the ncRNA repertoire to include emerging classes such as tRNA-derived small RNAs (tsRNAs), which are fragments cleaved from mature or precursor tRNAs and regulate gene expression independently of the RNA-induced silencing complex.^[18] Similarly, small RNA fragments like ribosomal RNA-derived small RNAs (srRNAs) have been identified as functional regulators in stress responses and development.^[1]

History of Discovery

Early Observations

The earliest observations of non-coding RNAs emerged in the mid-20th century during investigations into protein synthesis, revealing RNA molecules that did not encode proteins but were indispensable for translation. In the 1950s, Francis Crick proposed the adaptor hypothesis, suggesting the existence of small RNA molecules that would serve as intermediaries to link amino acids to the nucleotide sequence of messenger RNA, thereby facilitating accurate polypeptide assembly without themselves being translated.^[19] Concurrently, ribosomal RNA (rRNA) was identified as a key structural and functional component of ribosomes, the cellular machinery for protein synthesis, with early characterizations in the 1930s and 1940s confirming its non-coding nature as it constituted the bulk of ribosomal mass without contributing to the amino acid sequence.^[20] These discoveries established tRNA and rRNA as essential non-translated RNAs, laying the groundwork for recognizing RNA's multifaceted roles beyond mere informational transfer. Key experiments in the 1960s further illuminated the non-coding properties of tRNAs. The first complete nucleotide sequence of yeast alanine tRNA, determined by Robert W. Holley and colleagues in 1965, demonstrated a cloverleaf secondary structure with no open reading frame capable of encoding a protein, confirming its role solely as an adaptor in translation.^[21] This sequencing effort, which involved enzymatic digestion and chromatographic analysis of fragments, provided direct evidence that tRNAs functioned through base-pairing with mRNA and amino acid attachment sites, rather than translation into polypeptides. Early studies on bacteriophage lambda also hinted at regulatory RNAs, with observations of transcription patterns suggesting non-coding transcripts that modulated gene expression during viral development, though their mechanisms remained unclear at the time.^[22] The 1970s and early 1980s brought pivotal insights into catalytic capabilities of non-coding RNAs, transforming perceptions of RNA functionality. Sidney Altman's group identified ribonuclease P (RNase P) in Escherichia coli as an enzyme processing tRNA precursors, with a 1978 study revealing that its RNA subunit was essential for catalytic activity, marking the first demonstration of RNA acting as a biocatalyst independent of protein.^[23] Shortly thereafter, in 1982, Thomas Cech's laboratory reported self-splicing of the Tetrahymena ribosomal RNA intron, where the RNA itself excised the intervening sequence without protein assistance, establishing the concept of ribozymes and expanding RNA's enzymatic repertoire.^[24] By the 1980s, additional classes of non-coding RNAs were recognized for their regulatory roles in eukaryotic and prokaryotic systems. Small nuclear RNAs (snRNAs), first isolated in the 1960s but functionally characterized in the early 1980s, were shown to form ribonucleoprotein particles (snRNPs) integral to the spliceosome, as evidenced by immunoprecipitation experiments linking U1 snRNP binding to splice sites in heterogeneous nuclear RNA.^[25] In bacteria, antisense RNAs emerged as regulators, with early 1980s discoveries in plasmids and phages demonstrating their ability to base-pair with target mRNAs to inhibit translation or promote degradation, as seen in systems like the ColIb plasmid copy number control.^[26] These findings prompted a conceptual shift in molecular biology, moving away from viewing non-coding RNAs as inert "junk" byproducts—echoing earlier dismissals of non-genic transcripts—to acknowledging them as active, functional molecules that challenged the central dogma's protein-centric focus. The ribozyme discoveries, in particular, underscored RNA's ancient catalytic potential, suggesting it predated proteins in evolutionary history and broadening the scope of genetic regulation.^[16]

Modern Advances and Milestones

The discovery of the first microRNA (miRNA), lin-4, in 1993 by Victor Ambros and Gary Ruvkun in the nematode Caenorhabditis elegans marked a pivotal moment in ncRNA research, demonstrating its role in post-transcriptional gene regulation through antisense complementarity to the 3' untranslated region of the lin-14 mRNA. This finding was recognized with the 2024 Nobel Prize in Physiology or Medicine.^[27] This finding challenged the prevailing view that gene regulation primarily occurred at the transcriptional level and opened avenues for understanding small ncRNAs as temporal regulators of development. In the 2000s, the Human Genome Project's completion in 2001 revealed that only about 1-2% of the human genome encodes proteins, prompting intensive efforts to characterize the vast non-coding portions and their functional RNAs. This genomic insight spurred hunts for ncRNAs, highlighting their abundance and potential regulatory roles beyond protein-coding genes. Concurrently, the elucidation of small interfering RNA (siRNA)-mediated RNA interference (RNAi) by Andrew Fire and Craig Mello in 1998, recognized with the 2006 Nobel Prize in Physiology or Medicine, demonstrated how double-stranded RNAs could trigger sequence-specific gene silencing, revolutionizing tools for ncRNA functional studies. The 2010s saw the ENCODE project's 2012 phase annotate over 9,000 long non-coding RNA (lncRNA) loci through integrative analysis of chromatin states, transcription, and RNA expression, establishing lncRNAs as a major class of functional ncRNAs with tissue-specific patterns. This effort, combined with GENCODE annotations, cataloged thousands of lncRNAs, revealing their evolutionary conservation and association with regulatory elements. Simultaneously, high-throughput RNA sequencing (RNA-seq) in the 2010s fueled a discovery boom for circular RNAs (circRNAs), identifying them as abundant, stable transcripts formed by back-splicing, often derived from exons and enriched in neural tissues. Seminal studies using RNA-seq detected tens of thousands of circRNAs across species, underscoring their prevalence and potential as miRNA sponges or regulatory elements. In the 2020s, single-cell RNA-seq has illuminated ncRNA dynamics during development, capturing heterogeneous expression patterns of miRNAs, lncRNAs, and circRNAs at cellular resolution to reveal stage-specific regulatory networks in processes like embryogenesis and tissue differentiation. For instance, analyses in human brain development have shown lncRNAs modulating cell fate transitions through precise spatiotemporal expression. CRISPR-based editing of ncRNAs advanced significantly, with 2023 studies developing targeted knockouts for lncRNAs that minimize off-target effects on nearby genes, enabling functional validation of their roles in cellular processes.^[28] Technological advances have further propelled ncRNA research, including deep sequencing for comprehensive transcriptome profiling and cross-linking immunoprecipitation sequencing (CLIP-seq) variants like iCLIP, which map protein-ncRNA binding sites at nucleotide resolution to uncover interaction networks. By 2024, artificial intelligence integrations, such as AlphaFold 3 adaptations for RNA, have enabled accurate predictions of ncRNA secondary and tertiary structures, facilitating modeling of their interactions with proteins and other molecules without relying solely on experimental data.^[29] Recent advances in epitranscriptomics from 2024 to 2025 have further illuminated the role of N6-methyladenosine (m6A) modifications on ncRNAs, influencing their stability, localization, and interactions, as evidenced by studies showing m6A readers like YTHDF2 promoting lncRNA decay to fine-tune gene expression. These modifications integrate ncRNAs into dynamic regulatory circuits, with recent mappings revealing m6A sites on circRNAs that affect their biogenesis and function in stress responses.^[30]

