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Allen Institute

The Allen Institute is a non-profit bioscience research organization based in Seattle, Washington, founded in 2003 by Paul G. Allen, the late co-founder of , and his sister to accelerate foundational discoveries in biology and advance human health. With a 270,000-square-foot headquarters in Seattle's South Lake Union biotechnology hub, the institute conducts large-scale, open-access , openly sharing data, tools, and resources to catalyze global scientific progress. The institute's work spans several specialized divisions, including the Allen Institute for Brain Science, which maps types and circuits to understand neural function; the Allen Institute for Cell Science, focused on decoding cellular organization and behavior; the Allen Institute for Immunology, investigating dynamics in health and disease; the Paul G. Allen Frontiers Group, which funds innovative, high-risk projects across biosciences; the Seattle Hub for Synthetic Biology, developing cellular recording technologies; and the Brain and Consciousness Program, studying the neural basis of . Additional efforts, such as the Allen Institute for Neural Dynamics established in 2021, explore the computational principles underlying complex behaviors like and . These divisions employ multidisciplinary teams of neuroscientists, cell biologists, immunologists, engineers, and data scientists to tackle fundamental questions in life sciences. Notable achievements include the inaugural Allen Brain Atlas, a comprehensive, three-dimensional gene expression map of the adult mouse brain completed in 2006, which serves as a foundational resource for neuroscience research. The institute's open science approach has influenced studies on conditions like Alzheimer's disease, cancer, and immune disorders, with ongoing projects generating multimodal cell censuses and advanced imaging tools shared freely with the global community. In 2025, the institute launched the Brain Knowledge Platform, integrating 34 million standardized brain cell datasets to accelerate neuroscience research, and the CellScapes initiative to understand fundamental principles of cellular state change. Under the leadership of Board Chair Jody Allen, the Allen Institute continues to drive bold, collaborative science, supported by a mix of philanthropic, government, and private funding.

Overview

Mission and Founding

The Allen Institute is a nonprofit bioscience research organization dedicated to understanding the principles that govern life and advancing through creative, multi-dimensional teams focused on bioscience frontiers. Founded in 2003 by philanthropist Paul G. Allen, co-founder of , and his sister , the institute began with an initial endowment of $100 million specifically targeted at brain science research. From its inception, the Allen Institute emphasized accelerating scientific discovery through large-scale, team-based projects that assemble multidisciplinary experts, contrasting with traditional models reliant on individual grant-funded research. Paul G. Allen's vision for the institute was shaped by his extensive in and , aiming to democratize by producing open-access data resources that enable global collaboration and catalyze breakthroughs in health and disease understanding.

Location and Facilities

The Allen Institute is headquartered in , Washington, at 615 Westlake Avenue North in the South Lake Union neighborhood. This location positions the institute within a vibrant hub, facilitating proximity to academic and industry partners such as the . The institute's facilities include a 270,000-square-foot state-of-the-art headquarters building completed in 2015, with additional leased space of approximately 21,000 square feet in the nearby Dexter Yard life sciences campus since September 2022. This infrastructure includes specialized laboratories for imaging, computation, and animal research, such as wet and dry labs, an electron area, and vertical suites with animal holding rooms and behavioral training spaces on multiple floors. Key amenities encompass advanced suites for techniques like confocal and electron , high-performance computing clusters supported by a dedicated , and collaborative spaces that integrate lab, office, and meeting areas to promote interdisciplinary interactions. In January 2024, the institute launched the Hub for , a collaborative initiative with the and the , utilizing facilities in the South Lake Union area to develop cellular recording technologies. Sustainability is a core aspect of the facilities, with the headquarters achieving Gold certification from the U.S. Council for its energy-efficient design, including abundant natural light, high-performance building systems, and green practices. These features support the institute's long-term operational efficiency while minimizing environmental impact.

History

Establishment

The Allen Institute for Brain Science was launched on September 16, 2003, as the organization's inaugural program, marking the beginning of a nonprofit dedicated to accelerating research through large-scale, open-access initiatives. Founded by philanthropist Paul G. Allen in , the institute aimed to tackle fundamental questions about function by creating comprehensive public resources, starting with an ambitious mapping project. To lead the scientific efforts, the institute recruited Dr. Allan Jones as its founding scientific director, who joined as one of the first employees and oversaw the assembly of an initial team that rapidly expanded to include approximately 75 additional scientists, technologists, and support staff over the ensuing years. This multidisciplinary group was structured around short-term, milestone-driven contracts—initially three years—to ensure focused progress on defined goals, reflecting preference for targeted over open-ended funding. The first major project, the Allen Brain Atlas, sought to create a comprehensive gene expression atlas of the adult mouse brain by mapping the activity of all approximately 20,000 genes across its structure. Supported by a $100 million seed commitment from Paul G. Allen specifically for this three-year endeavor, the project emphasized high-throughput technologies and sharing to produce a three-dimensional, web-accessible resource. Remarkably, the Allen Brain Atlas was completed ahead of schedule and publicly released in September 2006, providing neuroscientists worldwide with a foundational tool that has since been cited thousands of times and integrated into numerous studies. This early success validated the institute's model of team-based, goal-oriented research, setting the stage for future expansions while adhering to the principle of milestone accountability in Allen's broader philanthropic vision, with commitments exceeding $500 million across the institute's programs through additional major gifts for new divisions.

Key Milestones and Expansions

In 2007, the Allen Institute expanded the Allen Brain Atlas with new datasets, including the first cortex data and results from a , enhancing the open-access resource for research. The institute expanded its scope in 2014 with the launch of the Allen Institute for Cell Science, funded by a $100 million commitment from founder Paul G. Allen to develop predictive models of and organization. In 2016, the Paul G. Allen Frontiers Group was established with an initial $100 million investment from Allen, aimed at supporting innovative, high-risk bioscience projects to address fundamental questions in . The Allen Institute for Immunology was formally established in 2018, seeded by a $125 million gift from the late Paul G. Allen, to map and understand dynamics in health and disease. That same year, on October 15, Paul G. Allen passed away from complications of non-Hodgkin's lymphoma at age 65, leading to his sister assuming the role of board chair to guide the institute's ongoing mission. In 2021, the institute established the Allen Institute for Neural Dynamics within its Brain Science division to investigate real-time brain activity, circuits, and behavior, building on earlier mapping efforts with a focus on dynamic processes. By 2023, the MindScope program transitioned into the Brain and Consciousness Program to deepen exploration of neural mechanisms underlying , decision-making, and awareness, while the Hub for was launched in partnership with the and the , committing $75 million collectively to engineer cells as biological recorders for studying disease progression. In 2025, the institute announced its Next Generation Leaders cohort, selecting eight early-career researchers to foster diverse talent in bioscience frontiers through networking, mentorship, and collaborative opportunities over three years.

