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Bio-layer interferometry

Biolayer interferometry (BLI) is an optical label-free biosensing technique that enables real-time analysis of biomolecular interactions by monitoring wavelength shifts in the interference pattern of white light reflected from a biosensor surface coated with an immobilized ligand.^[1]^[2] As the analyte binds to the ligand, it alters the thickness of the biolayer, producing measurable changes in the refractive index that correspond to association and dissociation kinetics, allowing calculation of binding affinity constants such as the equilibrium dissociation constant (K_D).^[3]^[1] This technology operates on the principle of a Fabry–Pérot interferometer, where disposable dip-and-read biosensors are immersed in sample solutions contained in microplate wells, facilitating fluidics-free measurements without the need for surface regeneration between runs.^[3]^[2] Key features include high throughput via parallel monitoring of multiple sensors (up to 16 or 96 simultaneously, depending on the instrument), compatibility with crude samples, high concentrations of additives like DMSO or glycerol, and minimal sample volumes as low as 4–40 μL.^[1]^[2] Compared to traditional methods like surface plasmon resonance (SPR), BLI offers advantages in ease of use, reduced maintenance, and versatility for diverse sample types, making it accessible even for users with limited biochemical expertise.^[3]^[2] BLI finds extensive applications in drug discovery and development, including kinetic characterization of protein–protein interactions, antibody and nanobody screening through competition and epitope binning assays, structure-activity relationship (SAR) analyses, and quality control in biopharmaceutical production.^[3]^[2] It is also employed for measuring binding affinities of therapeutic candidates to targets, optimizing cell line expression, and target fishing in library screening, with protocols often completable in under three hours to support rapid iteration in research workflows.^[3]^[2]

History and Development

Origins and Invention

The conceptual origins of bio-layer interferometry (BLI) trace back to the late 1990s, when the biotechnology field increasingly demanded label-free detection methods for real-time monitoring of biomolecular interactions, prompting exploration of optical interferometry techniques as alternatives to labeling-dependent assays. Researchers at the time built on established principles of thin-film interferometry to detect refractive index changes associated with biomolecular binding, addressing limitations in sensitivity and throughput for applications like protein characterization.^[4]^[5] The invention of BLI as a specialized dip-and-read biosensing platform is credited to Hong Tan, who founded ForteBio in 2001 to advance interferometric technologies for life sciences. Tan and his team developed the core concept of using disposable fiber-optic tips coated with a bio-layer to measure interference patterns from white light reflections, enabling simple immersion-based assays without fluidics. Key patent filings for these interferometric biosensors, including apparatus for phase-shift detection of analyte binding, occurred between 2001 and 2003, with a foundational application claiming priority on November 6, 2003 (US7394547B2).^[6]^[7]^[8] Early prototypes emphasized quantification of nanoscale thin-film thickness shifts caused by protein immobilization and binding, exploiting white-light interferometry's broad-spectrum coherence to resolve optical path differences between the sensor's internal reference layer and the bio-functionalized surface. This approach allowed for direct, reagentless assessment of binding events in solution, prioritizing ease of use and disposability to minimize carryover.^[8]^[9] Initial demonstrations of BLI prototypes were documented in technical literature and conference proceedings in the early 2000s, underscoring the method's capacity for real-time, regeneration-free monitoring of interactions without surface washing steps. These foundational efforts established BLI's viability for high-throughput biotechnology workflows, distinct from flow-cell-based interferometers.^[10]