Biogenesis and Structural Features

Transcription and Processing Mechanisms

Non-coding RNAs (ncRNAs) are transcribed by the three major eukaryotic RNA polymerases, with specificity determined by promoter elements and the functional class of the ncRNA. Ribosomal RNAs (rRNAs) are primarily synthesized by RNA polymerase I (Pol I) in the nucleolus, producing large precursor transcripts that undergo extensive processing to form mature 18S, 5.8S, and 28S rRNAs. Transfer RNAs (tRNAs) and small nuclear RNAs (snRNAs) are typically transcribed by RNA polymerase III (Pol III), which generates short transcripts with internal promoters and terminates at poly-T sequences, resulting in uncapped, non-polyadenylated RNAs. In contrast, microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) are predominantly transcribed by RNA polymerase II (Pol II), incorporating a 5' 7-methylguanosine cap and often a 3' poly-A tail, similar to messenger RNAs (mRNAs), which enhances their stability and nuclear export.^[4]^[17] Processing of ncRNAs varies by length and class, with small ncRNAs generally requiring endonucleolytic cleavage for maturation, while long ncRNAs follow mRNA-like pathways but exhibit greater diversity. For miRNAs, the primary transcript (pri-miRNA) is cleaved in the nucleus by the Drosha-DGCR8 microprocessor complex to form the precursor miRNA (pre-miRNA), a ~70-nucleotide hairpin, which is then exported to the cytoplasm and further processed by Dicer into a ~22-nucleotide mature miRNA duplex that loads into the Argonaute protein of the RNA-induced silencing complex. LncRNAs undergo splicing by the spliceosome akin to mRNAs, involving recognition of 5' and 3' splice sites, branch point formation, and exon ligation, though many retain introns or display alternative splicing patterns that contribute to isoform diversity and functional specificity. Small ncRNAs like tRNAs and snRNAs are processed through endonucleolytic trimming by RNase P and Z for tRNAs, or via the SMN complex for snRNA assembly into ribonucleoproteins, whereas lncRNAs are often polyadenylated by the canonical cleavage and polyadenylation specificity factor (CPSF) complex to promote stability and prevent degradation.^[31]^[17]^[32] Certain ncRNA classes guide post-transcriptional modifications on target RNAs, including rRNAs and snRNAs. C/D box small nucleolar RNAs (snoRNAs) direct 2'-O-methylation of ribose moieties via base-pairing with target RNAs, recruiting the fibrillarin (FBL) methyltransferase core protein; for example, the U85 snoRNA guides methylation at C45 of U5 snRNA. H/ACA box snoRNAs facilitate pseudouridylation by forming a four-way junction structure that positions the dyskerin (DKC1) complex to isomerize uridines, as seen in modifications of 18S rRNA at multiple sites. These modifications stabilize RNA structures and fine-tune ribosome function, with over 100 such sites identified in human rRNAs. Circular RNAs (circRNAs), a subclass of lncRNAs, form through back-splicing mechanisms, including lariat intermediates from spliceosomal intron excision or direct intron pairing via complementary Alu repeats, which juxtapose splice sites and yield covalently closed loops resistant to exonucleases.^[33]^[34]30509-4.pdf) Quality control mechanisms ensure the fidelity of ncRNA maturation and eliminate aberrant transcripts. The RNA exosome, a 3'-5' exoribonucleolytic complex comprising the core DIS3 and RRP6 subunits, degrades improperly processed ncRNAs, such as promoter upstream transcripts (PROMPTs) and cryptic unstable transcripts (CUTs), preventing their accumulation and potential interference with gene expression. Nuclear export of mature ncRNAs relies on karyopherin family exportins; for instance, Exportin-5 (XPO5) specifically recognizes the two-nucleotide 3' overhang of pre-miRNAs to facilitate Ran-GTP-dependent translocation through nuclear pores, while Exportin-4 (XPO4) mediates export of select circRNAs exceeding ~100 nucleotides. These pathways highlight length-specific adaptations: small ncRNAs (<200 nucleotides) depend on precise cleavage and exportin-mediated shuttling for rapid function, whereas long ncRNAs (>200 nucleotides) leverage polyadenylation and alternative splicing for enhanced stability and nuclear retention in some cases.00490-0)^[35]^[36]