Research Divisions

Brain Science Division

The Brain Science Division of the Allen Institute, established in 2003 as the institute's foundational program, is dedicated to characterizing types at scale to advance understanding of the 's structure and function. This division employs a multidisciplinary approach integrating , advanced imaging techniques, and computational methods to generate detailed maps of cellular diversity across the . By focusing on molecular and spatial profiling, the division aims to uncover the cellular basis of neural organization, supporting broader insights into and . A cornerstone project is the Allen Brain Cell (ABC) Atlas, which serves as an open platform for visualizing and analyzing single-cell data from the entire mammalian , encompassing both and specimens. This atlas integrates transcriptomic, epigenetic, and spatial datasets to delineate s hierarchically across regions, enabling researchers to explore cellular identities and their distributions. Complementing this, the division has made significant contributions to the Cell Census Network (BICCN), a collaborative effort funded by the NIH to create comprehensive atlases for , , and nonhuman brains. Through BICCN, Allen Institute researchers have led the integration of large-scale datasets from transcriptomics, , and , producing classifications that catalog thousands of types and their properties. Current initiatives extend these mapping efforts to investigate , evolutionary adaptations, and mechanisms via multi-species comparisons, revealing conserved and divergent cellular features across mammals. In April 2025, researchers unveiled the first complete map of an entire mammalian at cellular , led by the Allen Institute in with 21 other institutions. For instance, comparative analyses in the ABC Atlas and BICCN datasets highlight how diversity evolves and how disruptions may contribute to neurological disorders. The division's work adheres to principles, making all data publicly accessible to facilitate global research. The division comprises over 200 scientists, encompassing neuroscientists, engineers, computational biologists, and data specialists organized into specialized teams for projects, imaging, and technology development. This team science model fosters integrated expertise to tackle complex challenges in .

Cell Science Division

The Allen Institute for Cell Science was launched in 2014 with a $100 million commitment from philanthropist Paul G. Allen to advance the understanding of human cell biology. The division's primary aim is to create integrated, predictive models of human cells by studying their behavior in three dimensions and over time, utilizing stem cell-derived models such as induced pluripotent stem cells (iPSCs) to simulate cellular processes in health and disease. This approach seeks to uncover the organizational principles governing cell function, enabling predictions of cellular responses to perturbations relevant to conditions like cancer and . Key projects include the Allen Cell Explorer, an portal that provides interactive visualizations of cellular structures and dynamics in human iPSCs, allowing researchers to explore organization and interactions at high resolution. Another major initiative is the development of comprehensive mitotic datasets, which capture the dynamic changes in 15 key cellular structures across the five stages of using nearly 40,000 high-resolution images from fluorescently tagged lines. These datasets, including computational models and additional , serve as a baseline for studying and its dysregulation in diseases. The 's current focus involves integrating multi-omics data—encompassing , transcriptomics, , and imaging—to predict how s respond to disease states, particularly in cancer and neurodegeneration. This work emphasizes holistic models that link molecular profiles to observable behaviors, facilitating the identification of therapeutic targets. To support the , offers open-access resources such as the & Segmenter, a Python-based toolkit for 3D segmentation of intracellular structures in images using algorithms. Additional tools include software for image analysis, data visualization, and simulation, all freely available to promote reproducible research in .

Immunology Division

The Allen Institute for Immunology was established in 2018 with a $125 million endowment from philanthropist Paul G. Allen to probe the complexities of the human immune system in health and disease. The division employs advanced single-cell technologies to investigate immune cell diversity and intercellular interactions, aiming to uncover fundamental principles that govern immune regulation during infection, , and cancer. By generating comprehensive datasets from healthy individuals and patients, researchers create reference atlases of immune states, such as the Human Immune Health Atlas, which profiles over 16 million peripheral blood immune cells across ages 25 to 90 to establish baselines for variability in immune function. A major focus includes mapping immune responses to , where single-cell analyses reveal distinct patterns of T-cell and B-cell activation that correlate with disease severity and recovery, helping explain why some infections resolve asymptomatically while others lead to severe outcomes or . In autoimmune diseases, the division dissects mechanisms in and (RA) through multi-omic profiling of patient samples, identifying early breakdowns in —such as heightened inflammatory signaling in pre-symptomatic RA individuals—before clinical symptoms emerge, which could enable preventive interventions. For instance, studies show and activation precede joint pain in RA, with altered immune cell subsets detectable years in advance. Current efforts center on developing predictive models for efficacy in cancers, particularly blood cancers like , by integrating pre- and post-treatment immune profiles to forecast responses to checkpoint inhibitors and transplants. These models draw on data to pinpoint immune evasion tactics, such as suppressed T-cell infiltration, aiding personalized treatment strategies for high-relapse malignancies. Methodologically, the leverages high-throughput sequencing for deep immune cell phenotyping and to map immune landscapes within tissues, revealing how cellular positioning influences function in contexts like chronic inflammation or tumor niches. This approach, combined with computational tools, supports the creation of open-access resources for broader scientific use.

Neural Dynamics Division

The Allen Institute for Neural Dynamics was launched in as a dedicated division within the Allen Institute, focusing on elucidating neural circuit dynamics in the mammalian brain through advanced imaging and techniques. This division investigates how neural signals propagate through circuits to interpret environmental cues and drive behaviors, using mice as primary models to parallel human cognitive processes such as and economic . Led by Karel Svoboda, the division employs a multidisciplinary approach to trace activity patterns at both cellular and network levels, aiming to uncover the mechanisms underlying complex behaviors. Key projects emphasize functional analysis in behaving animals, including the use of two-photon to monitor cell-type-specific activity during task learning and novelty processing in mice. For instance, the Cell Types & Learning initiative combines longitudinal imaging with to reveal how distinct neuronal populations adapt during learning tasks. Complementary efforts, such as the project, explore models of and by studying task-switching behaviors, where circuits reconfigure to route information flexibly. Another notable project, Credit Assignment During Learning, employs optical connection-mapping and brain-computer interfaces to examine synaptic updates that support learning, providing insights into how errors are assigned and corrected in neural networks. These initiatives have contributed to high-impact findings, such as the synaptic architecture of layer 5 excitatory neurons in mouse , which informs models. Current research links recurring circuit motifs to cognitive functions, including and learning, by analyzing multi-regional interactions like thalamic of cortical activity. The Brain-Wide project, for example, dissects subclasses of neuromodulator neurons and their roles in modulating learning and decision-making across brain regions. Technologies central to this work include custom tools for precise of neuronal activity, as demonstrated in synaptic studies, and computational simulations to model network-level computations. Advanced methods like Neuropixels probes for and three-photon for deeper further enable high-resolution tracking of voltage dynamics in behaving mammals, as detailed in recent publications. These approaches prioritize scalable, open-access tools to advance understanding of neural dynamics' behavioral impacts.

Frontiers Group

The Paul G. Allen Frontiers Group, a division of the Allen Institute, was initiated in 2016 with an initial $100 million commitment from philanthropist Paul G. Allen to catalyze high-risk, high-reward research in biosciences. The group invests in external researchers and teams worldwide who tackle fundamental unsolved biological questions, aiming to generate transformative insights that reshape understanding of and disease. Through its funding programs, it supports exploratory work that prioritizes bold innovation over incremental advances, fostering diverse perspectives from scientists at various career stages. The group's primary focus areas encompass origins of life, cellular reprogramming, and novel disease therapies, among broader bioscience frontiers such as membrane biophysics and dynamics. For instance, it has provided grants for studies on synthetic s to explore cellular compartmentalization and communication, enabling new approaches to engineering biological systems. Similarly, funding has supported investigations into biology, using resilient organisms like nematodes to model adaptations in changing environments and inform therapeutic strategies. These efforts align with the institute's principles by requiring to accelerate collective progress. Awards are distributed via programs like the Allen Distinguished Investigators, which provide $1–1.5 million over three years to individual or small-team projects, and Allen Discovery Centers, offering up to $20 million over eight years for larger initiatives. The selection process involves peer-reviewed open calls and competitions that evaluate proposals based on their potential for paradigm-shifting impact, with rigorous scientific review emphasizing feasibility, novelty, and interdisciplinary potential. Since inception, the group has awarded over $10 million in multiple cohorts to address such challenges, scaling support to match project ambition.

