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Beta sheet

A beta sheet (also known as a β-sheet or β-pleated sheet) is a common secondary structure motif in proteins, formed by two or more beta strands—extended segments of the polypeptide chain—arranged adjacent to each other and stabilized by hydrogen bonds between the backbone carbonyl oxygen (C=O) of one strand and the amide hydrogen (N-H) of another, creating a rigid, pleated, sheet-like conformation that often exhibits a slight twist.^[1]^[2] This structure allows for maximal hydrogen bonding along the backbone, contributing to the overall stability of the protein fold.^[3] The beta sheet was first proposed in 1951 by Linus Pauling and Robert Corey as a new layer configuration of polypeptide chains, termed the "pleated sheet," based on model-building using known bond lengths and angles, which revealed it as a favorable arrangement due to its ability to satisfy hydrogen-bonding potential without strain.^[3] This discovery followed closely on their proposal of the alpha helix and was inspired by X-ray diffraction patterns from fibrous proteins like silk fibroin, where beta sheets were later confirmed as the dominant structure.^[1]^[4] Early observations of beta-sheet-like patterns date back to the 1930s by William Astbury, but Pauling and Corey's model provided the precise atomic details, including the pleated appearance arising from the zigzag orientation of side chains.^[4] Beta sheets can adopt two main topologies: antiparallel, where adjacent strands run in opposite N-to-C terminal directions, forming a more stable network of hydrogen bonds; and parallel, where strands align in the same direction, often requiring additional stabilizing elements like loops or helices.^[1] In both cases, the sheets are typically twisted due to the chirality of L-amino acids, and edge strands often feature hydrophilic residues to prevent unwanted aggregation.^[2] These structures are ubiquitous in protein architectures, comprising up to 30% of residues in globular proteins and forming the core of beta barrels or sandwiches in domains like immunoglobulins and enzymes.^[1] Beyond structural roles, beta sheets are implicated in diseases involving misfolding, such as amyloid fibrils in Alzheimer's, where cross-beta structures aggregate into insoluble plaques, highlighting their potential for both stability and pathology.^[5] In natural proteins like silk fibroin, extensive beta sheets provide tensile strength, demonstrating their functional versatility across biological systems.^[1]

Fundamentals

Definition and Basic Structure

A beta sheet is a common secondary structure element in proteins, consisting of two or more beta strands aligned laterally to form an extended, sheet-like array stabilized primarily by hydrogen bonds between the carbonyl oxygen and amide hydrogen atoms of the polypeptide backbone in adjacent strands.^[3] These hydrogen bonds occur between strands rather than within a single strand, distinguishing beta sheets from other secondary structures.^[6] Beta strands themselves are stretches of polypeptide chain in an extended conformation, adopting a zigzag pattern that maximizes the distance between consecutive alpha carbons, with characteristic backbone dihedral angles of phi (φ) ≈ -139° and psi (ψ) ≈ +135°.^[7] Typically comprising 2 to 10 such strands, the resulting beta sheet has its backbone atoms roughly coplanar, while the side chains of the amino acid residues project alternately above and below this plane, contributing to the structure's overall stability and accessibility.^[8]^[3] The characteristic "pleated" appearance of the beta sheet arises from the non-coplanar arrangement of the peptide units relative to the alpha carbon atoms, creating a corrugated surface rather than a perfectly flat plane.^[3] In contrast to the alpha helix, where hydrogen bonds form within the same polypeptide chain to stabilize a coiled structure, the beta sheet's inter-strand bonding pattern allows for a more linear, layered organization that facilitates diverse tertiary interactions in proteins.^[6]

Historical Development

The early investigations into protein structures in the 1930s relied heavily on X-ray fiber diffraction techniques applied to fibrous proteins such as keratin from hair and wool, and silk fibroin. William T. Astbury and his collaborators at the University of Leeds identified distinct diffraction patterns, termed "alpha" for unstretched keratin and "beta" for stretched keratin or native silk, suggesting that the beta form involved fully extended polypeptide chains aligned in a planar, zigzag configuration.^[9] These studies indicated residue repeat distances of approximately 3.5 Å in the beta pattern, contrasting with the 5.1 Å in alpha, and highlighted the potential for hydrogen bonding between chains in fibrous assemblies.^[10] Building on this, Kurt H. Meyer proposed in 1936 that silk fibroin consisted of long, extended polypeptide chains analogous to those in cellulose, based on X-ray data showing a highly oriented, crystalline structure with chains running parallel to the fiber axis.^[10] Meyer's model emphasized the role of repeating amino acid units like glycine and alanine in enabling such extended conformations, providing an early conceptual framework for beta-like structures in natural fibers. This work occurred in the pre-DNA era, when protein structure determination depended entirely on empirical X-ray crystallography of accessible fibrous materials like keratin and silk, as globular proteins proved more challenging to crystallize.^[10] Throughout the 1930s and 1940s, debates persisted regarding whether protein backbones favored extended zigzag arrangements, as suggested by Astbury and Meyer, or more compact helical coils to accommodate observed diffraction arcs. These discussions were fueled by incomplete atomic resolution from fiber data and varying interpretations of bond angles in polypeptide chains. The controversy was largely resolved in 1951 when Linus Pauling and Robert B. Corey, using molecular model-building informed by X-ray constraints and stereochemical principles, proposed the beta pleated sheet as a stable secondary structure, featuring hydrogen-bonded, extended strands in a corrugated plane.^[3] Their seminal paper in the Proceedings of the National Academy of Sciences detailed parallel and antiparallel sheet variants, accurately depicting the pleated conformation first observed in silk fibroin and stretched keratin.^[3]

Structural Features

Geometry and Dimensions

The beta sheet is characterized by a highly extended polypeptide conformation where adjacent strands align laterally, forming a pleated structure stabilized by hydrogen bonds between backbone atoms. The inter-strand distance, measured between the axes of adjacent beta strands, is approximately 4.7 Å, allowing for optimal packing and hydrogen bonding in protein structures.^[11] This spacing arises from the geometry of the extended chain and contributes to the overall rigidity of the sheet. Hydrogen bonds in beta sheets typically exhibit a donor-acceptor (N-O) distance of about 2.9 Å and an N-H···O angle of approximately 150° for near-optimal linearity, which maximizes bond strength and structural stability.^[12] Along the direction of each strand, the rise per residue is 3.2–3.4 Å, reflecting the nearly fully extended backbone conformation with phi (φ) and psi (ψ) dihedral angles around -120° to -140° and +120° to +140°, respectively.^[11] The extension of individual strands can be quantified by the distance between consecutive Cα atoms, which is approximately 3.8 Å. This value is derived from the geometry of the peptide unit and the characteristic φ and ψ dihedral angles in the beta region of the Ramachandran plot:

d_{\text{C}\alpha-\text{C}\alpha} \approx 3.8 \, \text{Å}

where the distance results from the bond lengths and angles in the trans peptide configuration combined with the extended torsion angles.^[3] Due to the L-chirality of amino acids, beta sheets exhibit an intrinsic twist of 5–10° per residue in the plane of the sheet, resulting in a right-handed curvature for larger assemblies. This twist prevents edge splaying and enhances hydrophobic packing between strands.^[8] In isolated beta strands, such as those in short peptides, the geometry is less constrained, with greater variability in dihedral angles and inter-residue distances (up to 0.2–0.5 Å deviation) due to the absence of inter-strand hydrogen bonds; in contrast, sheet-embedded strands maintain more uniform dimensions enforced by the network of bonds.^[11] Hydrogen bonds contribute to these fixed distances by aligning the backbones precisely.^[3]

Hydrogen Bonding and Orientation

In beta sheets, stability arises primarily from hydrogen bonds formed between the backbone carbonyl oxygen atoms (C=O) of one β-strand and the amide hydrogen atoms (N-H) of an adjacent strand. These inter-strand hydrogen bonds link the polypeptide chains laterally, creating a network that extends across the sheet without involving side chains in the core bonding pattern. Every residue in the β-strands contributes its backbone groups to this network, with the bonds forming a regular alternation along the strands. Antiparallel β-sheets feature adjacent strands running in opposite N-to-C terminal directions, resulting in a highly uniform, ladder-like pattern of hydrogen bonds that align perpendicular to the strand direction. This configuration allows for optimal linear geometry of the bonds, with the carbonyl oxygen of a residue on one strand pairing directly with the amide hydrogen of the corresponding residue on the adjacent strand, leading to stronger and more uniform interactions compared to other orientations. The straight alignment enhances overall sheet stability through better dipole alignment and closer packing efficiency. In contrast, parallel β-sheets consist of strands oriented in the same N-to-C direction, producing a more distorted, zigzag pattern of hydrogen bonds that slant across the strands. Here, the bonds connect the carbonyl of residue i on one strand to the amide of residue i+1 or i-1 on the adjacent strand, resulting in slightly weaker interactions due to less optimal angles and greater distortion from ideality. This geometry arises from the uniform directionality, which shifts the relative positioning of donor and acceptor groups. The orientation influences the effective width of individual strands within the sheet: antiparallel arrangements lead to a slightly widened strand profile due to the perpendicular bond alignment, while parallel ones exhibit a narrowed profile from the slanted bonds. Antiparallel β-sheets predominate in smaller structures, such as two- or three-stranded ribbons, owing to their superior bonding uniformity, whereas larger sheets often incorporate mixed parallel and antiparallel strands to accommodate topological constraints.