Common Structural Motifs

Non-coding RNAs (ncRNAs) exhibit a variety of secondary and tertiary structural motifs that are essential for their stability, interactions, and functional specificity. These motifs often arise from base-pairing patterns that fold the RNA into compact architectures, enabling recognition by proteins or other RNAs. Common secondary structures include stem-loops and hairpins, while tertiary elements like pseudoknots and G-quadruplexes provide higher-order folding critical for catalysis or binding.^[37] In microRNAs (miRNAs), the precursor (pre-miRNA) adopts a characteristic stem-loop secondary structure, typically 60-80 nucleotides long with a 2-nucleotide 3' overhang, which facilitates loading into the RNA-induced silencing complex (RISC) by allowing recognition and processing by Dicer and Argonaute proteins.^[38] Similarly, small nucleolar RNAs (snoRNAs) feature a conserved hairpin-hinge-hairpin-tail secondary structure, where the hairpins position antisense sequences to guide site-specific modifications such as 2'-O-methylation or pseudouridylation on ribosomal or spliceosomal RNAs.^[39] For small interfering RNAs (siRNAs), the double-stranded regions of their precursors are recognized by Dicer, which cleaves them into ~21-23 nucleotide duplexes based on the helical geometry and end structures, enabling subsequent RISC incorporation.^[40] Tertiary motifs further enhance ncRNA functionality through intricate folds. In ribozymes, pseudoknots—where a single-stranded region pairs with a discontinuous stem—stabilize active conformations for catalysis, as seen in the GlmS ribozyme's double pseudoknot architecture that positions the substrate for glucosamine-6-phosphate-mediated self-cleavage.^[41] Kink-turns (K-turns), sharp ~120-degree bends formed by tandem sheared G-A base pairs flanked by helices, contribute to catalytic competence in certain ribozymes by facilitating tertiary contacts, such as in variants of the hammerhead ribozyme where they aid in active site assembly.^[42] In long non-coding RNAs (lncRNAs), G-quadruplexes—stacks of G-tetrads stabilized by monovalent cations—promote structural stability and regulate localization, exemplified by conserved G-quadruplex motifs in NEAT1 that recruit the protein NONO to paraspeckles.^[43] Class-specific features highlight adaptations in ncRNA architecture. Circular RNAs (circRNAs) form covalently closed loops via back-splicing, lacking free ends and thus resisting exonucleolytic degradation, which confers half-lives up to 10-fold longer than linear counterparts and supports sustained regulatory roles.^[44] PIWI-interacting RNAs (piRNAs) in clusters exhibit structural bases for ping-pong amplification, where antisense piRNAs with a 10A bias at the 5' end pair with sense transcripts, enabling Zucchini-mediated cleavage and secondary piRNA production from the 3' fragment to amplify transposon silencing signals.00660-6) Computational tools predict these motifs by minimizing free energy or analyzing evolutionary signals. Algorithms like mfold and ViennaRNA employ dynamic programming to compute minimum free energy secondary structures, incorporating thermodynamic parameters for base-pairing and stacking to model stem-loops and hairpins in ncRNAs.^[45]^[46] Evolutionary covariation—correlated substitutions maintaining base pairs across homologs—identifies conserved motifs by scoring alignment compatibility, distinguishing functional structures from random folds with higher sensitivity at helix resolution.^[47] These structural elements create functional interfaces, such as binding pockets for protein partners. In miRISC, the miRNA guide strand anchors in Argonaute-2's PIWI domain via a nucleic acid-binding cleft, where the seed region (positions 2-8) positions for target mRNA recognition, enabling precise silencing.^[48] Overall, such motifs underscore how ncRNA architecture dictates molecular interactions without protein-coding potential.

Biological Roles

Gene Regulation

Non-coding RNAs (ncRNAs) play pivotal roles in regulating gene expression at the transcriptional and epigenetic levels, influencing chromatin architecture, promoter activity, and histone modifications to control when and where genes are activated or silenced. Long non-coding RNAs (lncRNAs) and other ncRNA classes, such as enhancer RNAs (eRNAs) and PIWI-interacting RNAs (piRNAs), mediate these processes by interacting with DNA, proteins, and chromatin-modifying complexes, often in a locus-specific manner. This regulation ensures precise spatiotemporal control of gene expression during development, differentiation, and cellular responses.^[49] In transcriptional control, lncRNAs like Xist exemplify cis-acting mechanisms by coating the X chromosome to induce inactivation through chromatin looping and compaction. Xist recruits silencing factors that organize the chromosome into a condensed Barr body, spreading repressive marks over large domains via repeat sequences that facilitate long-range interactions. Complementarily, eRNAs, short bidirectional transcripts from enhancer regions, enhance promoter activity by stabilizing enhancer-promoter loops and recruiting Mediator and cohesin complexes to boost RNA polymerase II (Pol II) recruitment and elongation. For instance, eRNAs can loop enhancers to target promoters, increasing transcription rates by up to several fold in active loci. Epigenetic modulation by ncRNAs involves directing histone and DNA modifications to enforce heritable gene silencing. The lncRNA HOTAIR acts in trans by recruiting the Polycomb Repressive Complex 2 (PRC2) to specific genomic sites, catalyzing trimethylation of histone H3 at lysine 27 (H3K27me3) to repress Hox gene clusters and other targets over distances exceeding 40 kb.^[50] Similarly, piRNAs guide PIWI proteins to transposon loci in germ cells, triggering de novo DNA methylation and H3K9me3 deposition to silence mobile elements and prevent genomic instability. This piRNA-directed pathway establishes methylation patterns during gametogenesis, with piRNA clusters amplifying signals via a ping-pong cycle for robust repression.^[51] ncRNAs operate as cis- or trans-acting regulators, with cis elements exerting local effects near their transcription site and trans elements influencing distant loci. Cis-acting examples include promoter-associated ncRNAs that block Pol II progression or stabilize local chromatin loops, such as those overlapping transcription start sites to fine-tune initiation. In contrast, trans-acting ncRNAs like miRNAs or HOTAIR diffuse to bind multiple targets genome-wide, with miRNAs exemplifying broad repression by base-pairing to mRNA sequences, though their indirect transcriptional effects arise via feedback on regulatory genes.^[49] Feedback loops further amplify control, where ncRNAs transcribed from enhancers contribute to super-enhancer formation, promoting phase separation into liquid-like condensates that concentrate transcription factors and coactivators for bursty, high-level gene activation. These condensates, driven by multivalent interactions, enhance target gene expression by orders of magnitude in cell-type-specific programs.^[52] Quantitative aspects of ncRNA regulation highlight dose-dependent effects, where repression efficiency scales nonlinearly with ncRNA abundance. For miRNA-mediated target repression, models incorporating stoichiometry reveal cooperative binding, often described by Hill coefficient functions with values around 2-4, indicating ultrasensitive responses where small changes in miRNA levels lead to sharp switches in target mRNA stability and translation. This cooperativity ensures threshold-based control, preventing leaky expression in low-ncRNA states.