Seattle Hub for Synthetic Biology

The Seattle Hub for Synthetic Biology was launched in 2023 as a collaborative initiative between the , the , and the to advance applications in health research. This hub focuses on engineering synthetic networks that enable the study and manipulation of biological functions, particularly by developing technologies to record cellular histories over time and link genetic changes to disease processes. These networks function as programmable "recorders" within cells, capturing dynamic events such as or environmental exposures to provide insights into and . Key projects at the hub include the design of minimal genomes to explore essential genetic elements and their rearrangements in mammalian cells, as pursued by the Pinglay Lab, which aims to map genome consequences for more efficient synthetic constructs. Additionally, efforts involve developing gene drives and related synthetic tools for disease modeling, building on gene-editing advancements to simulate pathological gene propagation and test therapeutic interventions. These projects emphasize scalable, high-fidelity systems that integrate CRISPR-based editing with synthetic circuits to model complex diseases like cancer or immune disorders. Current goals center on creating tools for precise editing in complex tissues, such as or immune organs, to enable recording and manipulation at single-cell resolution. In March 2025, the hub received a $10 million from the Washington Research Foundation to train the next generation of synthetic biologists and accelerate technology development. This includes refining promoter libraries and gRNA scaffolds for robust mammalian genome engineering, facilitating next-generation synthetic networks. The hub's specialized facilities support these aims through dedicated labs for , , and , allowing rapid prototyping and validation of synthetic constructs across millions of cells.

Brain and Consciousness Program

The Brain and Consciousness Program at the Allen Institute investigates the neural underpinnings of in mammals by elucidating the physical substrate of in the . Evolved from the MindScope Program in 2023, it integrates behavioral observations, advanced imaging techniques, and theoretical modeling to probe the mechanisms underlying conscious experience. This approach builds on prior large-scale neural recording efforts to explore how activity gives rise to subjective and . Key projects within the program focus on studying perceptual states in mice and non-human through large-scale neural recordings. In mice, researchers employ high-density electrophysiological probes, such as Neuropixels, to capture activity across cortical and subcortical regions during sensory tasks, revealing how visual stimuli are processed in behaving animals. For non-human , similar high-density recordings enable brain-wide mapping of neural responses to perceptual inputs, providing insights into the distributed nature of sensory awareness. These efforts leverage standardized platforms like the Allen Brain Observatory to ensure reproducible, high-throughput data collection. The program's current emphasis involves developing theories that connect thalamocortical interactions to conscious experience, examining how synchronized activity between the and contributes to perceptual binding and awareness. Researchers utilize environments to immerse mice in controlled sensory scenarios, allowing precise manipulation of visual and behavioral contexts to dissect conscious processing. Complementing this, AI-assisted techniques facilitate behavioral phenotyping by automating the identification of subtle patterns in neural and movement data, enhancing the of large datasets from these experiments.

Scientific Approach

Open Science Principles

The Allen Institute has upheld as a foundational principle since its inception, committing to the unrestricted release of all validated data, tools, and scientific findings to the global research community. This policy originated with the launch of the Allen Mouse Brain Atlas in 2006, which mapped across the and was made freely accessible online without requiring registration or fees, provided proper attribution is given. By prioritizing immediate dissemination upon validation, the Institute bypasses traditional publication timelines, enabling researchers worldwide to build upon its outputs without delay. This approach yields significant benefits, including accelerated scientific progress and enhanced reproducibility in and related fields. For instance, datasets from have garnered over 10,000 citations in peer-reviewed publications, demonstrating their widespread adoption and influence on subsequent discoveries. The fosters a collaborative where reduces barriers to entry, allowing diverse investigators to integrate Allen Institute resources into their work efficiently. Implementation occurs through dedicated, user-friendly data portals such as the Allen Brain Map and the Allen Cell Explorer, which provide interactive access to curated resources. These platforms incorporate standardized protocols to ensure consistency, , and ease of use across datasets, facilitating seamless integration with other scientific tools. This infrastructure supports the Institute's nonprofit mission by promoting transparency and collective advancement. To address potential challenges like concerns, the Allen Institute leverages its nonprofit status and employs open licensing models that encourage sharing while protecting the integrity of the work. This framework mitigates risks associated with proprietary restrictions, allowing commercial and academic users alike to derive value without legal encumbrances. Such strategies have enabled to sustain its ethos across its research divisions.

Multidisciplinary Collaboration

The Allen Institute employs a multidisciplinary approach to research, assembling cross-disciplinary teams that integrate expertise from biologists, physicists, mathematicians, engineers, and data scientists from the outset of projects. This team-based methodology emphasizes collaborative problem-solving, where diverse perspectives address complex bioscience challenges, such as understanding cellular and neural systems at scale. By blending experimental and computational disciplines, these teams foster through shared goals and structured interactions, including regular meetings and symposia that prioritize group progress over individual achievements. Examples of this include joint laboratory environments where computational modelers collaborate closely with experimentalists to incorporate analysis into ongoing experiments, enabling iterative refinements and rapid testing. Such setups facilitate seamless workflows, allowing teams to leverage tools like advanced and modeling software developed in-house. This internal ensures that theoretical insights inform practical experimentation without delays, enhancing the efficiency of large-scale investigations. To support this collaborative culture, the Institute offers extensive internal training programs for its over 800 staff members, including workshops on applications in , advanced techniques, and ethical considerations in scientific practice. These initiatives, such as hands-on sessions with open-source modeling tools and data collection methods, promote and skill development across roles. By equipping employees with interdisciplinary competencies, the programs strengthen team cohesion and adaptability. The outcomes of this multidisciplinary collaboration include accelerated problem-solving, as demonstrated by hybrid wet-lab and dry-lab workflows that combine robotic automation with computational simulations for streamlined . This approach has enabled to produce high-impact resources more efficiently, contributing to foundational advances in bioscience while supporting practices that further internal team dynamics.

Leadership and Governance

Board of Directors

The Board of Directors of the Allen Institute provides high-level oversight and stewardship to ensure the organization advances its mission in biomedical research through and innovation. Chaired by since 2018 following the death of co-founder Paul G. Allen, the board guides strategic direction and long-term sustainability. The board comprises 13 members with diverse expertise in science, , , , and , enabling balanced on priorities and resource allocation. Responsibilities include strategic planning, financial oversight, and approval of major initiatives, such as the establishment of new research divisions. Key members bring specialized knowledge: for instance, A. Paul Alivisatos, a nanoscientist and former director of the , contributes to scientific strategy; Gerald Rubin, executive director of the Howard Hughes Medical Institute's Janelia Research Campus, offers insights in ; and Aviv Regev, president and head of Research and Early Development, provides expertise in and . In and , Matt McIlwain, managing director at Madrona Venture Group, supports investment decisions, while Phyllis J. Campbell, an independent board director and former executive, advises on governance. Bioethicist Alta Charo, from the University of Wisconsin, ensures ethical considerations in advancements. The full current composition includes:
MemberAffiliation/Expertise
A. Paul Alivisatos (nanotechnology, )
Jody AllenBoard Chair; (, )
Margaret Anderson Consulting LLP (healthcare consulting, nonprofit )
Joanne Berger-SweeneyTrinity College (, )
Phyllis J. CampbellIndependent Board Director and Adviser (, )
Alta CharoUniversity of Wisconsin (, )
Thomas L. Daniel (, )
Carla DewBerry (, )
Steve HallCercano Management ()
Matt McIlwainMadrona (, )
Aviv Regev (, )
Gerald RubinHHMI Janelia Research Campus (, )
Michael P. Stryker ()
This structure fosters multidisciplinary input to align the institute's programs with broader scientific and societal goals.