Amino Acid Propensities

The formation of beta sheets is strongly influenced by the intrinsic propensities of amino acids to adopt the extended backbone conformations required for strand alignment and hydrogen bonding. These propensities arise from the interplay between side-chain sterics, hydrophobicity, and backbone flexibility, determining which residues favor incorporation into beta strands. Analyses of protein structures reveal that certain amino acids exhibit high preferences for beta-sheet environments due to their ability to pack efficiently without steric clashes, while others are disfavored because they disrupt the regular geometry. Residues with high beta-sheet propensities include valine (Val), isoleucine (Ile), tyrosine (Tyr), phenylalanine (Phe), and threonine (Thr), primarily because their branched or aromatic side chains promote favorable van der Waals interactions and fit well within the tightly packed hydrophobic core of beta sheets. Beta-branched residues like Val, Ile, and Thr, in particular, minimize steric hindrance in the extended phi-psi angle space of beta strands, enhancing stability through side-chain interstrand contacts. Aromatic residues such as Tyr and Phe further contribute by forming edge-to-face interactions that reinforce sheet packing. These preferences are evident across diverse protein folds, where such residues occur in beta sheets more frequently than expected by chance. In contrast, proline (Pro) and glycine (Gly) display low propensities for beta sheets, as Pro's rigid pyrrolidine ring restricts the backbone to angles incompatible with extended strands, often introducing kinks, while Gly's minimal side chain confers excessive flexibility, favoring turns or loops over rigid sheet structures. This leads to underrepresentation of these residues in beta-sheet regions, where they can destabilize hydrogen bonding patterns if present. Seminal empirical scales, such as the Chou-Fasman parameters derived from statistical analysis of known protein structures, quantify these tendencies; for example, Val has a beta-sheet propensity (Pβ) of 1.70, Ile 1.60, Tyr 1.47, Phe 1.38, and Thr 1.19, while Pro scores 0.55 and Gly 0.75 (values normalized relative to average occurrence). These parameters highlight how sequence composition biases beta-sheet formation, with high-propensity residues nucleating strand extension. To accommodate sequence variations or insertions that mismatch the ideal two-residue repeat of beta strands, local distortions known as beta-bulges occur, where an extra residue on one strand pairs with a single residue on the adjacent strand, temporarily widening the sheet without fully breaking hydrogen bonds. These bulges, classified into types like G1 or classic based on residue positions and conformations, allow proteins to incorporate low-propensity or mismatched residues while preserving overall sheet integrity. Beta-bulges subtly influence sheet geometry by introducing irregular twists, but their primary role is functional adaptation to evolutionary sequence changes.^[13] Statistical surveys of protein databases, such as the Protein Data Bank, indicate that beta-sheet residues are enriched in hydrophobic amino acids, with over 50% classified as such (e.g., Val, Ile, Leu, Phe), reflecting the burial of nonpolar side chains in the protein interior to drive folding and stability. This hydrophobic dominance aligns with the amphipathic nature of beta strands, where alternating patterns expose polar groups to solvent. These amino acid propensities exhibit evolutionary conservation, as site-specific preferences in beta-sheet positions remain stable across protein homologs despite sequence divergence, ensuring structural fidelity through selective pressure on residue types that optimize packing and interactions. Studies on resurrected ancestral proteins confirm that beta-sheet-forming residues like Val and Ile retain high incorporation rates over millions of years, underscoring the ancient origins of these biases in protein evolution.^[14]

Structural Motifs

β-Hairpin Motif

The β-hairpin represents the simplest structural motif within β-sheets, comprising two adjacent antiparallel β-strands connected by a short loop that reverses the polypeptide chain direction.^[15] This motif typically spans 10-16 residues in total, with each strand consisting of 3-5 extended residues and the connecting turn encompassing 2-5 residues.^[15] The turn commonly adopts a type I' or II' β-turn conformation, which facilitates the tight reversal necessary for the strands to align in an antiparallel fashion.^[16] The antiparallel orientation allows for a ladder-like pattern of cross-strand hydrogen bonds, where the carbonyl oxygen of one strand pairs with the amide hydrogen of the opposing strand, typically forming 4-8 such bonds depending on strand length.^[15] These motifs are prevalent in small peptides, where they can fold independently, as well as in the interiors of globular proteins, contributing to local structural stability. A well-characterized example is the 16-residue β-hairpin from residues 41-56 of the B1 domain of streptococcal protein G, which features two short strands linked by a type I' turn and exhibits native-like folding in isolation under certain solvent conditions.^[17] Stability in such hairpins arises not only from the hydrogen bonding network but also from hydrophobic packing of side chains along the non-hydrogen-bonded edges of the strands, where interstrand interactions bury nonpolar residues away from solvent.^[18] Variations in β-hairpin structure include classical forms with tight turns lacking irregularities and those containing β-bulges, where an extra residue disrupts the regular hydrogen bonding pattern, often accommodating sequence-specific features or enhancing flexibility.^[19] These bulges, such as G1 types, are common in natural proteins and can occur at the turn or strand regions, altering the overall geometry while preserving the core antiparallel alignment.^[20]

Greek Key Motif

The Greek key motif represents a prevalent supersecondary structure in protein β-sheets, characterized by four antiparallel β-strands connected in the topological order 1-2-4-3, where strands 1 and 2 are adjacent via a short loop, strands 3 and 4 are similarly connected by a short loop, and the crossover loop between strands 2 and 3 is longer, creating a distinctive crossing pattern that resembles the interlocking design on ancient Greek pottery. This connectivity ensures that strands 1 and 4 are adjacent in space despite being distant in the primary sequence, with all hydrogen bonds forming antiparallel between the paired adjacent strands (1-4, 4-3, 3-2, and 2-1). The motif typically adopts an up-down-up-down orientation in the β-sheet, contributing to a compact, twisted barrel-like architecture with a right-handed shear that enhances stability through interstrand packing. This motif is particularly common in β-sandwich folds, where it serves as a building block for larger structures, as seen in the SH3 domains of signaling proteins, which incorporate two successive Greek key motifs to form an eight-stranded β-barrel stabilized by hydrophobic interactions between the sheets.^[21] In such architectures, the short loops (often 2-5 residues) between strands 1-2 and 3-4 allow tight turns, while the extended crossover loop (typically 10-20 residues) accommodates the spatial rearrangement without steric clashes. Amino acid propensities favor hydrophobic residues in the core for tight packing, with polar residues often at the edges to prevent aggregation.^[22] Evolutionarily, the Greek key motif is widespread in globular proteins, appearing as the topological signature in over 50% of β-barrel and β-sandwich structures surveyed in structural databases, underscoring its role in efficient folding and functional diversity across diverse protein families.^[22] Its prevalence suggests selective pressure for this connectivity, which balances compactness with accessibility for ligand binding in motifs like those in immunoglobulin domains.