RNA Processing and Translation

Non-coding RNAs (ncRNAs) are integral to post-transcriptional RNA processing and the control of protein synthesis, influencing mRNA maturation, stability, and translational efficiency. In pre-mRNA splicing, small nuclear RNAs (snRNAs), including U1, U2, U4, U5, and U6, assemble into the spliceosome to recognize splice sites and catalyze intron removal, ensuring accurate exon ligation for functional mRNA production.^[53] These snRNAs form dynamic ribonucleoprotein complexes (snRNPs) that undergo conformational changes during spliceosome activation, with U1 snRNA binding the 5' splice site and U2 snRNA interacting with the branch point to initiate the process.^[54] Small nucleolar RNAs (snoRNAs), such as U85, further enhance splicing fidelity by directing 2'-O-methylation and pseudouridylation modifications on spliceosomal snRNAs like U5, stabilizing their structure and optimizing catalytic activity.^[55] Beyond splicing, ncRNAs regulate mRNA stability through targeted degradation pathways. MicroRNAs (miRNAs) and small interfering RNAs (siRNAs), incorporated into RNA-induced silencing complexes (RISCs), bind to mRNA 3' untranslated regions (UTRs), recruiting deadenylation factors like the CCR4-NOT complex to shorten poly(A) tails, followed by decapping via DCP1/DCP2 and 5'-to-3' exonucleolytic decay by XRN1.^[56] This deadenylation-dependent mechanism accounts for the majority (>66%) of miRNA-mediated repression in mammalian cells, with mRNA destabilization often dominating over direct translational inhibition.^[57] Circular RNAs (circRNAs), a class of covalently closed ncRNAs, function as competing endogenous RNAs (ceRNAs) by sequestering miRNAs through shared binding sites, thereby preventing miRNA-induced deadenylation and stabilizing target mRNAs.^[58] NcRNAs also directly modulate translation initiation and elongation. Transfer RNAs (tRNAs) serve as adaptors that decode mRNA codons by delivering specific amino acids to the ribosome's peptidyl (P) and aminoacyl (A) sites, while ribosomal RNAs (rRNAs) form the structural and catalytic core of the ribosome, facilitating peptide bond formation during elongation.^[59] In addition, ncRNAs influence mRNA export and localization by interacting with splicing factors. The lncRNA MALAT1, retained in nuclear speckles, binds serine/arginine-rich (SR) proteins such as SRSF1 and SRSF3, modulating their phosphorylation and distribution to regulate alternative splicing outcomes and promote nuclear retention of specific pre-mRNAs, thereby controlling their cytoplasmic export.^[60] A representative example is the let-7 miRNA, which represses translation initiation of target mRNAs by associating with Argonaute proteins in miRNPs, interfering with the recruitment of the cap-binding protein eIF4E and disrupting eIF4F complex assembly at the mRNA 5' cap.

Genome Defense and Maintenance

Non-coding RNAs (ncRNAs) play crucial roles in genome defense by countering viral infections through RNA interference pathways. In plants and invertebrates, small interfering RNAs (siRNAs) are generated from viral double-stranded RNA intermediates and guide the RNA-induced silencing complex (RISC) to cleave complementary viral RNA, thereby restricting viral replication.^[61] This mechanism is conserved in animals, where siRNAs similarly mediate antiviral defense against a range of RNA viruses, including those in insects and mammals.^[62] In mammals, endogenous siRNAs (endo-siRNAs) derived from cellular transcripts have a limited role in antiviral defense, primarily in specific cell types like oocytes, where they contribute to transposon control and occasionally modulate viral responses, though interferon pathways predominate.^[63] NcRNAs are essential for silencing transposable elements (TEs), mobile genetic invaders that threaten genome integrity. Piwi-interacting RNAs (piRNAs), a class of 24-32 nucleotide ncRNAs, predominate in animal gonads, where they associate with PIWI proteins to form complexes that repress TE activity through both post-transcriptional cleavage and transcriptional silencing.^[64] This piRNA pathway operates via nuage bodies, cytoplasmic granules in germ cells that facilitate piRNA biogenesis and amplify silencing signals, ensuring TE suppression during gametogenesis.^[65] Additionally, long non-coding RNAs (lncRNAs) guide DNA methylation to heterochromatic regions, promoting TE immobilization by recruiting methyltransferases and establishing repressive chromatin marks.^[66] In DNA replication and telomere maintenance, ncRNAs regulate processes to prevent genomic instability. Telomeric repeat-containing RNA (TERRA), a lncRNA transcribed from subtelomeric promoters, accumulates at chromosome ends and stabilizes telomerase activity by interacting with the enzyme's RNA component (hTR), facilitating telomere elongation in human cells.^[67] TERRA also modulates RNA:DNA hybrids known as R-loops at telomeres, where these structures can either promote replication fork progression or, if unregulated, lead to replication stress; ncRNAs like TERRA help resolve such hybrids to maintain telomeric integrity.^[68] Dysregulated R-loops elsewhere in the genome are countered by ncRNAs that recruit helicases and ribonucleases, preventing persistent hybrids that could cause replication stalling and mutations.^[69] NcRNAs contribute to chromosome structure by organizing heterochromatin domains. The lncRNA Xist coats the X chromosome in female mammals, spreading from its locus to envelop the entire territory, which triggers histone modifications and chromatin compaction essential for X-chromosome inactivation and dosage compensation.^[70] This coating mechanism relies on Xist's repeat domains, which recruit silencing factors like PRC2 to enforce stable heterochromatin.^[71] Similarly, satellite II RNAs transcribed from pericentromeric regions interact with heterochromatin proteins such as HP1 to stabilize pericentromeric heterochromatin, promoting higher-order chromatin folding and centromere function during mitosis.^[72] In DNA repair pathways, lncRNAs facilitate the recruitment of repair factors to sites of double-strand breaks (DSBs). For instance, lncRNAs such as DINO and WRAP53 act as scaffolds, binding and localizing proteins like 53BP1 and BRCA1 to DSBs, thereby promoting non-homologous end joining or homologous recombination as appropriate.^[73] These ncRNAs enhance repair efficiency by modulating chromatin accessibility and coordinating protein assemblies at break sites, reducing the risk of genomic rearrangements.^[74]