Executive Leadership

The executive leadership of the Allen Institute is headed by President and Chief Executive Officer , D.V.M., Ph.D., who has held the position since 2022. Costa oversees the institute's scientific research programs and administrative operations, guiding strategic initiatives across , , and emerging moonshot projects like . His leadership emphasizes large-scale, approaches to accelerate discoveries in function and mechanisms. Supporting Costa are key executives including Christopher Beaudoin, MBA, who manages day-to-day operations, resource allocation, and organizational efficiency. Scientific direction is provided through executive vice presidents who serve as division directors, such as Hongkui Zeng, Ph.D., for Brain Science; Ruwanthi (Ru) Gunawardane, Ph.D., for Cell Science; Karel Svoboda, Ph.D., for Neural Dynamics; and Kaech, Ph.D., incoming Executive Vice President for the Immunology moonshot (appointed in October 2025, starting January 2026). The Chief Scientific Officer role, previously held by figures like , has involved rotations among senior leaders to align expertise with evolving research priorities. The executive team collectively handles critical functions such as budget allocation to support multidisciplinary projects, talent recruitment to build high-caliber research teams, and the integration of and tools across programs to enhance and modeling in and . Leadership also promotes inclusive hiring practices, fostering a diverse senior team that includes significant representation of women in key roles, in line with the institute's commitment to equity and belonging.

Accomplishments and Impact

Major Scientific Discoveries

One of the Allen Institute's foundational breakthroughs came in with the release of the first comprehensive atlas of in the adult . This genome-wide resource mapped the spatial patterns of over 20,000 genes across more than 200 anatomical regions, demonstrating that approximately 80% of mammalian genes are expressed in the brain and revealing unexpectedly uniform expression patterns in many areas. The atlas, generated using techniques on thousands of tissue sections, provided a publicly accessible digital platform that accelerated by enabling researchers to explore gene-brain region relationships without starting from scratch. The launch of the Allen Institute for Cell Science in 2014 advanced the understanding of cellular organization and behavior. Subsequent releases, such as the 2016 Allen Cell Collection of gene-edited iPSC lines, provided standardized tools for studying cellular processes. The institute's 2020 contributions to research identified key immune cell signatures distinguishing mild from severe cases, revealing hyperinflammatory pathways driven by distinct immunotypes such as elevated T cell exhaustion and T-bet+ plasmablasts in critically ill patients. Through deep profiling of over 125 individuals via high-dimensional , in collaboration with partners like Cancer Research Center, the work delineated three patient immunotypes linked to disease trajectories, emphasizing early surges and IFNγ-associated responses as markers of progression. These findings, supported by the Allen Institute for , have guided therapeutic targeting of inflammatory dysregulation to mitigate severe outcomes.

Data Resources and Public Tools

The Allen Institute develops and maintains a suite of open-access data resources and public tools to accelerate bioscience research, emphasizing accessibility, interoperability, and community use across , , and . These resources include comprehensive datasets derived from high-throughput experiments, interactive platforms, and software for , all freely available without restrictions for non-commercial purposes. By prioritizing standardized formats and cloud-based distribution, the Institute enables global researchers to integrate its outputs into their workflows, fostering reproducible and collaborative discovery. The Allen Brain Atlas serves as a cornerstone resource, providing an interactive online portal that hosts over 20 major atlases encompassing more than 100 specialized datasets on , neural connectivity, and cell types. These datasets span species including , , and non-human such as the , featuring high-resolution maps like the Adult Mouse Brain Connectivity Atlas with structural connections from the and the Alzheimer's Disease Brain Cell Atlas profiling approximately 1.4 million cells. data alone include 700 billion data points from and single-cell sequencing, allowing users to explore spatial and molecular brain organization through tools like the Brain Explorer 3D viewer and for programmatic access. Annually, around 350,000 neuroscientists interact with the portal to download and analyze these resources. In , the Allen Cell Explorer offers a public data portal with 3D models, dynamic videos, and interactive visualizations of human (iPSC) lines, capturing intracellular organization and dynamics during processes like . The collection includes 58 engineered iPSC lines targeting key cellular structures, plus 37 additional clones from eight models such as and , enabling comparative analysis of healthy and perturbed cells. Users can access measured features like positions via the Cell Feature Explorer , along with APIs for and with external software, supporting studies in cell and mechanisms. For , the Human Immune System Explorer portal provides open datasets from single-cell sequencing (scRNA-seq) of peripheral mononuclear cells, focusing on immune health across ages and extending to disease states like cancer and . Key releases include the Human Immune Health Atlas, profiling over 16 million cells from more than 300 healthy donors aged 25 to 90, identifying 71 immune cell subsets and age-related dynamics. Additional datasets cover over 50 conditions through longitudinal studies and tissue-specific profiling, with raw and processed data downloadable via AWS S3 buckets in standardized formats for seamless integration into analysis pipelines. Supporting these datasets are public software tools developed or adapted by the Institute, such as the for Python-based querying of brain data and visualization utilities for immune cell trajectories. Collectively, these resources see extensive use, with the alone cited in thousands of peer-reviewed publications and contributing to major advances in understanding brain function and immune responses.

Collaborations and Partnerships

Academic and Industry Partners

The Allen Institute maintains strong academic partnerships with leading universities to advance neuroscience and bioscience research. A key collaboration is with the University of Washington, involving joint initiatives such as the Seattle Hub for Synthetic Biology, which integrates synthetic biology tools to study disease mechanisms, and a shared brain atlas project aimed at mapping human brain structures for health breakthroughs. Similarly, the Institute partners with Harvard Medical School through the Allen Discovery Center for Human Brain Evolution, focusing on comparative neuroanatomy to understand human brain development, and participates in the BRAIN Initiative Cell Census Network (BICCN) alongside Harvard's McCarroll Lab for cell-type atlases. Additionally, the Allen Institute collaborates with the Max Planck Institute on developing nanophotonic neural probes for precise brain stimulation and recording in systems neuroscience. In the industry sector, the Allen Institute engages with and pharmaceutical companies to translate research into therapeutic applications. For instance, it partners with on projects to profile biomarkers and diversity using single-cell technologies. The Institute also collaborates with to engineer adeno-associated viruses (AAVs) for cell-specific gene therapies targeting rare diseases. These efforts extend to computational applications in bioscience research through alliances like the Allen Institute for Immunology's work with Cloud, supporting scalable tools for immune . In November 2025, the Institute partnered with and to launch the Brain Knowledge Platform, an AI-powered tool that integrates vast datasets to accelerate discoveries in brain function and disease. Joint programs exemplify the Institute's collaborative framework, including the BICCN, a NIH-funded consortium involving over 10 institutions such as the Broad Institute, Janelia Research Campus, and , to create comprehensive brain cell atlases integrating transcriptomics, , and . Another is the Allen Discovery Center at , directed by Markus Covert, which models infection dynamics at multiple scales to inform infectious disease strategies. These partnerships have yielded significant outcomes, including numerous co-authored publications in high-impact journals that integrate diverse datasets for and insights. The Institute facilitates technology transfers by openly sharing imaging hardware designs, such as custom electron microscopy pipelines and two-photon systems, enabling external labs to adopt advanced neuroanatomical tools.

