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References
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Pathways to cellular supremacy in biocomputing - NatureNov 20, 2019 · We propose the notion of “cellular supremacy” to focus attention on domains in which biocomputing might offer superior performance over traditional computers.
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Moving Beyond Turing with Living Cellular ComputersApr 9, 2024 · Different types of organisms can be effectively manipulated to implement computing functions such as Boolean logic or distributed algorithms.
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Molecular Computation of Solutions to Combinatorial ProblemsThe tools of molecular biology were used to solve an instance of the directed Hamiltonian path problem. A small graph was encoded in molecules of DNA.Missing: original | Show results with:original
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Emergent digital bio-computation through spatial diffusion and ...Jun 8, 2024 · Biological computing is a promising field with potential applications in biosafety, environmental monitoring, and personalized medicine.
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Speed, dissipation, and error in kinetic proofreading - PNASWe find a new kinetic regime of proofreading in which an exponential speed-up of the process can be achieved at the cost of a somewhat larger error rate.<|separator|>
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ATP-powered molecular recognition to engineer transient ... - NIHJul 21, 2020 · Here we report a modular DNA toolbox allowing to program transient non-equilibrium multicomponent systems across hierarchical length scales.
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[PDF] Algorithmic Self-Assembly of DNA - Caltechto build DNA-based computers in the laboratory, whose energy efficiency, information density, and parallelism may have potential to surpass conventional ...
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DNA Logic Gates for Small Molecule Activation Circuits in CellsFeb 2, 2024 · DNA-based devices such as DNA logic gates self-assemble into supramolecular structures, as dictated by the sequences of the constituent ...
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[PDF] Strong Turing Completeness of Continuous Chemical Reaction ...Aug 29, 2017 · In this paper, we derive from these results the strong (uniform computability) Turing completeness of chemical reaction net- works over a ...
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A synthetic oscillatory network of transcriptional regulators - NatureJan 20, 2000 · Cite this article. Elowitz, M., Leibler, S. A synthetic oscillatory network of transcriptional regulators. Nature 403, 335–338 (2000). https ...
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Folding DNA to create nanoscale shapes and patterns - NatureMar 16, 2006 · Here I describe a simple method for folding long, single-stranded DNA molecules into arbitrary two-dimensional shapes.
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Robust digital logic circuits in eukaryotic cells with CRISPR/dCas9 ...Mar 2, 2016 · We constructed and characterized logic circuits with up to seven independent gRNAs, including repression cascades with up to seven layers.Missing: computing | Show results with:computing
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Bacterial computing with engineered populations - ResearchGateAug 6, 2025 · We describe strategies for the construction of bacterial computing platforms by describing a number of results from the recently completed ...
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A brief history of synthetic biology | Nature Reviews MicrobiologyApr 1, 2014 · 1961–1999: origins of the field. The roots of synthetic biology can be traced to a landmark publication by Francois Jacob and Jacques Monod in ...
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Organic neuromorphic devices: Past, present, and future challengesAug 10, 2020 · The main goal of the field of neuromorphic computing is to build machines that emulate aspects of the brain in its ability to perform complex tasks in parallel.Missing: pre- | Show results with:pre-
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I. Benefits of DNA ComputingDNA vs. Silicon. As mentioned in previous sections, DNA performs parallel operations while conventional, silicon-based computers typically handle operations ...<|separator|>
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Computing with DNA - PMC - NIHFeb 28, 2003 · The computation in Adleman's experiment chugged along at 1,014 operations per second, a rate of 100 Teraflops or 100 trillion floating point ...
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Turing, von Neumann, and the computational architecture of ... - PNASJun 12, 2023 · Turing and von Neumann left a blueprint for studying biological systems as if they were computing machines. This approach may hold the key to answering many ...
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Programmable Biomolecule-Mediated Processors - PMCOct 21, 2023 · An operation typified by a reaction between two DNA strands uses 5 × 10–20 Joules of energy, compared to 10–9 Joules in a silicon-based computer ...Introduction · Dna Logic Circuits · Dna Strand Displacement...