Specialized Cellular Functions

Non-coding RNAs (ncRNAs) exhibit specialized functions in cellular signaling pathways, exemplified by the steroid receptor RNA activator (SRA), a long non-coding RNA (lncRNA) that modulates nuclear receptor activity in a manner akin to hormone signaling. SRA enhances steroid receptor-dependent gene expression by coordinating the functions of various transcription factors and promoting alternative splicing events.^[75] As a selective coactivator, SRA interacts with the amino-terminal activation function of steroid hormone receptors, facilitating transactivation without encoding a protein itself.^[76] This RNA-mediated regulation allows SRA to fine-tune responses to steroid hormones, influencing processes such as cell proliferation and differentiation in hormone-responsive tissues.^[77] In prokaryotes, ncRNAs contribute to pathogen evasion strategies through environmental sensing, as seen with the small RNA (sRNA) RyhB in bacteria like Escherichia coli. RyhB senses iron availability and downregulates iron-storage and iron-using proteins during limitation, thereby optimizing resource allocation for survival in iron-scarce host environments.^[78] This iron-sparing response, regulated by the ferric uptake regulator (Fur), interlinks homeostasis with virulence, enabling pathogens to evade host immune mechanisms that exploit iron withholding.^[79] For instance, RyhB homologs in fish pathogens like Edwardsiella tarda similarly control iron-responsive genes, enhancing persistence during infection.^[80] Such mechanisms underscore the role of bacterial sRNAs in adaptive strategies against host defenses.^[81] Certain ncRNAs display bifunctionality, serving dual roles as regulators and structural scaffolds, with the 7SK small nuclear RNA (snRNA) providing a prominent example in eukaryotic transcription control. 7SK sequesters positive transcription elongation factor b (P-TEFb), comprising CDK9 and cyclin T, within the 7SK small nuclear ribonucleoprotein (snRNP) complex, thereby inhibiting its kinase activity and promoting promoter-proximal pausing of RNA polymerase II (Pol II).^[82] This inhibition, mediated by HEXIM1 binding to 7SK, prevents premature elongation and ensures precise gene expression timing.^[83] Simultaneously, 7SK facilitates Pol II pausing at gene promoters, acting as a scaffold for the pause-release machinery upon cellular signals, thus balancing transcriptional output.^[84] Dysregulation of this bifunctional role can disrupt elongation control, highlighting 7SK's integral position in transcriptional fidelity.^[85] Mitochondrial ncRNAs (mito-ncRNAs), including mitomiRs and lncRNAs, specialize in regulating energy metabolism within organelles. These RNAs modulate mitochondrial respiration and glycolysis by targeting nuclear-encoded mitochondrial genes, thereby influencing ATP production and cellular energy homeostasis.^[86] For example, mito-ncR-805 exerts protective effects by positively regulating mitochondrial energy metabolism during stress, enhancing oxidative phosphorylation efficiency.^[87] MitomiRs, such as those derived from mitochondrial DNA, further control mitochondrial function by altering the expression of metabolic enzymes, ensuring adaptive responses to bioenergetic demands.^[88] This specialized regulation is critical for maintaining mitochondrial integrity in high-energy tissues like the heart.^[89] Recent studies (as of 2025) have revealed additional roles for circular RNAs (circRNAs) as scaffolds for protein complexes in cellular signaling and biomolecular condensates, enhancing their regulatory diversity in development and stress responses.^[4] Beyond these, ncRNAs participate in cell cycle checkpoints and stress granule (SG) assembly, providing checkpoints for cellular fidelity under duress. LncRNAs such as LINC00152 regulate mitotic progression by influencing spindle assembly and chromosome segregation, enforcing G2/M checkpoint integrity in human cells.^[90] Similarly, lncRNAs like MALAT1 modulate G1/S transition by altering expression of cyclins and CDK inhibitors, preventing unscheduled proliferation.^[91] In stress responses, lncRNAs including SNHG8 drive SG formation by interacting with RNA-binding proteins like G3BP1, sequestering non-translating mRNPs to protect transcripts during oxidative or thermal stress.^[92] Non-coding RNAs also contribute to SG nucleation through RNA-RNA interactions and self-assembly, enriching cytoplasmic granules with regulatory elements that facilitate mRNA triage and translational repression.^[93] These functions highlight ncRNAs' versatility in safeguarding cellular processes amid perturbations.^[94]