β-α-β Motif

The β-α-β motif is a recurring supersecondary structure in proteins, consisting of two parallel β-strands connected by an intervening right-handed α-helix that crosses over on one face of the emerging β-sheet. This arrangement allows the polypeptide chain to form a crossover connection between the strands, with the α-helix positioned to flank the sheet edge, facilitating the extension of parallel β-structures. The motif is characterized by short loops at the junctions: a tight turn between the first β-strand and the α-helix, often featuring a glycine-rich sequence such as Gly-X-Gly, and another loop linking the helix to the second β-strand.^[23] In this motif, hydrogen bonding occurs primarily between the parallel β-strands, forming inter-strand bonds that stabilize the sheet core, while the α-helix contributes to edge capping through its backbone amide and carbonyl groups interacting with the strand termini. The parallel orientation of the strands results in hydrogen bonds that are more uniformly spaced compared to antiparallel arrangements, with the helix providing additional stabilization by shielding one side of the sheet from solvent exposure. This bonding pattern supports the motif's role in building layered β-sheets without requiring tight turns typical of all-β connections.^[24] Topologically, the β-α-β motif promotes the growth of parallel β-sheets by enabling sequential addition of strands in the same direction, as seen in the Rossmann fold of dehydrogenases where multiple such units form a central β-sheet flanked by helices. In the Rossmann fold, the motif repeats to create a six-stranded parallel β-sheet with α-helices on both faces, exemplifying how these units propagate sheet topology in nucleotide-binding domains. The dihedral angles in the β-strands maintain an extended conformation with φ ≈ -120° and ψ ≈ +120°, while the α-helix adopts standard right-handed values of φ ≈ -60° and ψ ≈ -45°, ensuring compatibility with the crossover geometry.^[24] Functionally, the β-α-β motif plays a critical role in coenzyme binding sites, particularly for dinucleotides like NAD and FAD, where the first β-α-β unit contacts the ADP moiety and phosphate groups via conserved residues in the crossover loop. This positioning allows the motif to form a binding pocket that accommodates the cofactor's extended conformation, enhancing enzymatic efficiency in redox reactions.^[23] The motif is highly prevalent in nucleotide-binding domains, appearing in over 10,000 structures in the Protein Data Bank as part of Rossmann-like folds, which represent one of the most ancient and diversified protein architectures. Its conservation across diverse enzymes underscores its evolutionary success in facilitating cofactor interactions essential for metabolism.

β-Meander Motif

The β-meander motif represents a fundamental supersecondary structure in protein architecture, characterized by a series of consecutive antiparallel β-strands linked sequentially by tight hairpin loops, resulting in an up-and-down topology.^[25] This motif typically features two or more strands, often three or four in basic units (e.g., strands 1-2-3 or 1-2-3-4), where each pair of adjacent strands runs in opposite directions, connected by loops of 2-4 residues that adopt type I or type II β-turn conformations to reverse the chain direction.^[26] The connectivity follows a simple (+1, +1) pattern, indicating right-handed crossovers between successive strands, which allows the motif to extend linearly without crossing connections.^[25] Hydrogen bonding in the β-meander is uniform and antiparallel between consecutive strand pairs, with each backbone carbonyl oxygen of one strand forming hydrogen bonds to the amide nitrogen of the adjacent strand, stabilizing the pleated sheet conformation.^[26] These bonds occur in a ladder-like pattern, typically involving at least two to three residues per strand pair, contributing to the motif's rigidity and planarity. Larger β-sheets can be built by tandem repetition of β-meander units, commonly resulting in even numbers of strands (e.g., 4, 6, or 8) that form open or semi-closed sheets.^[25] The motif's simplicity makes it prevalent in all-β class proteins, where it serves as a building block for more complex topologies. A prominent example of the β-meander motif occurs in the constant domains of immunoglobulins, such as the CH1 domain in antibody heavy chains, where sequential antiparallel strands form one of the two β-sheets in the immunoglobulin fold, connected by short loops that position the strands in an up-down-up-down arrangement. In these structures, the first and last strands often pack against each other via hydrophobic interactions, creating a core stabilized by side-chain van der Waals contacts and occasional additional hydrogen bonds from loop residues.^[26] This packing enhances the motif's stability in solvent-exposed environments, as seen in the variable domains of immunoglobulins like the mouse OPG2 heavy chain. The β-meander's prevalence in such domains underscores its role in forming robust, modular β-sheets essential for protein-ligand interactions.

Ψ-Loop Motif

The Ψ-loop (Ψ-loop) motif consists of two antiparallel β-strands connected by a short loop of typically 2-4 residues, in which the loop forms hydrogen bonds to both adjacent strands, resulting in a conformation that resembles the Greek letter ψ. This motif was first systematically described in analyses of protein topologies, highlighting its role as a recurring irregularity in antiparallel β-strands.^[27] The hydrogen bonding in the Ψ-loop features an atypical arrangement where the loop residues form bonds to the backbone amides and carbonyls of the flanking strands, often involving three key interactions that stabilize the protruding loop. In classic Ψ-loops, the sequence often includes a glycine in a key position for conformational flexibility due to its lack of a β-carbon, with adjacent residues typically non-proline to avoid steric hindrance; variants occur with other small or polar residues.^[27] Functionally, the Ψ-loop enables the incorporation of polar or charged residues into hydrophobic β-sheet cores, facilitating interactions with solvent or substrates. A prominent example is found in subtilisin, a serine protease, where the Ψ-loop near the active site accommodates catalytic residues and contributes to substrate binding specificity. Geometrically, this motif causes a local widening of inter-strand spacing by approximately 1–2 Å compared to ideal β-sheets, altering the sheet's curvature and providing a protrusion suitable for functional roles.^[28] Although rare, comprising less than 1% of β-sheet irregularities in known structures, Ψ-loops are disproportionately important in enzyme active sites, where their rigidity from side-chain interactions and exposed main-chain groups support catalysis or cofactor binding, as observed across diverse protein families. Amino acid propensities for key residues in such motifs favor glycine, consistent with patterns in other β-sheet distortions.^[29]

Architectures and Topology

Beta Sheet Architectures in Proteins

Beta sheets serve as the foundational structural elements in a variety of higher-order protein folds, organizing into domain-level architectures that provide stability and functional versatility. Approximately 20% of known protein domains feature beta sheets as their core scaffold, as classified in structural databases like SCOP.^[30] These architectures arise from the packing and twisting of multiple beta strands, often incorporating structural motifs such as beta-hairpins or Greek keys to form compact, robust structures essential for enzymatic activity, ligand binding, and molecular recognition. One prevalent architecture is the beta sandwich, consisting of two twisted beta sheets packed face-to-face in an antiparallel manner, typically enclosing a hydrophobic core. This fold is exemplified by the immunoglobulin domain, where seven to nine strands form two sheets connected by loops, enabling antibody-antigen interactions.^[31] The sandwich geometry enhances stability through extensive inter-sheet hydrogen bonding and van der Waals contacts, making it common in extracellular proteins. Beta propellers represent another key arrangement, featuring a circular array of 4 to 8 beta sheets radiating outward like blades from a central axis, often stabilized by a velcro closure of the first and last blades. WD40 domains illustrate this fold, with seven blades each comprising four antiparallel strands, facilitating protein-protein interactions in signaling pathways.^[32] The propeller's symmetry supports multivalent binding and rotational flexibility. In beta prisms, three beta sheets pack in a triangular prism-like configuration, with each sheet formed by four antiparallel strands, creating binding pockets for carbohydrates. Lectins such as jacalin adopt this fold, where the pseudo-threefold symmetry allows for multiple ligand sites per subunit.^[33] Up-and-down beta barrels form closed cylindrical structures from alternating up and down beta strands, typically 8 to 22 in number, hydrogen-bonded in an antiparallel fashion to create a pore lined by hydrophilic residues. Porins in bacterial outer membranes exemplify this architecture, enabling passive diffusion of small molecules across membranes.^[34] Although primarily an alpha/beta fold, the TIM barrel highlights the role of beta sheets in hybrid architectures, where eight parallel beta strands form a central cylindrical sheet serving as the structural base, surrounded by alpha helices. This arrangement is ubiquitous in metabolic enzymes, underscoring the adaptability of beta sheets in forming stable cores.^[35] These diverse architectures demonstrate how beta sheets, often assembled from recurring motifs, underpin the structural diversity of protein domains.