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[PDF] Physical requirements for scaling up network-based biocomputationHere we focus on network-based biocomputation (NBC), a massively parallel approach that benefits from the energy efficiency of biological agents, such as ...
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[PDF] Programmable Biomolecule-Mediated ProcessorsOct 21, 2023 · Last, the information density of DNA is 1 bit per nm3. For videotapes, the density of information is approximately 1 bit per 1012 nm. It is ...
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The unique promise of 'biological computers' made from living thingsJun 5, 2023 · They tend to be far more energy efficient, they sustain and repair themselves, and they are uniquely adapted to processing signals from the ...
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Limits of computational biology - PMC - NIHIf cells lack this ability to make subtle adjustments (as they do in a typical computer simulation) we can expect a progressive accumulation of errors and the ...
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Scaling Up Digital Circuit Computation with DNA Strand ... - ScienceJun 3, 2011 · Using a simple DNA reaction mechanism based on a reversible strand displacement process, we experimentally demonstrated several digital logic ...
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Deoxyribozyme-Based Logic Gates - ACS PublicationsIn this work, we demonstrate deoxyribozyme-based logic gates able to analyze input oligonucleotides and operate as NOT, AND, and XOR gates with an ...
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The fidelity of template-directed oligonucleotide ligation and its ...Abstract. Several different computational problems have been solved using DNA as a medium. However, the DNA computations that have so far been carried out.
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Biohybrid neural interfaces: improving the biological integration of ...Nov 20, 2023 · Biohybrid design enables the engineering of neural interfaces with enhanced functionality and performance.
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[PDF] Memristive Ion Channel-doped Biomembranes as Synaptic MimicsA lipid bilayer formed at the interface of lipid-coated water droplets establishes a two-terminal biomolecular memristor that mimics the structure and ...Missing: bioelectronics | Show results with:bioelectronics
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Self-sustained green neuromorphic interfaces - NatureJun 7, 2021 · Incorporating neuromorphic electronics in bioelectronic interfaces can provide intelligent responsiveness to environments.Results · Green Electronic Components · Frequency-Driven...
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Biomaterials and Electroactive Bacteria for Biodegradable ElectronicsIn this work we give a brief overview of the recent advances in biodegradable electronics with a focus on the use of biomaterials and electroactive bacteria.Missing: 2020s | Show results with:2020s
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Integrating Ion Channels with Bioelectronics for Biotic–Abiotic SystemsApr 26, 2023 · Ion channels span the lipid bilayer and enable the regulated flow of ions and small molecules across the cell membrane. Ion channels can be ...
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Recent advances and opportunities in synthetic logic gates ...Each repressor-promoter pair has been converted into NOT gate function. Out ... Genomic mining of prokaryotic repressors for orthogonal logic gates.The And Gate · The Nor Gate · The Xor GateMissing: seminal | Show results with:seminal
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Contextual dependencies expand the re-usability of genetic invertersJan 13, 2021 · The implementation of Boolean logic circuits in cells have become a very active field within synthetic biology. ... (repressor) and its cognate ...Missing: seminal | Show results with:seminal
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[42]
CRISPR-based gene expression control for synthetic gene circuitsSep 23, 2020 · CRISPR offers new possibilities for synthetic circuit design, using CRISPRa for activation and CRISPRi for repression of gene expression.Missing: rewiring | Show results with:rewiring
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Cell-Free Synthetic Biology Platform for Engineering Synthetic ...Compared to in vivo systems, the cell-free TXTL platform enables rapid prototyping of genetic circuit design using either generic plasmid DNA templates or short ...Missing: biocomputing | Show results with:biocomputing
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Programmable T7-based synthetic transcription factors - PMCAug 30, 2018 · In synthetic biology applications, it is useful for transcription factors to have two key features: they should be orthogonal (influencing only ...