Roles in Disease

Cancer

Non-coding RNAs (ncRNAs) play pivotal roles in cancer by acting as oncogenes or tumor suppressors, influencing tumorigenesis through diverse regulatory mechanisms. Oncogenic ncRNAs, such as the long non-coding RNA (lncRNA) MALAT1, promote cancer progression and metastasis. MALAT1 is highly expressed in various cancers, including lung and breast, where it regulates alternative splicing by modulating serine/arginine splicing factors, thereby enhancing cell motility and invasive potential. For instance, in lung cancer, MALAT1 depletion impairs metastasis without significantly altering global splicing patterns, underscoring its role in fine-tuning pro-metastatic gene expression. Similarly, the microRNA miR-21 functions as an oncomiR by targeting tumor suppressor genes like PTEN and PDCD4, leading to increased cell proliferation and survival in cancers such as breast and colorectal. Overexpression of miR-21 is commonly observed in many solid tumors, correlating with advanced disease stages and poor prognosis. In contrast, tumor-suppressive ncRNAs counteract oncogenic processes. The miR-34 family, transcriptionally activated by p53, induces apoptosis and cell cycle arrest in multiple cancers, including neuroblastoma and pancreatic cancer, by downregulating targets like BCL2 and CDK4/6. Loss of miR-34 expression is linked to chemoresistance, as it diminishes p53-mediated apoptotic responses. Circular RNAs (circRNAs) can also exert suppressive effects by sponging oncogenic miRNAs; for example, certain circRNAs sequester miR-21 to alleviate its pro-proliferative actions, though ciRS-7 exemplifies a circRNA that sponges the tumor-suppressive miR-7, indirectly promoting oncogenesis in contexts like esophageal cancer by derepressing miR-7 targets involved in proliferation. Mechanisms of ncRNA involvement in cancer include epigenetic silencing of tumor suppressors and modulation of key signaling pathways. LncRNAs and miRNAs often recruit epigenetic modifiers, such as DNMT3A, to hypermethylate promoters of genes like PTEN, thereby silencing tumor suppressors and facilitating tumor growth in cancers including ovarian and colorectal. Recent studies highlight ncRNA regulation of the PI3K/Akt pathway, a central oncogenic axis; for instance, lncRNAs like H19 activate PI3K/Akt to enhance glycolysis and invasion in hepatocellular carcinoma, while miRNAs such as miR-126 inhibit it to suppress metastasis in lung cancer. Investigations from 2024-2025 emphasize bidirectional ncRNA-PI3K/Akt interactions, with circRNAs also implicated in pathway activation via miRNA sponging. NcRNAs hold promise as diagnostic biomarkers and therapeutic targets in cancer. The lncRNA PCA3 serves as a prostate cancer-specific biomarker, detectable in urine via the Progensa PCA3 assay, which improves detection specificity over PSA alone, aiding in biopsy decisions for patients with elevated PSA levels. Therapeutically, small interfering RNA (siRNA)-based approaches targeting ncRNAs are advancing; while no siRNA drugs are yet approved specifically for cancer as of 2025, investigational siRNAs against oncogenic ncRNAs like STAT3-modulating lncRNAs are in phase II/III trials for solid tumors, showing efficacy in reducing tumor burden when delivered via lipid nanoparticles. Recent advances in single-cell profiling have revealed ncRNA dynamics within tumor microenvironments, identifying miRNA gradients in immune cell interactions that drive immunosuppression in colorectal and breast cancers, as detailed in 2025 reviews. These insights enable precision targeting of ncRNA heterogeneity to overcome therapy resistance.

Neurological and Developmental Disorders

Non-coding RNAs (ncRNAs) play critical roles in the pathogenesis of neurological disorders, particularly through dysregulation that affects synaptic function and protein aggregation. In Alzheimer's disease (AD), the long non-coding RNA (lncRNA) BACE1-AS stabilizes the mRNA of beta-secretase 1 (BACE1), an enzyme essential for cleaving amyloid precursor protein to produce amyloid-beta (Aβ) peptides, thereby promoting Aβ accumulation and plaque formation.^[95] This stabilization occurs via RNA duplex formation between BACE1-AS and BACE1 mRNA, which enhances BACE1 expression under cellular stress conditions prevalent in AD brains.^[96] Additionally, deficits in microRNA-132 (miR-132) contribute to tau pathology by failing to suppress inositol 1,4,5-trisphosphate 3-kinase B (ITPKB), leading to exacerbated tau hyperphosphorylation and neurofibrillary tangle formation in AD mouse models and human patients.^[97] Restoring miR-132 expression has been shown to mitigate Aβ-induced tauopathy and improve neuronal survival, highlighting its neuroprotective potential.^[98] In autism spectrum disorder (ASD), ncRNAs influence synaptic plasticity and neurodevelopmental wiring. LncRNA FMR1-AS1, associated with the fragile X mental retardation 1 (FMR1) gene, regulates synaptic protein translation by modulating the activity of fragile X mental retardation protein (FMRP), a key repressor of mRNA translation at synapses; its dysregulation disrupts dendritic spine morphology and long-term potentiation, core features of ASD.^[99] Copy number variations (CNVs) affecting miRNA clusters, such as those involving MIR590, MIR944, and MIR3618, are enriched in ASD genomes and alter the expression of genes critical for neuronal connectivity and excitatory-inhibitory balance.^[100] These CNV-associated miRNAs target pathways like synaptic scaffolding and chromatin remodeling, contributing to the heterogeneity of ASD phenotypes observed in genetic studies.^[101] Beyond specific disorders, ncRNAs are integral to developmental processes in the nervous system. MicroRNAs such as let-7, miR-124, and miR-9 act as master regulators of neuronal differentiation by promoting the transition from neural progenitors to mature neurons through post-transcriptional suppression of proliferation genes and enhancement of neuronal-specific transcripts.^[102] For instance, miR-124 facilitates dendrite morphogenesis by repressing non-neuronal targets, ensuring proper arborization during cortical development.^[103] In broader developmental contexts, lncRNAs like Upperhand demonstrate how ncRNA transcription can control tissue-specific gene expression; originally identified in 2016 for regulating Hand2 in heart development. Dysregulation of these ncRNAs during embryogenesis can lead to neurodevelopmental delays, underscoring their role in establishing neural circuits. Mechanistically, ncRNAs mediate key aspects of neuronal vulnerability in disorders. LncRNAs such as durga influence dendrite morphogenesis by localizing to dendritic compartments and modulating actin cytoskeleton dynamics, which is disrupted in neurodevelopmental conditions like ASD.^[104] In excitotoxicity, a process implicated in AD and stroke-related neurodegeneration, miR-107 regulates glutamate receptor subunit expression to prevent excessive calcium influx and neuronal death following glutamate overload.^[105] This regulation helps maintain synaptic homeostasis, and its impairment amplifies inflammatory cascades in affected brains. Recent studies as of 2025 have linked ncRNA dysregulation to exacerbated neurological disorders via COVID-19-induced neuroinflammation. LncRNAs like those in the NEAT1 family promote microglial activation and cytokine release in response to SARS-CoV-2, worsening tau aggregation and synaptic loss in long COVID patients with preexisting vulnerabilities.^[106] MiRNAs, including miR-155, are upregulated in cerebrospinal fluid during post-COVID neuroinflammation, contributing to blood-brain barrier disruption and heightened risk for AD-like pathologies.^[107] These findings suggest ncRNAs as potential biomarkers and therapeutic targets for mitigating infection-triggered neurological sequelae.