Topological Arrangements

In beta sheet topology, strands are typically represented in schematic diagrams using arrows that indicate the direction from the N-terminus to the C-terminus, with connecting loops depicted as lines to illustrate chain connectivity and spatial relationships.^[36] These abstract representations, often employing graph theory, simplify the three-dimensional structure into a two-dimensional map where nodes correspond to secondary structure elements and edges denote connections via loops or turns.^[37] Such diagrams facilitate the analysis of strand orientations (parallel or antiparallel) and the overall connectivity patterns without detailing atomic coordinates.^[8] The handedness of beta sheets predominantly exhibits a right-handed twist when viewed along the polypeptide chain direction, a feature arising from the chirality of L-amino acids that minimizes steric clashes and optimizes hydrogen bonding geometry.^[38] This twist is nearly universal in natural proteins, with left-handed twists being rare and typically unstable, as confirmed by energy calculations showing lower free energy for right-handed conformations. The magnitude of this twist varies but is generally around 5–10 degrees per residue, contributing to the compact packing in globular proteins.^[39] Common topological arrangements include the Greek key and beta-meander motifs, which differ in their strand connectivity patterns. In the Greek key topology, four antiparallel strands are connected such that the second and third strands cross over the first and fourth, forming a motif resembling ancient Greek decorative patterns; this is exemplified in proteins like gamma-crystallin.^[40] In contrast, the beta-meander topology involves sequential hairpin connections between adjacent antiparallel strands without crossing, leading to a more linear progression, as seen in retinol-binding protein.^[41] Diagrams of these topologies highlight the distinct loop placements: Greek key loops often bridge non-adjacent strands, while meander loops connect neighboring ones directly. Mixed topologies combine parallel and antiparallel strand pairings, often featuring parallel edges surrounding an antiparallel core to balance stability and flexibility in larger sheets.^[42] This arrangement is common in about 20% of beta sheets, allowing for diverse fold architectures while maintaining hydrogen bond integrity.^[43] For instance, in some alpha/beta domains, outer parallel connections flank a central antiparallel region, enhancing the sheet's curvature.^[44] Classification of these topological arrangements relies on databases like TOPS (Topology Of Protein Structures), which abstracts folds into string patterns based on strand directions and chiralities, and CATH (Class, Architecture, Topology, Homology), which hierarchically groups domains by connectivity at the topology level.^[45] TOPS patterns, for example, encode beta sheets as sequences of up/down arrows with loop indicators, enabling automated comparison across protein structures.^[46] Similarly, CATH's topology level distinguishes beta sheet variants by strand order and orientation, aiding in fold prediction and evolutionary analysis.^[47] The overall twist angle \theta in a beta sheet can be approximated using the relation \theta \approx n \times t, where n is the number of residues along the strand and t is the average twist per residue (typically 5–8 degrees for antiparallel sheets). This formula derives from the cumulative rotation induced by asymmetric dihedral angles in L-amino acid chains, with higher n amplifying the observable curvature in larger sheets.

\theta \approx n \times t

Such quantitative descriptions underscore how local conformational preferences propagate to global topology.^[48]

Dynamics and Stability

Conformational Dynamics

Beta sheets exhibit inherent conformational dynamics characterized by a progressive right-handed twist, arising from the chirality of L-amino acids and steric interactions within the polypeptide backbone. This twist manifests as a systematic rotation between adjacent β-strands, typically on the order of 20–30° per strand pair in antiparallel arrangements, leading to an overall curl that intensifies with increasing sheet size.^[49] In larger β-sheets comprising multiple strands, the cumulative twist can reach up to approximately 180°, contributing to the adoption of curved or barrel-like architectures while maintaining structural integrity.^[8] This dynamic twisting influences the relative orientation of strands and is evident in both isolated sheets and protein contexts, where it accommodates local geometric constraints without disrupting hydrogen bonding networks.^[38] Edge fraying represents another key dynamic feature, involving the partial disruption or weakening of hydrogen bonds at the periphery of β-sheets. These edge hydrogen bonds are inherently less stable than those in the sheet core due to fewer cooperative interactions and greater solvent exposure, resulting in transient breaking and reforming on short timescales.^[50] Such fraying allows for localized flexibility, enabling adjustments in strand alignment while preserving the overall sheet topology. Molecular dynamics (MD) simulations highlight this phenomenon, showing higher occupancy fluctuations at sheet edges compared to interior bonds.^[51] Hydrogen bond fluctuations within β-sheets occur on picosecond to nanosecond timescales, reflecting vibrational modes and librational motions of the backbone amide groups. These rapid dynamics maintain the pleated structure while permitting subtle rearrangements, with root-mean-square fluctuations (RMSF) of backbone atoms typically ranging from 0.5 to 1 Å in stable sheets, as evidenced by NMR relaxation data and MD simulations.^[52]^[53] NMR studies reveal order parameters (S²) close to 0.9 for backbone N-H vectors in β-strands, indicating restricted but present mobility, while MD trajectories confirm correlated strand oscillations coupled through the hydrogen bond network.^[52] In protein folding pathways, β-sheets often nucleate early as modular, local structures in collapsed intermediates, providing a scaffold for subsequent assembly. However, the final register and topological adjustments occur later, allowing strands to slide or realign for optimal packing.^[54] These late-stage dynamics ensure precise inter-strand hydrogen bonding and side-chain accommodation. Temperature plays a critical role in modulating these motions; above 300 K, increased thermal energy enhances fluctuation amplitudes and fraying rates, leading to greater overall sheet flexibility without global unfolding.^[55] This temperature-dependent behavior underscores the balance between rigidity and adaptability in β-sheet function.

Factors Influencing Stability

The stability of β-sheets in proteins is profoundly influenced by hydrophobic burial, where the packing of nonpolar side chains into the core provides the dominant energetic contribution, accounting for approximately 60% of the overall stability in analyzed protein structures.^[56] This burial shields hydrophobic residues from solvent exposure, minimizing unfavorable interactions and driving the collapse of extended strands into compact sheets, as demonstrated in studies of flat single-layer β-sheets where nonpolar surface burial outweighs other factors even at partially exposed positions.^[57] Hydrogen bonding within β-sheets exhibits cooperativity, where the formation of each additional interstrand hydrogen bond strengthens the network, contributing an incremental stability of about 1-2 kcal/mol per bond beyond the initial pair.^[58] This cooperative effect arises from polarization of the amide and carbonyl groups, enhancing bond strength in extended arrays, with experimental measurements in peptide models showing average hydrogen bond contributions of -1.1 ± 1.0 kcal/mol that increase with chain length due to cumulative electrostatic reinforcement.^[59] At the edges of β-sheets, salt bridges between oppositely charged side chains, such as glutamate and lysine, and disulfide bonds between cysteine residues further bolster integrity by anchoring strands against fraying. These interactions, often positioned at strand termini, can increase thermal stability by up to several kcal/mol in designed β-sheet scaffolds, with disulfides providing covalent reinforcement that prevents edge unraveling under stress.^[60] Environmental factors like pH and solvent composition modulate β-sheet stability, with low pH destabilizing structures through protonation of titratable groups such as aspartate and glutamate carboxylates, which disrupts salt bridges and hydrogen bonding networks.^[61] In hyperthermophilic proteins, acidic conditions below pH 4 lead to independent titration of these residues, reducing folding free energy by 0.5-2 kcal/mol per site and promoting partial unfolding of β-sheet domains. Chemical denaturants such as urea compromise β-sheet integrity primarily by forming competing hydrogen bonds with backbone amides and carbonyls, weakening interstrand interactions and facilitating unfolding with a characteristic free energy change (ΔG_unfolding) of 5-10 kcal/mol for small β-sheet motifs like hairpins or three-stranded units.^[62] Urea concentrations above 4 M induce cooperative transitions in these structures, as observed in model proteins where spectroscopic unfolding curves reveal m-values indicating exposure of 20-50 backbone hydrogens to solvent.^[63] Specific mutations introducing β-branched residues, such as valine, isoleucine, or threonine, enhance β-sheet stability by optimizing side-chain packing and restricting conformational entropy in strands.^[64] These residues, with their Cβ branching, favor extended conformations and increase propensity scores by 0.5-1.0 units in statistical analyses of native proteins, leading to elevated melting temperatures with increases of up to 20-30°C observed in some mutated β-sheet designs.^[65]^[66]