Global and Philanthropic Initiatives

The Allen Institute has spearheaded global efforts in through its leadership in the Cell Atlas Network (BICAN), a collaborative project funded by the U.S. involving over 17 institutions worldwide. This initiative aims to create comprehensive atlases of cell types and functions in the , as well as in macaque and brains, by mapping approximately 200 billion cells using advanced sequencing technologies. Key partners include the European Molecular Biology Laboratory's (EMBL-EBI), which standardizes metadata, develops annotation tools, and contributes to the final cell type catalog, ensuring data accessibility for international researchers studying function and diseases. Philanthropically, the Paul G. Allen Frontiers Group extends the Institute's reach by awarding multimillion-dollar grants to international teams pursuing high-risk, high-reward bioscience projects that might not secure traditional funding. These three-year awards, ranging from $1 million to $1.5 million, support innovative research in areas like organelle biology and microbial resilience, with recipients from institutions across Europe, Asia, and beyond. Additionally, the Group has funded initiatives in underrepresented regions, such as a partnership with the nonprofit TReND in Africa to bolster computational neuroscience training through the TReND-CaMinA program, which provides open access to Allen Institute datasets like the Brain Observatory and has engaged dozens of African students annually in hands-on workshops since 2024. In July 2025, the Institute collaborated with Aligning Science Across Parkinson's (ASAP) to develop tools for integrating and visualizing data on Parkinson's and other neurodegenerative diseases, creating a common language for cross-disease research. The Institute advances diversity in global through programs like the Next Generation Leaders initiative, which since 2023 has selected cohorts of early-career researchers from diverse backgrounds worldwide for , networking, and funding to foster inclusive bioscience innovation; the 2025 cohort includes eight emerging leaders. Complementing this, the annual Open Science Week, founded by the Allen Institute in 2019, promotes international collaboration by highlighting practices and engaging thousands of participants globally via online events and resources. Through such fellowships, workshops, and partnerships, the Institute has supported hundreds of international early-career , enhancing equitable access to cutting-edge tools and training.