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Genome-scale engineering for systems and synthetic biology - NIHHere, we review current technologies and methodologies for genome-scale engineering, discuss the prospects for extending efficient genome modification to new ...Missing: biocomputers | Show results with:biocomputers
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[46]
A glucose-blue light AND gate-controlled chemi-optogenetic cell ...Feb 9, 2023 · In this study, we present a designed cell system that produces insulin under an AND gate control, which is triggered only in the presence of both high glucose ...Missing: logic | Show results with:logic
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Genetically Encoded Synthetic Beta Cells for Insulin Biosynthesis ...Jan 20, 2022 · A genetically encoded synthetic beta cell, which can sense hyperglycemic conditions to initiate programmed biosynthesis and secretion of insulin is reported.
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[48]
Synthetic biology devices for in vitro and in vivo diagnostics - PMCNov 23, 2015 · Synthetic biology devices, such as engineered gene circuits, bring new capabilities to molecular diagnostics, expanding the molecular detection ...
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[49]
Engineered live bacteria as disease detection and diagnosis toolsOct 24, 2023 · Engineered bacteria as live sensors are being developed as a new class of biosensors for sensitive, robust, noninvasive, and in situ detection of disease onset ...
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[50]
Organoid intelligence (OI): the new frontier in biocomputing and ...'Organoid intelligence' (OI) describes an emerging multidisciplinary field working to develop biological computing using 3D cultures of human brain cells (brain ...
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Off-the-shelf CAR Natural Killer Cell Therapy with Logic Gates Elicits ...Apr 27, 2025 · CAR T-cell therapy has shown success in the treatment of B-cell malignancies, including multiple myeloma and some B-cell leukemias and lymphomas ...
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Synthetic biology approaches for improving the specificity and ...Apr 11, 2024 · This review provides an overview of the current landscape and future prospects of cancer immunotherapy, particularly emphasizing the role of synthetic biology.
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[53]
Multichannel bioelectronic sensing using engineered Escherichia coliJul 29, 2025 · To evaluate our biosensor for heavy metal detection, we exposed the heavy metal-E. coli across various combinations of arsenite and cadmium ...
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[54]
Engineering natural microbiomes toward enhanced bioremediation ...Jun 1, 2024 · Using SuperCC, we construct bioremediation-enhanced synthetic microbiomes based on 18 keystone species identified from natural microbiomes. Our ...
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[55]
Bioremediation through microbes: systems biology and metabolic ...Bioremediation using microbes is an eco-friendly and socially acceptable alternative to conventional remediation approaches.
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[56]
Computational biology predicts metabolic engineering targets for ...We developed a computational pipeline, ecFactory, designed to predict optimal gene targets for enhancing the production of 103 valuable chemicals by ...
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[57]
Synthetic biology and metabolic engineering paving the way for ...Aug 20, 2025 · Synthetic biology and metabolic engineering technologies now allow us to use microorganisms better for making biofuels. Engineers use genetic ...
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[58]
Engineering biology applications for environmental solutions - NatureApr 14, 2025 · Engineering biology applies synthetic biology to address global environmental challenges like bioremediation, biosequestration, pollutant monitoring, and ...
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[59]
Engineering a Cross-Feeding Synthetic Bacterial Consortium for ...This study addresses this issue by engineering a synthetic bacterial consortium (SBC) designed to degrade mixed plastic monomers.
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[60]
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[61]
Gene networks that compensate for crosstalk with crosstalk - NatureSep 6, 2019 · We show that synthetic gene networks can be engineered to compensate for crosstalk by integrating pathway signals, rather than by pathway insulation.
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[62]
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A computational toolbox for the assembly yield of complex ... - NatureDec 14, 2023 · The self-assembly of complex structures from a set of non-identical building blocks is a hallmark of soft matter and biological systems, ...
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[64]
Computing with biological switches and clocksJun 1, 2018 · Here we present a historical perspective on computation by biological systems, with a focus on switches and clocks, and discuss parallels between biology and ...
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[65]
Improving engineered biological systems with electronics and microfluidics - Nature BiotechnologySummary of each segment:
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[66]
Abstraction hierarchy to define biofoundry workflows and operations ...Jul 1, 2025 · Our approach lays the foundation for a globally interoperable biofoundry network, advancing collaborative synthetic biology and accelerating ...