Special Forms

Parallel β-Helices

Parallel β-helices represent a distinctive elongated fold in which multiple parallel β-sheets are stacked and twisted into a right-handed cylindrical helix, forming a repetitive, rod-like architecture unique to certain microbial proteins. Each helical repeat, or "rung," comprises one to three short β-strands arranged in parallel orientation, creating a triangular or rectangular cross-section depending on the number of strands per coil. These strands are linked by diverse loops of variable length, which contribute to the overall flexibility and specificity of the structure. Within each β-sheet, hydrogen bonds form in a parallel pattern between adjacent strands, stabilizing the intra-sheet backbone interactions, while the stacking of successive sheets relies on tight packing mediated by side-chain hydrophobic contacts and van der Waals forces rather than direct backbone hydrogen bonds between sheets. This arrangement allows for a compact core with exposed loops that can accommodate functional residues. The parallel hydrogen bonding aligns with patterns observed in other parallel β-sheet assemblies, emphasizing the geometric regularity of the fold. The resulting helix typically exhibits a pitch of approximately 4.8 Å per rung, enabling a gradual helical twist, with an overall diameter ranging from 15 to 25 Å and lengths that can extend up to 100 Å based on the number of repeats. Prominent examples include the ice-nucleation proteins from bacteria such as Pseudomonas syringae, where the β-helix facilitates ice crystal formation, and pectate lyases from Erwinia species, which degrade plant cell walls using the extended scaffold for enzymatic activity.^[67]^[68]^[69]^[70] Evolutionarily, parallel β-helices are prevalent in proteins associated with bacterial pathogenesis and environmental adaptation, with phylogenetic analyses indicating their dissemination through horizontal gene transfer among pathogens, allowing rapid acquisition of virulence-related traits across diverse microbial lineages.^[71]^[72] Beta barrels represent a class of closed beta sheet architectures in which a single beta sheet twists and coils to form a cylindrical structure, with the first and last strands connected via hydrogen bonds to enclose the sheet. These structures typically comprise 8 to 22 antiparallel beta strands, arranged in a barrel-like topology that provides a stable scaffold for diverse protein functions, including enclosure of active sites or formation of pores.^[73] The barrel's interior often features hydrophobic residues, while the exterior is hydrophilic, facilitating solubility in aqueous environments or membrane integration.^[74] The topology of beta barrels is characterized by two key parameters: the number of strands (n) and the shear number (S), which quantifies the cumulative shift in residue registry between consecutive strands along a hydrogen-bonded seam, thereby determining the barrel's tilt relative to its central axis. For instance, up-and-down beta barrels, where strands alternate direction without complex crossovers, exhibit a shear number of +6, as seen in proteins like papain.^[74] Connections between strands in these barrels often follow Greek key patterns, involving characteristic loop geometries such as -3x (tight turn connecting adjacent strands across the sheet) and +1x (simple hairpin turns), which promote efficient packing; however, some barrels incorporate mixed connections, blending Greek key elements with parallel strand pairings or psi-loop motifs for varied stability and function.^[73] A representative example is green fluorescent protein (GFP), where an 11-stranded antiparallel beta barrel encases the chromophore, shielding it from quenching by the solvent. Variants of beta barrels include open forms like the beta clip, which consists of two orthogonally packed beta sheets connected by loops, resembling a clipped or horseshoe shape rather than a fully closed cylinder. This architecture, formed by a long beta-hairpin folded upon itself at two points, appears in proteins such as those with SET domains, allowing flexibility in ligand binding.^[75] In transmembrane contexts, beta barrels often function as pore-forming channels, with 16 to 22 strands spanning the lipid bilayer; the porin from Rhodobacter capsulatus exemplifies this, forming a trimeric 16-stranded antiparallel beta barrel that permits passive diffusion of small hydrophilic molecules across the outer membrane. The overall stability of these structures relies on interstrand hydrogen bonds that seal the seam, supplemented by van der Waals interactions and, in membrane variants, lipid contacts that anchor the barrel.^[73]

Biological and Pathological Roles

Functional Roles in Proteins

Beta sheets serve as essential structural scaffolds in many enzymes, providing rigidity and stability to support catalytic functions. For instance, in triosephosphate isomerase (TIM), the beta sheets within the TIM barrel fold form a robust core that anchors the active site, enabling efficient interconversion of dihydroxyacetone phosphate and glyceraldehyde-3-phosphate.^[76] This architecture exemplifies how beta sheets contribute to the mechanical framework necessary for enzymatic activity in metabolic pathways. The flat, extended surfaces of beta sheets often facilitate ligand binding by presenting accessible interfaces for molecular interactions. In lectins, such as those with beta-prism folds, the concave or flat faces of antiparallel beta sheets create shallow binding pockets that recognize carbohydrates with high specificity, playing key roles in cell adhesion and immune responses.^[77] In structural proteins like silk fibroin, beta sheets confer exceptional mechanical properties, including high tensile strength due to extensive inter-strand hydrogen bonding networks. The crystalline beta sheet domains in Bombyx mori silk enable it to withstand significant stress, achieving breaking strengths up to 1 GPa, which underlies its use in natural fibers for toughness and durability.^[78] Beta sheets also participate in allosteric regulation, where their conformational flexibility allows signal transmission across protein domains. In allosteric proteins, transitions between tense and relaxed states involve twisting or shearing of central beta sheets, propagating effector binding effects to distant active sites and modulating function.^[79] This dynamic aspect enables precise control in regulatory enzymes. In multimeric proteins, beta sheets form critical interfaces that drive oligomerization and assembly. For example, in parvovirus capsids, beta-stranded motifs mediate protein-protein interactions, promoting the formation of stable oligomeric shells that encapsulate the viral genome.^[80] Evolutionarily, beta sheets offer advantages through their ability to pack compactly into diverse topologies, such as barrels and sandwiches, supporting a wide array of functions while maintaining structural integrity. This versatility has led to slower evolutionary rates in beta sheet regions compared to alpha helices, preserving core scaffolds across protein families and facilitating functional diversification.^[81]

Involvement in Pathology

Aberrant formation of beta sheets plays a central role in numerous protein misfolding diseases, where soluble proteins convert into insoluble aggregates that disrupt cellular function and lead to tissue damage. These pathological aggregates often feature extended beta sheet structures that are highly stable due to extensive hydrogen bonding networks. In particular, amyloid fibrils, which are hallmark structures in many such disorders, exhibit a characteristic cross-beta architecture composed of stacked beta sheets where individual beta strands run perpendicular to the fibril axis.^[82]^[83] Amyloid fibrils typically consist of in-register, parallel or antiparallel beta sheets that stack laterally to form protofilaments, as observed in fibrils formed by the amyloid-beta (Aβ) peptide in Alzheimer's disease. In Alzheimer's, Aβ peptides aggregate into plaques with this cross-beta motif, contributing to neuronal toxicity and cognitive decline. Approximately 60 clinical syndromes, including Alzheimer's disease, Parkinson's disease, and type 2 diabetes, are associated with amyloid diseases characterized by beta sheet-rich aggregates (as of 2025).^[83]^[84]^[85] The mechanisms underlying these pathological beta sheet formations often involve nucleation-dependent polymerization, where a rate-limiting nucleation step forms a critical oligomer that then rapidly elongates by templating additional monomers onto the growing beta sheet edge. Hydrogen bond templating stabilizes this process, as incoming monomers align their backbones to form new inter-strand hydrogen bonds, propagating the beta sheet structure. This templating is evident in the self-propagating nature of aggregates, where preformed fibrils seed further assembly.^[86]^[83]^[87] Prion diseases exemplify beta sheet conversion in pathology, where the cellular prion protein (PrP^C), rich in alpha helices, refolds into a beta sheet-enriched scrapie form (PrP^Sc) that templates further conversions. This conformational shift underlies transmissible spongiform encephalopathies, such as bovine spongiform encephalopathy (mad cow disease), leading to neurodegeneration through amyloid-like plaque formation.^[88]^[89]^[89] Beyond Aβ, other examples include tau protein in neurodegenerative tauopathies, where hyperphosphorylated tau assembles into paired helical filaments with cross-beta sheet cores, forming neurofibrillary tangles that correlate with neuronal loss. In transthyretin amyloidosis, the normally tetrameric transthyretin dissociates and refolds into beta sheet-dominant fibrils, depositing in tissues like the heart and causing systemic amyloidosis.^[90]^[91]^[92] Recent post-2020 research has highlighted the potential for beta sheet misfolding in viral pathology, with peptides from the SARS-CoV-2 proteome, including regions of the spike protein, capable of forming amyloid-like beta sheet aggregates that may contribute to inflammation and long COVID symptoms. Further studies as of 2024 have shown that SARS-CoV-2 spike protein can persist in the skull-meninges-brain axis, co-localizing with amyloid precursor protein and inducing neuroinflammation, which may exacerbate neurological sequelae in long COVID.^[93]^[94]