References

  1. [1]
    About
    ### Allen Institute Encyclopedia Entry Summary
  2. [2]
    Announcing the Allen Institute for Neural Dynamics, a new ...
    Nov 4, 2021 · A new neuroscience research division focused on the mammalian brain's computations that give rise to complex behaviors like decision making, learning and ...
  3. [3]
    Allen Institute for Brain Science completes brain atlas
    The Allen Brain Atlas is a Webbased, three-dimensional map of gene expression in the mouse brain.
  4. [4]
    Allen Institute - Understanding life, advancing health
    At the Allen Institute we're researching the brain, our cells, the immune system – life itself – to expand our understanding of health, and to unlock new ...CareersAboutBrain SciencePeopleResearch
  5. [5]
    Paul G. Allen Commits $100 Million to Brain Research
    Launched in 2003 with a seed contribution from founder and philanthropist, the late Paul G. Allen, the Allen Institute is supported by a diversity of government ...
  6. [6]
    Who We Are | Allen Family Philanthropies
    The Paul G. Allen Family Foundation was founded by philanthropists Jody Allen and the late Paul G. Allen, co-founder of Microsoft.
  7. [7]
    Getting to the Allen Institute
    The Allen Institute headquarters is at the northwest corner of Mercer Street and Westlake Avenue in the South Lake Union neighborhood of Seattle. Visit ...
  8. [8]
    Allen Institute, 615 Westlake Ave N, Seattle, WA 98109, US
    The Allen Institute, located in Seattle, WA, is dedicated to bioscience research, advancing health, and exploring areas like Alzheimer's and cancer.
  9. [9]
    Allen Institute - Vulcan Real Estate
    The project was built on reclaimed industrial land at the northwest corner of Mercer and Westlake in South Lake Union, and it incorporates the original terra ...
  10. [10]
    Allen Institute - GLY Construction
    Its seven stories house dry and wet labs, a data center and education center, an electron microscopy area, and a public plaza with an interactive art ...Missing: amenities | Show results with:amenities
  11. [11]
    Allen Institute's Workplace Design for High-Throughput ...
    Jun 6, 2018 · The Allen Institute's new 270,000-sf Seattle facility implements an innovative floor plan to integrate lab space, office space, meeting space, ...Missing: square footage amenities
  12. [12]
    Allen Institute - Perkins&Will
    Apr 26, 2017 · The Allen Institute decided to build one new headquarters on a holistic site in the South Lake Union neighborhood of Seattle.
  13. [13]
    [PDF] ALLEN INSTITUTE HEADQUARTERS
    The building is LEED GOLD certified by the. US Green Building Council. CONSTRUCTION FACTS. • 121,000 tons of soil excavated from the site. • 70-million gallons ...Missing: amenities | Show results with:amenities
  14. [14]
    Allan Jones - Allen Institute
    Jones was one of the Allen Institute's first four employees when the nonprofit launched in 2003 ... Today the Allen Institute's founding CEO, Allan Jones, Ph.D., ...News & Events · Paul G. Allen (1953--2018) · Big Science, Team Science...
  15. [15]
    Reflections on the beginnings of the Allen Institute
    at the time, the Allen Institute for Brain Science — was charged by its founder, Paul G. Allen, to map where each of the adult mouse's ...
  16. [16]
    Paul G. Allen, 65, Remembered as Pioneer Philanthropist in ...
    Oct 16, 2018 · During his lifetime, Allen gave more than $2 billion to various causes—including the Seattle bioscience institute bearing his name that pursues ...
  17. [17]
    [PDF] ALLEN INSTITUTE FOR BRAIN SCIENCE LAUNCHES NEW OPEN ...
    December 19, 2007 — The Allen Institute for Brain Science today announced the launch of new open resources and tools for researchers, ...
  18. [18]
    Paul G. Allen to give $100 million to create cell science institute
    Dec 8, 2014 · Philanthropist and entrepreneur Paul G. Allen today announced a commitment of $100 million to create the Allen Institute for Cell Science in Seattle.
  19. [19]
    Paul G. Allen Announces $100 Million to Launch the ... - PR Newswire
    Mar 23, 2016 · Allen today announced an initial commitment of $100 million to create The Paul G. Allen Frontiers Group, whose purpose will be to explore the ...
  20. [20]
    Announcing the Allen Institute for Immunology, a new research ...
    Seeded by $125 million donation by the late Paul G. Allen, the Allen Institute for Immunology will study human immune health, cancer, and autoimmune diseases.Missing: 2014 | Show results with:2014<|control11|><|separator|>
  21. [21]
    In memoriam: Allen Institute founder Paul G. Allen
    Oct 15, 2018 · Allen Institute founder Paul G. Allen died on Monday afternoon, October 15, 2018, from complications of non-Hodgkin's lymphoma in Seattle. He ...
  22. [22]
    Jody Allen - Wikipedia
    With her brother, Allen co-founded the Seattle-based non-profit organization Allen Institute for Brain Science in 2003, of which she serves as chairman of the ...
  23. [23]
    A new window into the human brain - Allen Institute
    A new window into the human brain. 10.25.2017. 1 min read. Share: Share this ... Allen Institute for Neural Dynamics.
  24. [24]
    MindScope - Allen Institute
    This program entered a transition phase in 2023. Before then, this program focused on investigating the mechanics of behavior and consciousness. MindScope ...
  25. [25]
    Seattle Hub for Synthetic Biology launched by Allen Institute, Chan ...
    First-of-its-kind research initiative will develop technologies to reveal how changes in cells and genes over time influence human health and disease.
  26. [26]
  27. [27]
    Brain Science - Allen Institute
    Imaging. Exploring the diversity of cell types in the brain using a variety of microscopy and image processing techniques. · Molecular Genetics · Neuroanatomy.Meet the team · Data and Technology · Imaging · Read More
  28. [28]
    ABC Atlas - Brain-Map.org
    The Allen Brain Cell (ABC) Atlas provides a platform for visualizing multimodal single cell data across the mammalian brain and aims to empower researchers ...
  29. [29]
    Allen Brain Cell Atlas
    The Allen Brain Cell (ABC) Atlas provides a platform for visualizing multimodal single cell data across the mammalian brain.Explore The Data · Merfish Whole Mouse Brain · Xiaowei Zhuang, Harvard...Missing: 2007 | Show results with:2007
  30. [30]
    Database Guide: Allen Brain Cell (ABC) Atlas
    May 6, 2025 · The ABC Atlas is an online, browser-based tool that allows researchers to visualize multiple high-quality single-cell datasets for free.Missing: Division founded projects BICCN
  31. [31]
    Allen Institute for Brain Science awarded ~$100 million to lead ...
    Oct 23, 2017 · The goal of this project is to create a comprehensive atlas of cell types in the whole mouse brain, the first in mammals. Researchers will ...
  32. [32]
  33. [33]
    What makes us human? Detailed cellular maps of ... - Allen Institute
    Scientists at the Allen Institute for Brain Science, a division of the Allen Institute ... Researchers at the Allen ...
  34. [34]
    BRAIN Initiative Cell Census Network—Motor Cortex - Nature
    This collaborative effort has integrated a variety of different large-scale data sets to better define brain cell types.
  35. [35]
    Scientists unveil first complete cellular map of adult mouse brain
    Dec 13, 2023 · Allen Institute scientists contributed to five other studies, including: A spatial atlas of cell types in the whole mouse brain. In this ...
  36. [36]
    Allen Institute CEO Rui Costa on mapping the brain ... - STAT News
    Jan 3, 2024 · It's now home to 827 employees, many of whom are researchers working in divisions dedicated to brain science, immunology, cell biology, and ...
  37. [37]
    The People Behind the Allen Institute
    At the Allen Institute, you'll find neuroscientists, cell biologists, mathematicians, physicists, engineers, immunologists, geneticists, informatics experts.Board of Directors · Advisors · Next Generation LeadersMissing: 95 | Show results with:95
  38. [38]
    Brain Science Management Team - Allen Institute
    Brain Science Management · Scientific Projects · Brain Science leadership team · Luke Esposito, Ph.D. · Michael Hawrylycz, Ph.D. · Tim Jarsky, Ph.D. · Ed Lein, Ph.D.Missing: size | Show results with:size
  39. [39]
    A Decade of Discovery at the Allen Institute for Cell Science
    The Allen Institute for Cell Science was launched in 2014 with a contribution from founder and philanthropist, the late Paul G. Allen. The data, tools and ...
  40. [40]
    Allen Institute for Cell Science
    Open science data, tools, and resources. The Allen Cell Explorer data portal offers an unprecedented view into the organizational diversity of human stem cells.Transforming Our... · Open Science Data, Tools... · Science: Can Ai Capture The...
  41. [41]
    ALLEN CELL EXPLORER - Home
    Allen Institute for Cell Science - CellScapes: Uncovering the design principles of multicellular programs essential for life.Missing: Division | Show results with:Division
  42. [42]
    Allen Institute for Cell Science Debuts First Comprehensive View of ...