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[67]
Effective design principles for leakless strand displacement systemsDec 13, 2018 · Von Neumann multiplexing achieves reliable computation in the presence of error-prone logic gates: each computing stage contains redundant ...
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[68]
Ethical framework on risk governance of synthetic biologyBecause of the “dual-use” of synthetic biology, some nefarious individuals or bioterrorists may use synthetic biology principles to create biological weapons ...
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[69]
Biosecurity and Dual-Use Research in the Life Sciences - NCBI - NIHDual-use research is biological research with a legitimate purpose that could be misused to pose a threat to public health or national security.
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[70]
Mitigating Risks from Gene Editing and Synthetic Biology: Global ...Oct 16, 2024 · One tabletop exercise conducted by Johns Hopkins University suggested that an engineered bioweapon could kill up to 150 million people worldwide ...
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Equitable Access Biotech → TermApr 23, 2025 · Meaning → Ensuring biological innovations benefit everyone, particularly vulnerable populations, overcoming cost, IP, and systemic barriers.Missing: computing | Show results with:computing
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[72]
Current Status and Challenges of Intellectual Property Protection in ...Dec 18, 2024 · This review provides a comprehensive analysis of the current IP framework governing synthetic biology, highlighting the challenges associated ...Missing: equity | Show results with:equity
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NSF invests $14M in bioengineered systems and ethical ...Aug 30, 2024 · With each project receiving $2 million, the seven research teams will use organoid intelligence systems to address current limitations in ...Missing: costs | Show results with:costs
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Decoding Synthetic Biology Patents: IP Challenges in DNA ...Explore IP challenges in synthetic biology and DNA programming. Secure patents, ensure compliance, and unlock innovation with Einfolge's IP expertise.
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The relevance of sustainable laboratory practices - PMCBenefits of Green Labs. One obvious benefit of sustainable laboratory practices is the reduction in energy consumption and carbon footprint. Another is ...
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[PDF] GREENER principles for environmentally sustainable computational ...Jun 26, 2023 · The carbon footprint of scientific computing is substantial, but environmentally sustainable computational science (ESCS) is a nascent.
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Organoid intelligence and biocomputing advances: Current steps ...This review discusses the technological advancements that enable OI applications, including microfluidics, artificial intelligence, and electrophysiology.
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[81]
Organoid Intelligence and Biocomputing Advances: Current Steps ...Aug 6, 2025 · OI merges electrophysiology, AI, and microfluidics to enhance neuroscience and therapy. Electrophysiology enables organoid communication, AI ...
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[82]
Living intelligence toward human-level models (HLMs) via Organoid ...With advanced 3D interfaces and AI-mediated training protocols, brain organoids are poised to serve as adaptive biological processors and form the core of ...Perspectives · 2. Brain Organoids As Living... · 5. Interdisciplinary...
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NSF invests nearly $32M to accelerate novel AI-driven approaches ...Aug 7, 2025 · NSF invests nearly $32M to accelerate novel AI-driven approaches in protein design, strengthening the U.S. bioeconomy. Awardees will help bring ...Missing: live- | Show results with:live-
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NSF Invests in Bio-inspired and Bioengineered Systems for AI ...Eight research awards will engineer cells, plants and other organisms in living systems and technologies that enhance safety and sustainability. These projects ...
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Multiple-input and multiple-output encoders with DNA-based winner ...This study introduces Winner-take–all (WTA) neural networks based on DNA strand displacement, harnessing neural networks' powerful computational capabilities.
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Advancements in DNA‐Driven Precision Modulation of Cell Surface ...Jun 30, 2025 · Notably, emerging DNA‐based logic circuits and nanorobots offer programmable and autonomous control over receptor signaling. Looking forward, ...
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[87]
Programmable DNA‐Based Molecular Neural Network ...Jun 25, 2025 · This research introduces an augmented matrix-based DNA molecular neural network to achieve molecular-level solving of biological Brusselator ...
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[88]
DNA-based Neural Network Learns from Examples to Solve ProblemsSep 3, 2025 · Caltech researchers have been developing a neural network made out of strands of DNA instead of electronic parts that carries out computation ...