Genetic and Metabolic Syndromes

Non-coding RNAs (ncRNAs) play critical roles in genetic and metabolic syndromes, particularly through dysregulation of imprinting and ribosome biogenesis pathways. In imprinted disorders, ncRNAs mediate allele-specific gene silencing, contributing to phenotypes such as growth abnormalities and metabolic imbalances. For instance, long non-coding RNAs (lncRNAs) like Airn in mice establish paternal imprinting of Igf2r by overlapping transcription with the Igf2r gene, preventing its expression on the paternal allele without requiring the mature lncRNA product itself. This mechanism highlights how ncRNA transcription, rather than the RNA molecule, can recruit repressive complexes to enforce imprinting. Prader-Willi syndrome (PWS), a genetic disorder characterized by hypotonia, intellectual disability, and hyperphagia leading to obesity, arises from loss of paternal expression in the 15q11.2-q13 region, including the SNORD116 cluster of small nucleolar RNAs (snoRNAs). Deletion or mutation of the paternal SNORD116 locus disrupts regulation of food intake and body weight, as evidenced by mouse models lacking Snord116 that exhibit increased energy expenditure, postnatal growth retardation, and hyperphagia mimicking PWS symptoms. These C/D box snoRNAs guide 2'-O-methylation of ribosomal RNAs and other targets, and their absence alters hypothalamic function, confirming SNORD116's essential role in the syndrome's metabolic phenotype.^[108]^[109] Cartilage-hair hypoplasia (CHH), an autosomal recessive metaphyseal dysplasia, results from mutations in the RMRP gene encoding the RNA component of the RNase MRP endoribonuclease complex, a non-coding RNA involved in multiple cellular processes including ribosome biogenesis. These mutations impair pre-rRNA cleavage at sites A0, A1, and A3, leading to defective 5.8S rRNA maturation and reduced 40S ribosomal subunit production, which manifests as short stature, fine hair, and skeletal abnormalities due to disrupted chondrocyte proliferation in the growth plate. In CHH patient fibroblasts, RMRP variants cause inefficient promoter activity and RNA instability, further exacerbating ribosome assembly defects and immune dysfunction.^[110]^[111] Beyond direct genetic syndromes, ncRNAs influence metabolic conditions like non-alcoholic fatty liver disease (NAFLD), where lncRNAs regulate lipid homeostasis. For example, lncRNAs such as HULC and MALAT1 promote hepatic steatosis by modulating pathways like PPARγ and SREBP-1c, enhancing de novo lipogenesis and triglyceride accumulation in hepatocytes. Recent reviews highlight over 50 NAFLD-associated lncRNAs that interact with miRNAs or transcription factors to dysregulate cholesterol efflux and fatty acid oxidation, positioning them as potential biomarkers and therapeutic targets.^[112] snoRNA-guided modifications are implicated in growth plate development disruptions within these syndromes, as seen in CHH where impaired RNase MRP activity indirectly affects rRNA pseudouridylation and methylation, essential for ribosome function in proliferating chondrocytes. This leads to disorganized endochondral ossification and metaphyseal dysplasia, underscoring ncRNAs' role in linking RNA processing to skeletal metabolism.^[113]

Other Pathological Conditions

Mutations in the microRNA miR-96 have been identified as a cause of non-syndromic autosomal dominant progressive hearing loss, known as DFNA50, by disrupting the development and maintenance of sensory hair cells in the inner ear.^[114] These mutations impair miR-96's regulatory role in hair cell differentiation and survival, leading to degeneration of auditory structures and sensorineural hearing impairment that typically begins in adolescence and worsens over time.^[115] In mouse models, miR-96 knockout or point mutations similarly result in cochlear dysfunction, underscoring its conserved function in auditory system maturation.^[116] Mitochondrial tRNA disorders, such as those caused by mutations in the MT-TL1 gene, contribute to mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome by impairing oxidative phosphorylation.^[117] The most common variant, m.3243A>G in MT-TL1, which encodes the mitochondrial tRNA for leucine (tRNA^Leu(UUR)), disrupts tRNA stability and aminoacylation, reducing mitochondrial protein synthesis and ATP production in high-energy tissues like muscle and brain.^[118] This leads to systemic symptoms including myopathy, seizures, and lactic acidosis, with heteroplasmy levels influencing disease severity.^[119] In infectious diseases, non-coding RNAs play critical roles in host-pathogen interactions, where viral miRNAs often evade host immunity by modulating interferon responses and apoptosis pathways.^[120] For instance, viruses such as herpesviruses encode miRNAs that target host transcripts to suppress antiviral signaling, facilitating persistent infection.^[121] In the context of COVID-19, SARS-CoV-2 indirectly exploits host miRNAs and lncRNAs to dysregulate immune evasion, with studies from 2024 linking altered miRNA profiles to exacerbated inflammation and immune suppression during infection.^[122] Long non-coding RNAs (lncRNAs) contribute to autoimmunity in systemic lupus erythematosus (SLE) by promoting type I interferon signaling, a hallmark of the disease.^[123] For example, the lncRNA linc00513 is overexpressed in SLE patients and acts as a positive regulator of the IFN pathway by enhancing STAT1 phosphorylation and interferon-stimulated gene expression, thereby amplifying autoimmune responses.^[124] Similarly, NEAT1 upregulation in granulocytic myeloid-derived suppressor cells boosts IFN-I activation in B cells, contributing to autoantibody production and disease pathogenesis.^[125] Recent 2025 studies have highlighted non-coding RNAs as promising therapeutic targets in inflammatory diseases, with exosomal miRNAs and lncRNAs modulating immune cell communication and cytokine storms in conditions like atopic dermatitis and rheumatoid arthritis.^[126] These investigations emphasize ncRNA-based interventions, such as antisense oligonucleotides targeting dysregulated miRNAs, to attenuate inflammation and restore immune homeostasis.^[127]