    May 22, 2019 · Allen Institute for Cell Science Debuts First Comprehensive View of Human Cell Division. The data-driven model sheds new light on mitosis, a ...
  43. [43]
  44. [44]
    Allen Cell & Structure Segmenter
    The Allen Cell & Structure Segmenter is a Python-based open source toolkit for 3D segmentation of intracellular structures in fluorescence microscope ...
  45. [45]
    Tools and resources overview - ALLEN CELL EXPLORER
    The Allen Institute provides tools for image analysis, visualization, data support, and code, including AGAVE, Allen Cell Segmenter, and BioIO.
  46. [46]
    Immunology - Allen Institute
    The Allen Institute for Immunology is working to advance the fundamental understanding of human immunology through the study of immune health and diseases.Cancer · Inflammation · Tissue Immunity · Immune Health and AgingMissing: 2016 | Show results with:2016
  47. [47]
    Allen Institute for Immunology unveils landmark Human Immune ...
    Sep 19, 2024 · A comprehensive single-cell reference dataset that offers unprecedented insight into the landscape of healthy human immune cells from childhood through ...Missing: Division 2016 COVID- 19 lupus rheumatoid arthritis immunotherapy spatial transcriptomics
  48. [48]
    COVID-19 - Allen Institute
    Our scientists are investigating how the human immune system clears COVID-19, and what goes wrong in long COVID.Missing: Division mapping
  49. [49]
    Autoimmunity - Allen Institute
    This team is using single cell multi-omic approaches to study the complexity of the immune response and identify mechanisms regulating autoimmune pathogenesis.Missing: 2016 diversity technologies COVID- 19 lupus predictive models immunotherapy sequencing spatial transcriptomics
  50. [50]
    New study reveals rheumatoid arthritis begins long before symptoms ...
    The new research reveals that people at risk for RA experience dramatic immune system changes long before they feel symptoms. During this early phase, their ...Missing: Division lupus
  51. [51]
    Oncology
    ### Summary of Cancer Research and Predictive Models for Immunotherapy Efficacy
  52. [52]
    Tissue Immunity - Allen Institute
    Our team investigates how the location of immune cells within tissues governs their function, using advanced spatial transcriptomics and genetic perturbation ...
  53. [53]
    Allen Institute for Neural Dynamics
    Our experiments and open resources will shed light on behavior, memory, how we handle uncertainty and risk, how we and other animals chase rewards, and how some ...Neurobiology of Action · Electrophysiology · Scientific Computing · Behavior GroupMissing: labs | Show results with:labs
  54. [54]
  55. [55]
    Projects | Allen Institute for Neural Dynamics
    ### Summary of Key Projects at Allen Institute for Neural Dynamics
  56. [56]
  57. [57]
    Paul G. Allen Announces $100 million to Launch The ... - Allen Institute
    The Paul G. Allen Frontiers Group will explore the landscape of bioscience and support ideas at the frontier of knowledge to advance science.Missing: mission statement
  58. [58]
    Paul G. Allen Frontiers Group - Allen Institute
    The Paul G. Allen Frontiers Group works to fulfill our founder's lifelong quest to push the limits of science and to reshape our understanding of human biology.Distinguished Investigators · Open Calls for Science Funding · Discovery Centers
  59. [59]
    Allen Distinguished Investigators - Allen Institute
    Researchers in this cohort will focus on cellular membranes that separate cell contents from the surrounding environment, allow cells to change shape, exchange ...
  60. [60]
    The Paul G. Allen Frontiers Group announces Allen Discovery ...
    Allen Frontiers Group was founded in 2016 by the late philanthropist and visionary Paul G. Allen. About the Scripps Institution of Oceanography. Scripps ...Missing: establishment | Show results with:establishment
  61. [61]
    The Paul G. Allen Family Foundation Awards $10.5 Million to new ...
    Nov 21, 2023 · The Paul G. Allen Family Foundation Awards $10.5 Million to new Allen Distinguished Investigators. Research funding will support four projects ...
  62. [62]
    Seattle Hub for Synthetic Biology - Allen Institute
    Researchers at the Seattle Hub for Synthetic Biology are building cellular recording technology that records and captures live data from millions of cells.
  63. [63]
    Inside the new Seattle Hub for Synthetic Biology, which uses DNA to ...
    Apr 2, 2024 · The hub's first main goal is to build a “biological recorder mouse,” enabling researchers to track biological actions such as cell divisions and molecular ...Missing: minimal drives
  64. [64]
    Pinglay Lab - Allen Institute
    Mapping the consequences of mammalian genome rearrangements and paving the path to minimal genomes.
  65. [65]
    Gene drives get a precision upgrade - Allen Institute
    Apr 16, 2019 · Gene drives, which Bier has helped spearhead, combine two concepts that exist separately in nature: CRISPR, a bacteria-derived gene-editing ...Missing: minimal | Show results with:minimal
  66. [66]
    Chromatin context-dependent regulation and epigenetic ... - PubMed
    May 9, 2024 · ... Seattle Hub for Synthetic Biology, Seattle, WA 98109, USA. ... Gene Editing* / methods; Histone Code; Histones / metabolism; Humans ...
  67. [67]
    Genome recording makes living cells their own historians
    Shendure noted the research covered in the paper played an important role in the development of the Seattle Hub for Synthetic Biology, a collaboration ...
  68. [68]
  69. [69]
    Brain and Consciousness - Allen Institute
    The Brain and Consciousness group at the Allen Institute seeks to understand the physical substrate of consciousness.Huberman Lab: How To Expand... · Big Think: One... · The Chopra Well: Exploring...Missing: launch 2023
  70. [70]
    20 Years of Impact | 2023 Annual Report GPP - Allen Institute
    We started a Teacher Academy to train educators on how to use our science in their classrooms. We published landmark studies on the interior design of our cells ...Missing: expansions history
  71. [71]
    Visual Coding - Allen Brain Atlas
    We have used large-scale physiological recordings in behaving animals to characterize how sensation and behavior are encoded in activity across the visual ...
  72. [72]
    Large-scale high-density brain-wide neural recording in nonhuman ...
    Jun 23, 2025 · The programmable sites of Neuropixels 1.0 NHP provide a number of advantages over existing recording technologies appropriate for primates.
  73. [73]
    Virtual reality is helping neuroscientists better understand the brain
    Researchers at the Allen Institute for Brain Science and Southeast University in Nanjing, China, recently devised a way to use virtual reality to help ...Missing: behavioral phenotyping
  74. [74]
    Scientists create ChatGPT-like AI model for neuroscience to build ...
    Oct 7, 2025 · Allen Institute Logo · Scientists create ChatGPT-like AI model for neuroscience to build detailed mouse brain map.Missing: virtual reality phenotyping
  75. [75]
    Big Science, Team Science, and Open Science for Neuroscience
    Nov 2, 2016 · The Allen Institute for Brain Science is a non-profit private institution dedicated to basic brain science with an internal organization more commonly found in ...Missing: grant- | Show results with:grant-
  76. [76]
    Allen Brain Atlas maps 21 000 genes of the mouse brain - The Lancet
    Anyone can use the atlas. Access is free, and no registration or logon is required. The institute asks only that it be credited if atlas data are used. The ...
  77. [77]
    Allen Institute for Brain Science
    We seek to understand the complexities of the brain by characterizing and mapping brain cells with unprecedented precision and scale.
  78. [78]
  79. [79]
    Culture & Values - Allen Institute
    Multidisciplinary teams and diverse perspectives make our work possible. We blend the best aspects of academia, scientific research, and technology, ...Missing: approach | Show results with:approach
  80. [80]
    Data-Driven Discovery: AI and Modeling in Biology Workshop
    This workshop was organized by Anton Arkhipov (Allen Institute), Tatiana Engel (Princeton), Michael Brenner (Harvard/Google), and Stephen Saalfeld (Janelia).
  81. [81]
    2025 Neuropixels and OpenScope Workshop - Allen Institute
    In this workshop, participants will gain in-depth exposure to the tools and techniques used by the Allen Institute to collect in vivo physiology data at scale.
  82. [82]
    Board of Directors - Allen Institute
    Board of Directors · A. Paul Alivisatos · Jody Allen · Margaret Anderson · Joanne Berger-Sweeney · Phyllis J. Campbell · Alta Charo · Thomas L. Daniel · Carla DewBerry.
  83. [83]
    Allen Institute adds former Washington governor, executives from ...
    Feb 19, 2019 · ... Chair Jody Allen, who is also Chair of Vulcan Inc. and Trustee of ... Allen Institute for Immunology, launched in 2018. In 2016, the ...
  84. [84]
    Allen Institute adds leading authority on bioethics to board of directors