Commercialization and Key Milestones

ForteBio, Inc. introduced the first commercial Bio-Layer Interferometry (BLI) system, the Octet, in November 2005, pioneering a dip-and-read format that enabled high-throughput, label-free biomolecular interaction analysis without fluidics.^[11] This innovation facilitated rapid quantitation and kinetic measurements for antibody and protein therapeutics development, marking the transition from research prototypes to practical lab tools.^[12] In December 2011, Pall Corporation announced its acquisition of ForteBio for an undisclosed amount, with the deal closing in February 2012, integrating BLI technology into Pall's broader life sciences portfolio to enhance bioprocess monitoring and purification applications.^[13] This move expanded the technology's accessibility in biopharmaceutical manufacturing. In August 2015, Danaher Corporation completed its $13.6 billion acquisition of Pall, further incorporating the Octet platform into a global network of life sciences tools and accelerating its distribution worldwide.^[14] Key technological advancements included the launch of the Octet RED96 system in February 2011, which supported 96-well parallel assays for improved throughput in kinetics and affinity screening.^[15] By 2010, the Octet QK(e) instrument enhanced detection capabilities for small proteins and peptides, laying groundwork for broader analyte versatility.^[16] In April 2020, Sartorius acquired ForteBio from Danaher for $825 million, rebranding and expanding the platform under its bioprocess solutions division to support advanced drug discovery workflows.^[17] Adoption grew significantly, with over 2,500 Octet systems installed globally by the early 2020s, reflecting its reliability in research and industry settings.^[18] During the COVID-19 pandemic from 2020 to 2022, BLI systems saw expanded use in vaccine development, enabling real-time characterization of SARS-CoV-2 antibodies, epitopes, and binding affinities to accelerate therapeutic and vaccine candidate screening.^[19] Following the acquisition, Hong Tan, the original founder, established Gator Bio in 2020 as a competing provider of BLI technology. This led to patent litigation between Gator Bio and Sartorius, initiated in 2022, with ongoing disputes over intellectual property rights as of 2025.^[20]^[21]

Principle

Optical Interferometry Fundamentals

Optical interferometry is a technique that exploits the interference of light waves to measure minute changes in optical path lengths, originating with the Michelson interferometer invented by Albert A. Michelson in 1881 for precise measurements of the speed of light.^[22] This instrument splits a light beam into two paths using a partially reflecting mirror, allows each path to travel different distances, and recombines them to produce an interference pattern of bright and dark fringes. The pattern arises from the superposition principle, where the electric fields of the waves add constructively or destructively depending on their relative phases. In the 1990s, these principles were adapted to thin-film configurations for biosensing applications, such as integrated Mach-Zehnder interferometers, enabling detection of refractive index variations in biological layers.^[23] White-light interferometry, a variant using broadband illumination rather than monochromatic light, relies on the short coherence length of white light—typically on the order of micrometers—to localize interference to small path differences. When light reflects from a reference surface and a sample surface, the reflected waves superpose only if their optical path lengths match closely, producing high-contrast interference patterns that shift with changes in path difference. Constructive interference occurs when the path difference results in an in-phase alignment (phase difference of 2πm, where m is an integer), maximizing intensity, while destructive interference happens at odd multiples of π, minimizing it. This setup avoids the ambiguity of multiple fringe orders seen in laser-based systems, making it suitable for absolute distance measurements.^[24] In thin-film applications, the core mechanism involves interference between waves reflected from the film's top and bottom interfaces. The phase shift δ introduced by the film's optical thickness is given by

\delta = \frac{2\pi}{\lambda} \cdot 2 n d

where λ is the wavelength of light in vacuum, n is the refractive index of the film, and d is its physical thickness (assuming normal incidence and neglecting reflection-induced phase jumps of π at interfaces). This equation represents the round-trip phase delay for the wave traversing the film twice effectively. Changes in n or d alter δ, shifting the interference spectrum; for white light, this manifests as a wavelength-dependent modulation where the central fringe (zero optical path difference) moves, correlating directly to variations in optical thickness nd. Such spectral shifts provide a quantitative measure of film properties without requiring phase unwrapping.^[24]

Bio-layer Interference Mechanism

In bio-layer interferometry (BLI), white light is directed along an optical fiber to the biosensor tip, where it reflects off two interfaces: an internal reference layer within the tip and the external bio-layer on the tip's surface, where a biomolecule is immobilized. The reflected waves interfere, forming a characteristic spectrum whose pattern depends on the optical path difference between the two layers. When an analyte binds to the immobilized biomolecule, it increases the bio-layer's thickness, shifting the interference spectrum and resulting in a measurable wavelength shift (Δλ) proportional to the change in optical thickness.^[2]^[25] The optical thickness (OT) of the bio-layer is given by the equation