Modern Applications

Prediction Methods

The Chou-Fasman method, introduced in 1978, is a seminal empirical approach for predicting protein secondary structures, including beta sheets, based on the observed propensities of amino acids to form alpha-helices, beta sheets, or turns.^[95] This statistical technique scans the protein sequence for clusters of residues with high beta-sheet propensity (such as valine, isoleucine, and phenylalanine) and assigns beta-sheet conformation if the average propensity exceeds a threshold of 1.05, while considering nucleating segments of at least five residues.^[95] The method achieves approximately 60% accuracy in three-state secondary structure prediction (helix, sheet, coil), though it struggles with distinguishing isolated strands from sheets due to its reliance on local sequence motifs without long-range interactions. Building on propensity-based ideas, the GOR algorithm, developed in 1978, applies information theory to predict secondary structures by calculating conditional probabilities of dihedral angles (phi and psi) given the amino acid sequence and its local environment.^[96] In the GOR method, beta-sheet prediction involves maximizing the information content from sliding windows of 17 residues, weighting contributions from the central residue and its neighbors to estimate the likelihood of extended conformations.^[96] Subsequent versions, such as GOR IV, incorporate multiple sequence alignments to improve accuracy to around 65% for beta sheets, outperforming Chou-Fasman by accounting for evolutionary conservation.^[97] Amino acid propensities, as utilized in these early algorithms, reflect the frequency of residues in known beta-sheet structures from crystallographic data. Modern machine learning approaches have significantly advanced beta-sheet prediction by leveraging large datasets from the Protein Data Bank (PDB). PSIPRED, introduced in 1999, uses neural networks trained on position-specific scoring matrices derived from PSI-BLAST profiles to predict secondary structures with per-residue accuracy exceeding 80% in three states, particularly effective for beta sheets in globular proteins due to its incorporation of evolutionary information.^[97] More recently, AlphaFold2, released in 2020, employs deep learning with attention mechanisms on multiple sequence alignments and structural templates to predict full three-dimensional structures, from which beta sheets are inferred with over 90% accuracy for well-folded regions, as demonstrated in CASP14 benchmarks where it resolved beta-sheet topologies in challenging targets.^[98] These methods excel in capturing nonlocal interactions that stabilize sheets, such as hydrogen bonding patterns between strands. Experimental validation of predicted beta sheets often relies on circular dichroism (CD) spectroscopy, which measures the differential absorption of left- and right-circularly polarized light by proteins in the far-UV range (190-250 nm) to estimate secondary structure content. Beta sheets exhibit characteristic negative bands at approximately 218 nm and a positive band near 195 nm, allowing quantitative deconvolution of spectra using algorithms like DichroWeb or BeStSel to determine sheet fractions with errors typically under 10% for pure samples. CD is particularly useful for monitoring beta-sheet formation in solution under varying conditions, complementing computational predictions by providing direct empirical evidence without requiring crystals. Despite these advances, predicting beta sheets remains challenging due to their strong dependence on tertiary context, where strand pairing and edge-to-edge associations are influenced by distant residues and solvent exposure that local sequence analysis often overlooks. For instance, beta strands in sandwich folds require accurate modeling of inter-strand hydrogen bonds and hydrophobic packing, which can lead to mispredictions in de novo designs or membrane proteins where tertiary constraints differ from soluble globular domains. This context-dependence contributes to lower accuracy (around 70-80%) for isolated beta motifs compared to helices, as tertiary folds dictate strand registry and twist. Recent advances from 2021 to 2025 have introduced diffusion models for de novo prediction of beta-sheet structures, enabling generative sampling of conformations conditioned on sequence or secondary structure motifs. For example, RFdiffusion (2023) uses a denoising diffusion process on protein backbones to predict and generate beta-sheet topologies with high fidelity, achieving success rates over 50% for designed monomers by iteratively refining noisy structures toward native-like sheets.^[99] Similarly, generative models like those in FrameDiff (2023) incorporate secondary structure objectives to predict de novo beta sheets, outperforming traditional methods in fold diversity and accuracy for beta-rich proteins by learning probabilistic distributions from PDB ensembles.^[100] These diffusion-based tools address prediction gaps in novel sequences by simulating folding pathways, with applications in predicting amyloid-like beta aggregates.

Design and Engineering

The design of beta sheets de novo has advanced significantly through computational tools like Rosetta, enabling the creation of novel peptide structures from scratch. A seminal example is Betanova, a 20-residue, three-stranded antiparallel beta-sheet peptide designed in 1998 using a backbone template and sequence optimization to favor hydrogen bonding and hydrophobic packing, which folds into a monomeric structure with high beta-sheet content as confirmed by NMR spectroscopy. Refinements in the 2020s have built on this foundation, incorporating Rosetta's fragment assembly and energy minimization to generate more complex topologies, such as small beta barrels with up to eight strands that achieve atomic-level accuracy and thermal stability exceeding 80°C.^[101] Applications of engineered beta sheets extend to biomaterials, where amyloid-mimicking nanostructures serve as robust scaffolds for tissue engineering and drug delivery due to their fibrillar beta-sheet architecture and mechanical strength. For instance, de novo designed charge-complementary peptide pairs self-assemble into beta-sheet nanofibers with tunable stiffness, mimicking amyloid fibrils while avoiding toxicity.^[102] Similarly, beta-sheet hydrogels, formed by strand-swapped beta-hairpin peptides or modular protein building blocks, exhibit shear-thinning properties ideal for injectable therapeutics, with storage moduli up to 10 kPa and rapid recovery post-deformation.^[103] Key challenges in beta-sheet engineering include preventing off-pathway aggregation, which arises from exposed hydrophobic edges in non-local strand interactions, often addressed by incorporating charged residues or loop optimizations in Rosetta protocols. Stabilization strategies, such as engineered disulfide bridges, have proven effective in directing folding and enhancing solubility, as demonstrated in de novo beta-hairpin designs where disulfides reduce mispairing and boost folded yields to over 90% in expression systems.^[104] Recent progress (2023–2025) leverages AI-driven methods, such as deep learning models integrated with Rosetta, to design self-assembling beta-sheet peptides that form programmable nanostructures, like intracellular supramolecular assemblies from de novo peptides that recruit enzymes for cascade reactions, achieving assembly efficiencies greater than 85%.^[105] Overall, engineered beta-sheet proteins often exhibit folding yields exceeding 80%, reflecting improved design accuracy and biophysical validation through circular dichroism and X-ray crystallography.