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Regulatory role of LncRNA FMR1-AS1 in the pathogenesis ... - Nature
Aug 17, 2025 · Previous studies have shown that FMR1 encodes the Fragile X Messenger Ribonucleoprotein 1 (FMRP), which regulates synaptic protein translation ...
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Decoding microRNAs in autism spectrum disorder - PMC
By analyzing CNV loci of miRNAs in the autism database, several CNV-miRNA were identified, including MIR590, MIR944, MIR3618, and MIR1306. (2) ...
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Autism-associated miR-873 regulates ARID1B, SHANK3 ... - Nature
Dec 1, 2020 · The relationship between gene expression and large copy number variations (CNVs) containing miRNAs has also been linked with ASD. A recent ...
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microRNAs: key triggers of neuronal cell fate - Frontiers
MicroRNAs let-7, microRNA-124, and microRNA-9 have been shown to promote the differentiation of neural stem cells and neural progenitors into specific neural ...
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Regulation of LncRNAs and microRNAs in neuronal development ...
Apr 5, 2023 · In this review, we summarize current knowledge on ncRNA taxonomy, biogenesis, and function, and discuss current research progress on ncRNAs.
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A Novel Long Non-coding RNA, durga Modulates Dendrite Density ...
Apr 9, 2017 · A Novel Long Non-coding RNA, durga Modulates Dendrite Density ... morphogenesis is linked to synaptic plasticity, learning and cognition.
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Emerging Roles of Non-Coding RNA in Neuronal Function and ...
miR-107 has been shown to play a key role in the regulation of excitotoxicity in ischaemic neuronal injury, associated with increased glutamate accumulation ...
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unraveling the role of long non-coding RNAs in COVID-19 ...
Aug 28, 2025 · The regulatory roles of lncRNAs in immune responses and inflammation suggest their potential utility in other infectious and inflammatory ...
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MicroRNAs in long COVID: roles, diagnostic biomarker potential and ...
Altered miRNA expression in Long COVID is linked to persistent inflammation, central nervous system dysfunction, and other chronic complications ...
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Highly restricted deletion of the SNORD116 region is implicated in ...
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Snord116 is critical in the regulation of food intake and body weight
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A disease-linked lncRNA mutation in RNase MRP inhibits ribosome ...
Feb 3, 2022 · Mutations associated with Cartilage Hair Hypoplasia impair pre-rRNA processing. Fibroblasts from CHH patients have reduced growth rates and cell ...
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A comprehensive review of long non-coding RNAs in the ...
Feb 23, 2021 · There is a body of evidence that lncRNAs have a pivotal role in triglyceride, cholesterol, and lipoprotein metabolism. Moreover, lncRNAs by up- ...
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Ribosome biogenesis in disease: new players and therapeutic targets
Jan 9, 2023 · Cartilage Hair Hypoplasia (CHH) is an autosomal recessive disorder caused by mutations of the RNA component of the mitochondrial RNA ...
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Hearing impairment due to Mir183/96/182 mutations suggests both ...
The microRNA miR-96 is important for hearing, as point mutations in humans and mice result in dominant progressive hearing loss. Mir96 is expressed in sensory ...
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A cell type–specific approach to elucidate the role of miR-96 in inner ...
May 8, 2024 · Mutations in microRNA-96 (miR-96), a microRNA expressed within the hair cells (HCs) of the inner ear, result in progressive hearing loss in both mouse models ...Abstract · Background and summary · Results · Discussion
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Targeted genome editing restores auditory function in adult mice ...
Jul 10, 2024 · Mutations in microRNA-96 (MIR96) cause autosomal dominant deafness-50 (DFNA50), a form of delayed-onset hearing loss.
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Melas Syndrome - StatPearls - NCBI Bookshelf - NIH
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MELAS syndrome: Clinical manifestations, pathogenesis, and ...
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Interferon and immunity: the role of microRNA in viral evasion ...
It highlights how viruses can manipulate host cellular pathways, particularly miRNA expression, to evade the immune response.
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Noncoding RNAs in the COVID-19 Saga: An Untold Story
Many viruses have evolved mechanisms that exploit ncRNAs to evade the host immune system. Understanding the regulatory roles of ncRNAs in host immunity during ...
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The relationship between microRNAs and COVID-19 complications
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Identification of LncRNA Linc00513 Containing Lupus-Associated ...
In conclusion, our findings reveal the over expression of linc00513 plays a role in lupus pathogenesis by promoting IFN signaling pathway. SNP variants of ...
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Identification of LncRNA Linc00513 Containing Lupus-Associated ...
We demonstrated that linc00513 was a novel positive regulator of IFN signaling pathway and was responsible for the amplified IFN signaling in SLE patients. Our ...
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LncRNA Expression Profiles in Systemic Lupus Erythematosus and ...
(A) lncRNA NEAT1 is overexpressed in G-MDSCs and induces the promotion of G-MDSCs on IFN-I signaling activation of B cells, contributing to the pathogenesis of ...
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Exosomal non-coding RNAs - Journal of Inflammation
May 14, 2025 · This review synthesizes recent advances in how these ncRNAs orchestrate immune cell communication, modulate inflammatory mediators, and drive ...
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Non-coding RNAs: emerging biomarkers and therapeutic targets in ...
The current review aims to investigate the roles of ncRNAs as potential biomarkers and therapeutic targets in cancer and inflammatory diseases.