\text{OT} = \Delta n \cdot d,

where \Delta n is the refractive index increment (typically ~0.18 for proteins relative to the medium) and d is the physical thickness of the layer. This results in an empirical calibration where a wavelength shift of approximately 1 nm corresponds to about 1 ng/mm² of bound protein mass on the sensor surface.^[26]^[27] To generate the signal, the full interference spectrum is captured at high frequency and processed using Fourier transform analysis to isolate the dominant wavelength, which is tracked over time and converted directly to nanometer units of bio-layer thickness for real-time monitoring of binding and dissociation. This approach enables detection of mass changes as low as 0.1 pg/mm², providing high sensitivity for biomolecular interactions.^[28] The dip-and-read design of BLI, where the sensor tip is immersed directly in the sample, ensures that the interference signal is unaffected by bulk solution refractive index variations, allowing reliable measurements in complex media such as those containing DMSO or cell lysates. Detection is inherently confined to the bio-layer near the sensor surface, effectively limited to ~200-300 nm depth, which suits surface-immobilized interactions but excludes bulk solution effects or distant molecular events.^[29]

Instrumentation

Biosensor Design and Types

Biosensors in bio-layer interferometry (BLI) consist of disposable fiber-optic tips engineered for real-time, label-free monitoring of biomolecular binding events. These tips, approximately 600 μm in diameter, are coated with a proprietary biocompatible matrix that supports ligand immobilization while reducing non-specific binding through elements like PEG linkers for steric protection.^[30]^[31] The design facilitates the formation of an interference-sensitive biological layer on the tip surface when dipped into analyte solutions, enabling precise measurement of layer thickness changes via reflected white light patterns.^[32] A variety of biosensor types are available from commercial providers such as Sartorius, each tailored to specific immobilization strategies and application needs; analogous options exist from other manufacturers like Gator Bio. Streptavidin (SA) biosensors feature a streptavidin-coated surface for high-affinity capture of biotinylated ligands, including proteins, peptides, and nucleic acids, making them suitable for general kinetic and affinity analyses.^[32]^[33] High-precision streptavidin (SAX or SAX2) variants provide enhanced uniformity and oriented immobilization of biotinylated molecules, ideal for reproducible quantitation and screening with coefficient of variation below 4%.^[32]^[34] Amine-reactive biosensors, such as the second-generation AR2G, enable covalent attachment of ligands via exposed primary amine groups, accommodating untagged biomolecules and offering broad compatibility for custom assays.^[32]^[35] Anti-mouse IgG capture biosensors (AMC or AMC2) are specialized for oriented binding of mouse IgG subtypes or Fc-fusion proteins, supporting high-throughput antibody screening and epitope mapping with dynamic ranges from 0.025 to 8000 μg/mL.^[32]^[35] For challenging low molecular weight analytes under 150 Da, specialty streptavidin small-molecule (SSA) biosensors are employed, featuring optimized surface chemistry to detect weak interactions in fragment screening while maintaining low non-specific binding.^[32]^[35] These biosensors are manufactured using proprietary dip-coating and quality control processes to ensure uniform layer deposition and high reproducibility across lots, with their single-use format allowing parallel operation of 16 to 96 tips in commercial BLI instruments.^[32]^[36] Biosensor selection is guided by analyte characteristics, such as size and required binding chemistry, to optimize signal-to-noise ratios and minimize artifacts from non-specific interactions.^[32]^[35]

System Components and Operation

Bio-layer interferometry (BLI) instruments, exemplified by the Octet® series from Sartorius and systems from Gator Bio, feature multi-channel readers with integrated spectrometers that enable parallel optical analysis of multiple biosensor tips, up to 96 simultaneously in some models.^[37]^[38] These tips, which are disposable optical fibers coated with a biocompatible matrix, are held in a fluidic-free dip station that allows direct immersion into sample wells without the need for pumps or tubing.^[2] The system includes a shaker-incubator for agitation during measurements and temperature regulation modules maintaining conditions from 15°C to 40°C to support assay stability.^[39] Accompanying software, such as Octet® Data Acquisition and Analysis Studio, handles real-time data collection and post-run processing, including curve fitting via global or local models for response alignment.^[40] Operational workflow begins with loading pre-immobilized biosensor tips into the instrument's holder, where they are equilibrated in buffer within the shaker at speeds up to 1000 rpm to promote mixing.^[31] The automated protocol then sequences the tips through predefined steps: initial dipping into buffer wells for baseline acquisition, followed by immersion in analyte-containing wells for the association phase, and return to buffer for dissociation monitoring.^[2] This dip-and-read format, conducted in standard 96- or 384-well plates with sample volumes as low as 40 μL, eliminates carryover and supports rapid setup.^[37] Raw output from the spectrometers captures interference pattern shifts as full spectra, which are processed into binding curves representing effective thickness changes in nanometers versus time.^[31] Baseline subtraction corrects for instrumental drift and environmental noise, yielding aligned sensorgrams for subsequent interpretation.^[41] Throughput is enhanced by the parallel channel design, permitting up to 96 concurrent assays with total run times typically ranging from 30 to 120 minutes, depending on step durations.^[42]