References

[1]
The Shape and Structure of Proteins - Molecular Biology of the Cell
Within a year of the discovery of the α helix, a second folded structure, called a β sheet, was found in the protein fibroin, the major constituent of silk. ...
[2]
Hierarchical Structure of Proteins - PDB-101
Beta strands are extended regions of the chain that form hydrogen bonds with neighboring beta strands, forming a beta sheet.
[3]
The Pleated Sheet, A New Layer Configuration of Polypeptide Chains
The Pleated Sheet, A New Layer Configuration of Polypeptide Chains. Linus Pauling and Robert B. CoreyAuthors Info & Affiliations. May 15, 1951.
[4]
The discovery of the α-helix and β-sheet, the principal structural ...
PNAS papers by Linus Pauling, Robert Corey, and Herman Branson in the spring of 1951 proposed the α-helix and the β-sheet, now known to form the backbones ...
[5]
Pauling and Corey's α-pleated sheet structure may define ... - PNAS
In low-pH simulations of all four proteins, we observe the formation of α-pleated sheet secondary structure, which was first proposed by L. Pauling and R. B. ...
[6]
Biochemistry, Secondary Protein Structure - StatPearls - NCBI - NIH
The alpha-helix is a right-handed helical coil held together by hydrogen bonding between every fourth amino acid. Many globular proteins have multiple alpha- ...Missing: source | Show results with:source
[7]
PPS 97' - Beta-Sheet Geometry
Nov 4, 1996 · Typical values are phi = -140 degrees and psi = 130 degrees. In contrast, alpha-helical residues have both phi and psi negative.Missing: standard | Show results with:standard
[8]
II. Basic Elements of Protein Structure - Kinemage
Pauling and Corey ( 1951 ) described the correct hydrogen-bonding patterns for both antiparallel and parallel β sheet, and also realized that the sheets were " ...
[9]
X-Ray studies of the structure of hair, wool, and related fibres. II.
X-Ray studies of the structure of hair, wool, and related fibres. II.- the molecular structure and elastic properties of hair keratin. William Thomas Astbury.Missing: early | Show results with:early
[10]
X-Ray Studies of Protein Structure - Nature
This concept leads naturally to the idea of long chain-molecules like that of cellulose, the structure of which was worked out some years ago by a particularly ...
[11]
The Supramolecular Chemistry of β-Sheets - PMC - PubMed Central
Apr 2, 2013 · The β-strands are spaced approximately 4.7–4.8 Å apart and are approximately 3.3–3.5 Å per residue in length. ... The β-sheets are typically about ...Missing: geometry rise 3.2-3.4 source
[12]
Peptide bond planarity constrains hydrogen bond geometry and ...
Dec 8, 2020 · Most hydrogen bonds are concentrated at donor-acceptor distances of 2.9 Å and Ĥ angles of 155° (Supplementary Fig. S3). Note, our Ĥ angle ...Missing: source | Show results with:source
[13]
A systematic analysis of the beta hairpin motif in the Protein Data Bank
The beta hairpin motif is a ubiquitous protein structural motif that can be found in molecules across the tree of life. This motif, which is also popular in ...
[14]
2 Super-secondary structure - SWISS-MODEL
The latter involves a single residue in the right-handed alpha-helical conformation which breaks the hydrogen bonding pattern of the beta-sheet. This residue ...
[15]
NMR Solution Structure of the Isolated N-Terminal Fragment of ...
NMR Solution Structure of the Isolated N-Terminal Fragment of Protein-G B1 Domain. Evidence of Trifluoroethanol Induced Native-Like .beta.-Hairpin Formation.
[16]
Understanding the key factors that control the rate of β-hairpin folding
Both turn sequence and interstrand hydrophobic side-chain–side-chain interaction have been suggested to be important determinants of β-hairpin stability.
[17]
Four classes of beta-hairpins in proteins - PMC - NIH
We show that beta-hairpins can be divided into four classes, each with a number of members. Hairpins from a single class are readily interconverted.
[18]
The role of a β‐bulge in the folding of the β‐hairpin structure in ...
Dec 31, 2008 · This turn is a type I β-turn plus a G1-type β-bulge. β-Bulges are a common feature of β-sheets. The β-bulge is caused by an extra residue on the ...Missing: classical | Show results with:classical
[19]
Solution structure of the SH3 domain of phospholipase C-gamma
This SH3 domain is composed of eight antiparallel beta strands consisting of two successive "Greek key" motifs, which form a barrel-like structure.
[20]
https://onlinelibrary.wiley.com/doi/10.1110/ps.07101
[21]
https://pubmed.ncbi.nlm.nih.gov/7681365/
[22]
None
Nothing is retrieved...<|control11|><|separator|>
[23]
https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20849
[24]
https://doi.org/10.1038/250194a0
[25]
Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit ...
Mar 27, 2017 · ... psi loop. Psi loops are rare elements in protein structures. The ... Arg314 of domain 3 forms three hydrogen bonds, one with the Met10 ...
[26]
SCOPe: Structural Classification of Proteins — extended. Release ...
Sep 20, 2021 · Classes in SCOPe 2.08: ; 2685877 · a: All alpha proteins [46456] (290 folds) ; 2739516 · b: All beta proteins [48724] (180 folds) ; 2826024 · c: ...
[27]
Common features in structures and sequences of sandwich ... - PNAS
The goal of this work is to define the structural and sequence features common to sandwich-like proteins (SPs), a group of very different proteins now ...
[28]
Structure and function of WD40 domain proteins - Oxford Academic
Abstract. The WD40 domain exhibits a β-propeller architecture, often comprising seven blades. The WD40 domain is one of the most abundant domains and also.
[29]
A novel mode of carbohydrate recognition in jacalin, a Moraceae ...
Jul 1, 1996 · The crystal structure of jacalin with methyl-α-D-galactose reveals that each subunit has a three-fold symmetric β-prism fold made up of three ...<|control11|><|separator|>
[30]
The up-and-down beta-barrel proteins - PubMed - NIH
The up-and-down beta-barrel is a common folding motif found frequently in proteins that bind and transport hydrophobic ligands.
[31]
The TIM-barrel fold: a versatile framework for efficient enzymes
Mar 16, 2001 · The TIM-barrel fold is the most common enzyme fold in the Protein Data Bank (PDB) database of known protein structures. It is seen in many different enzyme ...
[32]
Recursive domains in proteins - PMC - NIH
Each rule is illustrated by two diagrams: (Top) β-Strands are represented by arrows (pointed along the N-to-C direction), and chain connectivity is given by ...
[33]
Detailed explanation of protein topology cartoons - SBRU
These diagrams are two-dimensional schematic representations of protein structures. They represent the structure as a sequence of secondary structure elements.
[34]
Origin of the right-handed twist of beta-sheets of poly(LVal) chains
This right-handed twist is due primarily to intrachain nonbonded interactions. Such interactions between the C gamma 1H3 group of the ith residue and the C ...
[35]
1 Secondary structure and backbone conformation - SWISS-MODEL
Amino acid residues in the beta-conformation have negative Φ angles and the Ψ angles are positive. Typical values are Φ = -140 degrees and Ψ = 130 degrees. In ...
[36]
[PDF] BE.342/442 Tuesday, September 27, 2005 Topic: Beta Sheets
Another important motif is the Greek key, a 4-stranded structure in which beta strands 2 and 3 fold over such that strands 2 and 3 align antiparallel to 1.
[37]
[PDF] Proteins
The β-structure in the form of a “six-blade propeller” in neuraminidase, and a topological diagram of this protein composed of six antiparallel β-sheets. Page ...
[38]
Secondary Structure (2˚) -- Beta Strands
Approximately a quarter of all residues in a typical protein are in beta strands, though this varies greatly between proteins. To view a beta sheet in the KiNG ...
[39]
Beta sheet - Proteopedia, life in 3D
Nov 8, 2022 · Accordingly, beta sheets are classified as parallel, antiparallel or mixed. The antiparallel arrangement of strands is more prevalent.
[40]
III. Classification Of Proteins By Patterns Of Tertiary Structure
Parallel α/β Domains. The largest grouping of structures contains domains organized around a parallel or mixed β sheet, the connections for which form ...
[41]
TOPS: an enhanced database of protein structural topology - PMC
The TOPS database holds topological descriptions of protein structures. These compact and highly abstract descriptions reduce the protein fold to a sequence ...
[42]
TOPS: an enhanced database of protein structural topology
Jan 1, 2004 · This topological description is very effective for protein folds with substantial β sheet content, owing to the well‐defined parallel and ...Introduction · Database Content · Querying The Database
[43]
The CATH database - PMC - NIH
At the C-level, domains are grouped according to their secondary structure content into four categories: mainly alpha, mainly beta, mixed alpha-beta; and a ...
[44]
Theoretical Studies on the Origin of β-sheet Twisting
Right-handed twisting is a fundamental structural feature of β-pleated sheets in globular proteins which is critical for their geometry and function.
[45]
Structure of β-sheets: Origin of the right-handed twist and of the ...
The computed twist, δ, for three- and five-stranded β-sheets formed of CH3CO-(l-Val)6-NHCH3 chains is 22 ° for parallel and 30 ° for antiparallel β-sheets.
[46]
An improved capping unit for stabilizing the ends of associated β ...
Dec 20, 2014 · In addition to the quadrupolar Trp/Trp interaction, a number of hydrogen bonds ... fraying produced by the capping interaction contributes ...
[47]
Molecular Mechanics of Beta-Sheets | ACS Biomaterials Science ...
Feb 19, 2020 · A β-sheet consists of fully extended strands of polypeptide chain segments which strongly interact through hydrogen bonds between the >NH amine ...
[48]
Nanosecond Time Scale Motions in Proteins Revealed by High ...
Nov 14, 2013 · Between these two time scales, small correlated fluctuations of the β-sheet also appear to be allowed. ... Hydrogen Bond Occupancies ...
[49]
Molecular dynamics analyses of cross-beta-spine steric zipper models
Jul 24, 2006 · Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation. ... 0.5 Å) is strongly limited ...<|control11|><|separator|>
[50]
Protein β-Sheet Nucleation Is Driven by Local Modular Formation