    The Allen Institute today announced the appointment of Alta Charo, JD, renowned bioethicist, to its Board of Directors.<|control11|><|separator|>
  85. [85]
    Allen Institute announces Rui Costa as next President and Chief ...
    Dec 16, 2021 · ... CEO since 2017 ... “I am thrilled to join the Allen Institute as President and CEO,” said Rui Costa, D.V.M., Ph.
  86. [86]
    Rui Costa - Allen Institute
    He served as director of Champalimaud Research from 2014 to 2017. In 2017, Costa was named CEO of the Mortimer B. Zuckerman Mind Brain Behavior Institute at ...
  87. [87]
    New Allen Institute CEO on diversity and impact in life science
    Apr 8, 2022 · One of the first steps is creating and hiring in-house experts and creating the diversity-and-belonging office. We want to have a culture where ...Missing: senior roles
  88. [88]
    Leadership - Allen Institute
    Lenina Arenas-Fuentes, M.Ed., MBA · Christopher Beaudoin, MBA · Rui Costa, D.V.M, Ph.D. · Ruwanthi (Ru) Gunawardane, Ph.D. · Julie Harris, Ph.D. · Andrew Hickl · Meg ...Missing: Board | Show results with:Board
  89. [89]
    Susan Kaech, Ph.D., named next leader of Allen Institute's ...
    The Allen Institute today announced the appointment of Susan Kaech, Ph.D., as Executive Vice President for its Immunology moonshot: a major research initiative ...
  90. [90]
    Christof Koch - Allen Institute
    Christof Koch, Ph.D. Meritorious Investigator. Brain and Consciousness. Bio: Christof Koch is a Meritorious Investigator at the Allen Institute ...
  91. [91]
    Culture and community - Allen Institute
    The Allen Institute is committed to an inclusive culture and community that encourages, nurtures, and celebrates the diverse voices of our employees.Missing: multidisciplinary collaboration approach<|control11|><|separator|>
  92. [92]
    Genome-wide atlas of gene expression in the adult mouse brain
    Jan 11, 2007 · We describe here an anatomically comprehensive digital atlas containing the expression patterns of approximately 20,000 genes in the adult mouse ...
  93. [93]
    Genetic Background Drives Transcriptional Variation in Human ...
    We found that genetic differences between individual donors were the major cause of transcriptional variation between lines.
  94. [94]
    Allen Institute for Cell Science Releases Gene Edited Human Stem ...
    Nov 30, 2016 · The Allen Institute for Cell Science has released the Allen Cell Collection: the first publicly available collection of gene edited, fluorescently tagged human ...Missing: variability | Show results with:variability
  95. [95]
    Deep immune profiling of COVID-19 patients reveals distinct ...
    We investigated the immune features that drive this COVID-19 immune signature. Given the role of CD8 T cells in response to viral infection, we focused on this ...<|separator|>
  96. [96]
    [PDF] 2020 ANNUAL REPORT | Allen Institute
    If scientists can understand the. “successful” immune responses that accompany a mild or moderate case of the virus, and which aspects of those responses fail ...
  97. [97]
    Data Core - NIH RePORTER
    A central aspect of our approach is the generation of a complete brain and body connectome of the larval zebrafish. This map, the first such map in any ...
  98. [98]
    BRAIN-Affiliated Investigators Receive Prestigious HHMI and Lasker ...
    Sep 28, 2021 · Five awardees are BRAIN-funded scientists tackling tough questions on brain function and disorders through cutting-edge approaches in genetics.
  99. [99]
    Open Science Tools - Allen Institute
    Our open data and resources are made with the users in mind. The Allen Institute formats, visualizes and publishes its datasets and materials to be widely ...
  100. [100]
    New on the Allen Cell Explorer
    With 19 cell lines targeting 16 key structures, the Allen Cell Collection now characterizes many of the organelles in human stem cells.Missing: statistics | Show results with:statistics
  101. [101]
    allen institute for cell science - Allen Cell Explorer
    The Allen Institute for Cell Science presents the Allen Cell Explorer. A data portal for the cells, cell biology, data and tools made freely and publicly ...
  102. [102]
    Human Immune System Explorer
    The Human Immune System Explorer is a portal for exploring the Allen Institute for Immunology's research, analyses, visualization tools, data and other ...Missing: 2016 | Show results with:2016
  103. [103]
    Allen Institute healthy human immune cell atlas scales to over 16 ...
    Oct 22, 2024 · A high-resolution scRNA-seq resource comprising over 16 million peripheral immune cells from more than 300 healthy individuals aged 25 to 90 years.<|control11|><|separator|>
  104. [104]
    Welcome to the Allen SDK — Allen SDK dev documentation
    The Allen Software Development Kit houses source code for reading and processing Allen Brain Atlas data. The Allen SDK focuses on the Allen Brain Observatory, ...<|control11|><|separator|>
  105. [105]
    Mapping the brain to improve lives - Allen Institute
    Jul 17, 2025 · A collaborative effort between UW and the Allen Institute is creating a first-of-its-kind brain atlas, paving the way for breakthroughs in brain health.
  106. [106]
    Allen Discovery Center for Human Brain Evolution
    The Allen Discovery Center for Human Brain Evolution at Boston Children's Hospital and Harvard Medical School. Active 2017 – Present.Missing: Initiative | Show results with:Initiative
  107. [107]
    A multimodal cell census and atlas of the mammalian primary motor ...
    Oct 6, 2021 · ... participating institutions: Allen Institute for ... Brain Cell Data Center (BCDC), Overall BICCN organization and data, www.biccn.org.
  108. [108]
  109. [109]
    Allen Institute for Immunology partners with Lilly to better understand ...
    The Allen Institute for Immunology will be launched in 2018 with a contribution from founder and philanthropist, the late Paul G. Allen. The data and tools ...Missing: establishment date
  110. [110]
    Allen Institute and BioMarin team up to develop gene therapies for ...
    Apr 28, 2021 · The Allen Institute and BioMarin will collaborate to create gene therapies for rare CNS diseases using engineered AAVs with cell-specific ...Missing: Genentech | Show results with:Genentech
  111. [111]
    Allen Institute builds research platform on Google Cloud
    Jun 1, 2022 · Science is a collaborative activity. Research is a team activity involving multidisciplinary teams. HISE supports all phases of the research ...<|control11|><|separator|>
  112. [112]
    $$10 million grant funds infection-focused center | Welcome to Bio-X
    The Allen Discovery Center at Stanford University for Multiscale Systems Modeling of Macrophage Infection will be directed by Markus Covert, PhD, associate ...<|separator|>
  113. [113]
    Allen Institute | Research profile | Nature Index
    A collaboration can be between any two institutions or locations co-authoring at least one article in the journals tracked by the Nature Index. The ...
  114. [114]
    Hardware - Toolkit - brain-map.org
    Custom instrumentation has been created for specialized research purposes at the Allen Institute, such as integrated imaging, behavior and recording studies.Missing: transfer | Show results with:transfer
  115. [115]
    An automated pipeline for understanding how the brain is wired
    Researchers at the Allen Institute built a high-throughput electron microscopy pipeline called piTEAM: parallel imaging transmission electron automated ...Missing: technology transfer hardware
  116. [116]
    Mapping the human brain: a global collaboration | EMBL
    Oct 25, 2022 · A global collaboration, funded by NIH, aims to map 200 billion human brain cells by type and function, using data from various institutions. ...Missing: DeepMind | Show results with:DeepMind
  117. [117]
    Mapping the whole human brain: Allen Institute to lead global ...
    Sep 22, 2022 · The scientists will develop new methods that use a high-resolution microscope to visualize specific kinds of cells in the mouse brain; these ...Missing: facilities | Show results with:facilities
  118. [118]
    COVID-19 Open Research Dataset Challenge (CORD-19) - Kaggle
    The CORD-19 dataset represents the most extensive machine-readable coronavirus literature collection available for data mining to date. This allows the ...Missing: sharing | Show results with:sharing
  119. [119]
    Allen Institute partners to bring open science to Africa
    Aug 2, 2024 · The TReND-CAMinA course aims to establish the fields of computational neuroscience and machine learning in Africa, nurture a new generation of researchers.Missing: authored papers
  120. [120]
    Next Generation Leaders program returns for 2024 - Allen Institute
    May 13, 2024 · This program is designed to recognize and support emerging and diverse early career researchers and provide a platform for professional development.Missing: global STEM
  121. [121]
    Open Science Week - Allen Institute
    Open science is a set of principles, practices, and standards for making scientific resources openly available to the community, including scientists, students ...