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(PDF) Elementary Morphogenetic Cellular Automata for Modeling ...Apr 16, 2024 · Elementary Morphogenetic Cellular Automata for Modeling Developmental Phenotypes. April 2024. License; CC0. Authors: Bradly Alicea at Orthogonal ...Missing: CACM | Show results with:CACM
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[90]
DNA as a perfect quantum computer based on the quantum physics ...May 21, 2024 · We present theoretical results of DNA that allow a better description of its structure and the operation process in the transmission, coding, and decoding of ...
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[91]
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[93]
The convergence of AI and synthetic biology: the looming delugeJul 1, 2025 · This manuscript examines how AI-driven tools accelerate bioengineering workflows, unlocking innovations in medicine, agriculture, and sustainability.
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[94]
Top 10 Synthetic Biology Trends in 2025 - StartUs InsightsFeb 13, 2025 · Discover the Top 10 Synthetic Biology Trends plus 20 out of 700+ startups in the field and learn how they impact your business in 2025.Gene and Cell Therapy · Gene Editing · Synthetic Vaccines · Biocomputing
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Biological Computers Market Size, Share, Growth & Industry InsightsIn 2025, the biological computers market is witnessing significant shifts, fueled by advancements in synthetic biology, demand for green solutions, and AI ...<|control11|><|separator|>
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[96]
Why biology could be the future of computing and engineeringJun 4, 2025 · A new paper from Macquarie University scientists outlines how engineered biological systems could solve limitations in traditional computing.
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[97]
Cyber-biological convergence: a systematic review and future outlookSep 24, 2024 · The aim of this paper is to systematically review the cyber implications of engineered biology. This includes cyber-bio opportunities and threats.<|control11|><|separator|>
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Direct and indirect impacts of synthetic biology on biodiversity ... - NIHSynthetic biology has the potential to transform biodiversity conservation, both directly and indirectly, in ways that are negative and positive.Missing: Mueller | Show results with:Mueller
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[99]
Engineering biology and climate change mitigation: Policy ... - NatureMar 26, 2024 · This paper reviews EngBio's potential climate contributions to assist policymakers shape regulations and target resources.
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Ethics and responsibility in biohybrid robotics research - PNASJul 23, 2024 · While this new era of living robots presents unprecedented opportunities for positive societal impact, it also poses a host of ethical ...Abstract · Sign Up For Pnas Alerts · 1. Biohybrid Robotics...
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3 challenges to tackling cyberbiosecurity threats after COVID-19Jun 18, 2020 · Eleonore Pauwels · AI can automate the manipulation of medical datasets, expanding a cyberattack's impact through health and biotech industries.
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An Analysis of the Governance, Ethical, Legal, and Social ... - SSRNMay 9, 2025 · This article identifies and analyzes key GELSI concerns raised by biocomputing. It then highlights the inadequacies of current regulatory frameworks.
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[103]
Organoid intelligence (OI): the new frontier in biocomputing and intelligence-in-a-dishDiscusses advances in synaptic plasticity for learning in organoid systems and its role in organoid intelligence (OI).
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[104]
Organoid Intelligence: Toward Biohybrid Architectures Beyond SiliconDescribes cloud connectivity and adaptive feedback loops in organoid intelligence systems for real-time learning.
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[105]
A feedback-driven brain organoid platform enables automated closed-loop training of cortical organoidsFramework integrating electrophysiology for feedback-driven training of brain organoids, supporting bio-digital interfaces.
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[106]
The Donation of Human Biological Material for Brain Organoid Research: An Ethical AnalysisDiscusses proposals for project-specific consent in brain organoid research, emphasizing informed consent from donors.
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[107]
Brain organoids and organoid intelligence from ethical, legal, and social points of viewExplores ethical issues including moral status of organoids with potential consciousness and oversight frameworks.
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[108]
Human Brain Organoid Research and Applications: Legal IssuesReviews legal and ethical aspects, including consent from cell donors and concerns over consciousness in organoids.