We find that the residue propensities are similar for small and large β-sheets as are their interstrand pairing preferences, suggesting that nucleation is not ...<|separator|>
[51]
Impact of β‐Turn Sequence on β‐Hairpin Dynamics Studied with ...
Jul 11, 2012 · For two of three of the higher comparable temperature points (above 300 K), the relaxation times for the transients monitored at 1641 cm−1 ...
[52]
Contribution of Hydrophobic Interactions to Protein Stability - PMC
The hydrophobicity term discussed above depends on the accessible hydrophobic surface area that is removed from contact with water. Consequently, this term will ...
[53]
Hydrophobic Surface Burial is the Major Stability Determinant of a ...
These results demonstrate the dominant contribution of nonpolar surface burial to flat β-sheet stability even at solvent-exposed positions.
[54]
Contribution of hydrogen bonds to protein stability - PMC - NIH
For the 20 of these groups that were hydrogen bonded in the folded protein, the average Δ(ΔG) was −1.1 ± 1.0 kcal mol−1, with a range from −3.6 to + 0.2 kcal ...Missing: delta | Show results with:delta
[55]
Cooperative hydrogen bonding in amyloid formation - Tsemekhman
Jan 2, 2009 · Two pairs of peptides have a binding energy of just −7.8 kcal/mol-of-hydrogen bond, which is 1.3 kcal/mol smaller than the same energy for ...
[56]
hyperstable beta sheets lacking tertiary interactions and turns - PMC
We have found that the mere presence of a disulfide bond near the middle of a short peptide chain is sufficient to nucleate some antiparallel β-sheet structure; ...Missing: breaking | Show results with:breaking
[57]
Carboxyl pKa Values, Ion Pairs, Hydrogen Bonding, and the pH ...
These results demonstrate that the acid pH-dependence of protein stability in these hyperthermophile proteins is due to independent titration of acidic residues ...
[58]
Urea denatured state ensembles contain extensive secondary ... - NIH
Urea denaturation curves were determined for VHP, RNase Sa, and VlsE and the results are shown in Figure 1. These curves were analyzed to calculate ΔG as a ...Missing: delta | Show results with:delta
[59]
A hypothesis to reconcile the physical and chemical unfolding of ...
May 11, 2015 · Urea is also believed to form hydrogen bonds with the amide unit of peptide bonds ... kcal/mol; SH2: ΔGu = 7.36 kcal/mol). The NMR spectra might ...
[60]
Sidechain interactions in parallel β sheets: the energetics of cross ...
Both backbone hydrogen bonding and interactions between sidechains stabilize β sheets. Cross-strand interactions are the closest contacts between the ...
[61]
Mass & secondary structure propensity of amino acids explain their ...
Aug 10, 2017 · It belongs to the set of structurally restricted amino acids composed by {Ile, Pro, Thr, Val}, which have an extremely low probability of ...
[62]
Beta‐helix model for the filamentous haemagglutinin adhesin of ...
Jul 7, 2008 · As the pitch of a β-helix is 4.8 Å (Yoder et al., 1993) ... parallel beta helix in the structure of UDP-N-acetylglucosamine acyltransferase.
[63]
Do Parallel β-Helix Proteins Have a Unique Fourier Transform ...
Although the three parallel β-helix proteins show substantial amounts of β-sheet structure at 1638 cm−1 (26–56%), this characteristic is insufficient to ...Missing: pitch length
[64]
Modeling Pseudomonas syringae ice-nucleation protein as a beta ...
This paper presents a novel model of Pseudomonas syringae ice-nucleation protein (INP) as a beta-helical protein, suggesting a similar fold to antifreeze ...
[65]
Sequence profile of the parallel beta helix in the pectate lyase ...
The parallel beta helix structure found in the pectate lyase superfamily has been analyzed in detail. A comparative analysis of known structures has revealed a ...Missing: ice- nucleation
[66]
RTX proteins: a highly diverse family secreted by a common ...
Apr 29, 2010 · 1), called a parallel β-helix or a parallel β-roll (Baumann et al. ... horizontal gene transfer. Studies involving apx deletion mutants and ...
[67]
Horizontal gene transfer in Histophilus somni and its role in the ...
Nov 23, 2011 · ... horizontal gene transfer had occurred at ... mirabilis have indicated that the proteins form a right-handed parallel β-helix [52–54].
[68]
A six-stranded double-psi β barrel is shared by several protein ...
Feb 15, 1999 · Strand β4 is followed by the second psi loop, which is quite short in both families but has a different length and conformation. The site where ...
[69]
III. Classification Of Proteins By Patterns Of Tertiary Structure
Topology diagrams of the "jellyroll" Greek key β barrels. The Greek key barrels have between 5 and 13 strands, but in all cases they enclose approximately ...<|control11|><|separator|>
[70]
[PDF] PROTEIN FOLDS IN THE ALL-β AND ALL-α CLASSES
The fold of a protein is defined by the arrangement of its major elements of ... The β-clip fold (9, 39) contains a structural core of three two-stranded β ...
[71]
Reflections on the Catalytic Power of a TIM-Barrel - PMC
The repeating α– and β–secondary structural elements of the TIM-barrel provide a constant fixed scaffold onto which many different enzyme active sites may be ...
[72]
Tandem-repeat lectins: structural and functional insights - PMC - NIH
Jun 10, 2024 · The binding site is a shallow cavity within the flat antiparallel β-sheets (Fig. 2). β-prism II lectins include a family of monocotyledonous ...
[73]
On the strength of β-sheet crystallites of Bombyx mori silk fibroin - NIH
We find that water solvent reduces the number and strength of hydrogen bonds between β-chains, and thus greatly weakens the strength of silk fibroin.
[74]
Allosteric transition and binding of small molecule effectors causes ...
When an allosteric protein undergoes the transition between T (tense) and R (relaxed) allosteric states, this central β-sheet undergoes a conformational change.
[75]
A Beta-Stranded Motif Drives Capsid Protein Oligomers of the ...
Particle formation by βI mutants indicated that the basic residues clustered at one face of βI drive VP oligomers into the nucleus preceding and uncoupled to ...Missing: interfaces | Show results with:interfaces
[76]
The Evolution of Protein Structures and Structural Ensembles Under ...
Oct 28, 2011 · Different secondary structural elements also show different rates of evolution, with beta-sheet regions evolving more slowly than helical ...Missing: compact | Show results with:compact
[77]
Structure–activity relationship of amyloid fibrils - ScienceDirect.com
Aug 20, 2009 · Amyloid fibrils composed of cross-β-sheet structure are the pathological hallmarks of several diseases including Alzheimer's disease, but are ...
[78]
Amyloid beta: structure, biology and structure-based therapeutic ...
Jul 17, 2017 · Multiple quantum solid-state NMR indicates a parallel, not antiparallel, organization of beta-sheets in Alzheimer's beta-amyloid fibrils.
[79]
Amyloid peptide pores and the beta sheet conformation - PubMed
Over 20 clinical syndromes have been described as amyloid diseases. Pathologically, these illnesses are characterized by the deposition in various tissues ...
[80]
Aggregation and structure of amyloid β-protein - ScienceDirect.com
Originally, a nucleation-dependent polymerization model has been used to explain the mechanisms of Aβ fibril formation in vitro (Jarrett and Lansbury, 1993 ...
[81]
The Self-Assembly of the Amyloid-β(25–35) Peptide - ScienceDirect
Aug 8, 2012 · These aggregates were composed of Aβ(25–35) peptides in an extended conformation kept together by hydrogen bonds among the backbones. These ...Results · Dimer: A Majority Of Hairpin... · Supporting Material<|control11|><|separator|>
[82]
The Structure of the Infectious Prion Protein and Its Propagation
PrP C is a regular, GPI-anchored protein that is expressed on the cell surface of neurons and many other cell types.
[83]
Modeling of human prions and prion diseases in vitro and in vivo
... (PrPSc) is derived from the normal or cellular PrP (PrPC) through a conformational transition of α-helices into β-sheets without any covalent modification.
[84]
Beta-sheet assembly of Tau and neurodegeneration in Drosophila ...
Tauopathies are human neurodegenerative diseases that are characterized by the ordered assembly of Tau protein into abundant filamentous deposits with the cross ...
[85]
Solid-State NMR Studies Reveal Native-like β-Sheet Structures in ...
Sep 20, 2016 · Here we report structural analyses of the β-sheet structure in a full-length transthyretin amyloid using solid-state NMR spectroscopy.
[86]
Modeling transthyretin (TTR) amyloid diseases, from monomer to ...
Jun 6, 2024 · ATTR amyloidosis is caused by deposition of large, insoluble aggregates (amyloid fibrils) of cross-β-sheet TTR protein molecules on the intercellular surfaces ...<|control11|><|separator|>
[87]
Amyloidogenic proteins in the SARS-CoV and SARS-CoV-2 ... - Nature
Feb 20, 2023 · Our results show that these peptides and proteins can form amyloid aggregates. We used circular dichroism spectroscopy to reveal the presence of β-sheet rich ...Missing: post- | Show results with:post-
[88]
De novo design of small beta barrel proteins - PNAS
Mar 10, 2023 · In the 2D maps to the right of the structure cartoons, beta-strand residues are represented as circles labeled by residue number (white circles ...
[89]
De novo design of peptides that coassemble into β sheet–based ...
Sep 3, 2021 · We describe a computational and experimental approach to design pairs of charge-complementary peptides that selectively coassemble into β-sheet nanofibers when ...Missing: Betanova | Show results with:Betanova
[90]
De novo design of modular protein hydrogels with programmable intra
Here, we exploit computational design to specify the size, flexibility, and valency of de novo protein building blocks, as well as the interaction dynamics ...
[91]
De novo design and directed folding of disulfide-bridged peptide ...
Mar 22, 2022 · However, achieving precise intermolecular disulfide pairing is still a great challenge for both chemical synthesis and computational de novo ...
[92]
Intracellular artificial supramolecules based on de novo designed ...
Jun 7, 2021 · We report a self-assembling peptide, Y15 (YEYKYEYKYEYKYEY), which readily forms β-sheet structures to facilitate bottom-up synthesis of functional protein ...