Methodology

Sensor Preparation and Immobilization

Sensor preparation in bio-layer interferometry (BLI) begins with the hydration of disposable fiber-optic biosensor tips, typically by soaking them in assay buffer for at least 10 minutes to remove protective coatings like sucrose and establish a stable baseline.^[31] This step ensures minimal drift during subsequent immobilization and is performed at room temperature or 4°C for extended storage up to 24 hours.^[18] Immobilization of target biomolecules onto the sensor surface follows hydration and employs several affinity-based or covalent methods tailored to the molecule type. The biotin-streptavidin interaction is widely used for its high affinity (K_D ≈ 10^{-14} M), where biotinylated ligands are captured on pre-coated streptavidin biosensors (e.g., SA or SAX tips) by dipping in ligand solutions of 50–300 nM for 5 minutes or overnight at 4°C.^[18]^[43] For covalent attachment, amine-NHS coupling activates carboxyl groups on biosensors (e.g., AR2G tips) with EDC/s-NHS, allowing nucleophilic attack by primary amines on the biomolecule, typically at pH 4.0–6.0 to promote preconcentration.^[44] Antibody immobilization often utilizes Fc capture on anti-human IgG Fc biosensors (e.g., AHC or AHC2 tips), which bind the Fc region to orient the Fab arms outward and preserve binding activity.^[18] Optimization of immobilization focuses on achieving appropriate loading densities to ensure accurate kinetics without steric hindrance or mass transport limitations, targeting a baseline shift of 0.5–1.5 nm (equivalent to approximately 500–1000 response units in surface plasmon resonance).^[31] Concentrations and incubation times are adjusted empirically; for example, 50 nM biotinylated protein yields approximately 0.8 nm shift on streptavidin sensors.^[43] Post-immobilization, blocking with 0.5–2% bovine serum albumin (BSA) or 1 M ethanolamine for 5–10 minutes minimizes non-specific binding by occupying residual reactive sites.^[18] Common challenges include maintaining biomolecule activity, as random orientation in amine coupling can reduce functionality.^[18] Regeneration for sensor reuse, particularly with Fc capture, involves brief dips (3–5 cycles of 5 seconds) in 10 mM glycine at pH 1.5–2.0, though streptavidin methods resist regeneration due to bond stability and may limit reuse to single assays.^[31] Best practices emphasize the use of reference sensors—loaded with non-interacting controls or left blank—for double-referencing to subtract background signals and non-specific binding.^[43] Additionally, adjusting buffer pH (e.g., 7.4–8.0) and ionic strength (150–500 mM NaCl) during preparation enhances attachment stability and reduces drift, with empirical testing recommended for each biomolecule.^[18]

Assay Formats and Data Acquisition

Bio-layer interferometry (BLI) assays typically employ a dip-and-read format, where disposable or regenerable biosensors are sequentially immersed in different solutions within multi-well plates to monitor biomolecular interactions in real time. This format begins with a baseline step, in which the sensor tip is dipped into assay buffer for 30–120 seconds to establish an initial optical signal and normalize for any drift. If not pre-immobilized, the loading step follows, immersing the sensor in a solution containing the target ligand (e.g., biotinylated protein captured on streptavidin-coated tips) for 120–600 seconds to achieve optimal surface density. The association phase then involves dipping the loaded sensor into the analyte solution for 100–1800 seconds, during which binding events cause measurable shifts in the interference pattern. Dissociation occurs by returning the sensor to buffer-only wells for 100–3600 seconds, allowing observation of complex unbinding, with longer times preferred for slow off-rates. An optional regeneration step, using mild acidic or basic buffers, can strip the ligand for biosensor reuse in subsequent cycles, particularly for high-affinity interactions.^[2]^[45]^[18] Variations in assay formats accommodate different experimental goals while maintaining the core dip-and-read workflow. In kinetics mode, full association and dissociation curves are acquired across multiple analyte concentrations to derive rate constants, often using single-cycle kinetics (sequential analyte dips without regeneration) for rapid screening or multi-cycle kinetics (with regeneration between cycles) for higher precision. Endpoint mode focuses on steady-state binding signals at equilibrium, suitable for high-throughput affinity ranking without full kinetic resolution. Concentration series assays involve parallel runs of analyte dilutions (e.g., 2–10 points spanning 0.1 nM to 10 μM) in 96- or 384-well plates to generate titration curves for quantitative analysis. These formats leverage the non-destructive nature of BLI, preserving samples for downstream use.^[2]^[18]^[45] Data acquisition in BLI occurs through continuous monitoring of wavelength shifts (in nanometers) via white light interferometry, capturing the interference pattern between the sensor's internal reference layer and the bio-layer at the tip surface. Instruments like the Octet systems acquire data at sampling rates of 1–10 Hz, enabling high temporal resolution for fast kinetics while generating sensorgrams that plot response over time. Automation is facilitated by robotic handling in plate-based setups, processing up to 96 sensors simultaneously in 96-well formats or higher throughput in 384-well configurations, with orbital shaking (typically 1000 rpm) to enhance mass transport and minimize diffusion limitations. Signal-to-noise ratios exceed 10 for reliable curve fitting, achieved through low-noise optics and reference subtractions.^[2]^[30]^[46] Quality controls are essential for reproducible BLI assays, ensuring data integrity across runs. Sensor matching involves selecting biosensors from the same lot to minimize variability in tip chemistry and optical properties, while buffer matching confirms identical refractive indices and compositions between baseline, association, and dissociation solutions to avoid artifacts. Alignment checks verify proper sensor positioning in wells, and pre-run hydration (10–30 minutes in buffer) stabilizes baselines with drift below 0.1 nm/hour. Reproducibility is quantified by coefficients of variation (CV) under 5% for replicate signals, supported by double referencing (using ligand-free sensors and buffer blanks) to subtract nonspecific binding and instrument noise. These controls, integrated into software templates, enable robust, high-throughput execution.^[2]^[18]^[30]

Applications

Biomolecular Interaction Analysis

Bio-layer interferometry (BLI) is widely employed for the real-time, label-free detection and characterization of biomolecular binding events, including protein-protein interactions, protein-DNA/RNA complexes, antibody-antigen associations, and small molecule-receptor bindings.^[2] This technique allows researchers to observe association and dissociation phases directly through shifts in interference patterns, providing immediate qualitative insights into interaction specificity and occurrence without the need for fluorescent labels or extensive sample preparation.^[44] In antibody development, BLI facilitates epitope binning assays, where monoclonal antibodies are grouped based on competitive binding to distinct regions of an antigen, aiding in the selection of diverse therapeutic candidates.^[47] For instance, cross-competition formats on multi-channel BLI systems enable simultaneous evaluation of antibody panels against a shared antigen, revealing overlapping or unique epitopes through the absence or presence of binding signals during sequential analyte exposures.^[48] Similarly, in drug discovery, BLI supports specificity screening by assessing selective interactions of lead compounds with target proteins versus off-targets, such as confirming high selectivity ratios in kinase inhibitor panels.^[2] In vaccine research, BLI characterizes virus-protein bindings, like SARS-CoV-2 spike protein to host receptors, to identify neutralizing epitopes and optimize immunogen design.^[49] Emerging applications as of 2025 include RNA-binding fragment discovery and characterization of antiviral compounds.^[50]^[51] Qualitative analysis in BLI relies on the shape of sensorgrams, where curve profiles indicate binding stoichiometry and mechanism; for example, a square-wave association phase suggests 1:1 binding kinetics, confirming specific interactions without aggregation artifacts.^[52] This visual confirmation is particularly valuable for off-rate screening in lead optimization, prioritizing compounds with stable dissociation profiles.^[53] BLI's high-throughput capability further enhances its utility, enabling parallel monitoring of hundreds of interactions daily via dip-and-read arrays, which is ideal for fragment-based drug design where rapid screening of low-affinity hits from diverse libraries accelerates hit identification.^[54]

Kinetic and Thermodynamic Measurements

Bio-layer interferometry (BLI) enables the quantification of biomolecular binding kinetics by monitoring real-time changes in interference patterns during association and dissociation phases. The primary kinetic parameters derived from BLI data include the association rate constant (k_{on}), typically in the range of $10^2 to $10^7 M^{-1}s^{-1}, which reflects the speed of complex formation, and the dissociation rate constant (k_{off}), ranging from $10^{-6} to $10^{-1} s^{-1}, indicating the stability of the bound state. These rates are used to calculate the equilibrium dissociation constant (K_D), defined as K_D = \frac{k_{off}}{k_{on}}, often falling in the nanomolar range for typical protein-protein interactions.^[55]^[56] To extract these parameters, raw BLI sensorgrams—consisting of baseline, association, and dissociation curves—are fitted using nonlinear regression algorithms, commonly applying a 1:1 binding model for monovalent interactions. Global fitting across multiple analyte concentrations ensures robust parameter estimation, with software optimizing for goodness-of-fit metrics such as R^2 near 1 and \chi^2 near 0. The dip-and-read format of BLI, which operates without continuous fluid flow, inherently reduces mass transport limitations that can confound rate measurements in flow-based techniques, allowing more accurate k_{on} determination even at higher ligand densities.^[55]^[32] Thermodynamic parameters, such as the changes in enthalpy (\Delta H) and entropy (\Delta S), can be inferred from BLI through temperature-dependent kinetic experiments. By measuring K_D at varying temperatures (e.g., 15–40°C, limited by instrument capabilities), researchers construct van't Hoff plots using the equation:

\ln K_D = \frac{\Delta H^\circ}{RT} - \frac{\Delta S^\circ}{R}

where R is the gas constant and T is the absolute temperature; the slope yields \Delta H^\circ / R, and the intercept provides -\Delta S^\circ / R. This approach reveals the energetic contributions to binding, such as enthalpic-driven interactions in hydrogen-bonding networks.^[57]^[55] In cases of multivalent interactions, BLI data may reflect avidity effects, where multiple binding sites enhance apparent affinity through rebinding during dissociation, leading to slower observed k_{off} values and lower K_D compared to monovalent models. For instance, antibodies targeting repetitive epitopes on Plasmodium falciparum circumsporozoite protein exhibit up to 10-fold tighter binding to full-length antigens versus shorter peptides due to this multivalency. Fitting such data requires caution, often incorporating bivalent models to distinguish intrinsic affinity from avidity.^[58]^[32] BLI achieves high accuracy across a broad K_D range of 10 pM to 1 mM, suitable for most biomolecular interactions, but faces limitations for very fast kinetics (k_{on} > 10^7 M^{-1}s^{-1}), where association phases equilibrate too rapidly for resolution, or very slow kinetics (k_{off} < 10^{-5} s^{-1}), where dissociation signals are obscured by baseline drift or rebinding artifacts. These constraints highlight BLI's strengths in mid-range kinetics while underscoring the need for complementary methods in extreme cases.^[56]

Advantages and Limitations

Distinguishing Features

Bio-layer interferometry (BLI) distinguishes itself as a label-free, real-time optical technique for biomolecular interaction analysis, eliminating the need for fluorescent tags or dyes that can alter binding kinetics, unlike fluorescence-based methods. Its dip-and-read format involves immersing disposable biosensor tips directly into sample solutions, bypassing the fluidic systems required in surface plasmon resonance (SPR) and thereby avoiding issues like clogging or air bubbles that can complicate flow-based assays. This design enables rapid, on-the-fly measurements with minimal sample preparation, providing association and dissociation curves in real time to derive kinetic parameters such as on-rates and off-rates.^[59]^[2]^[45] A key advantage of BLI lies in its versatility for analyzing complex biological matrices, such as cell lysates or serum, where it maintains accuracy due to its insensitivity to bulk refractive index changes or sample viscosity—factors that often interfere with SPR measurements. The technique supports high-throughput screening by processing up to 96 samples in parallel using multi-well plates, making it suitable for applications requiring rapid iteration, in contrast to the lower throughput of isothermal titration calorimetry (ITC), which typically handles only a few samples per run. Additionally, BLI's disposable sensors prevent carryover contamination and eliminate the need for surface regeneration between assays, streamlining workflows and reducing the risk of baseline drift seen in reusable SPR chips.^[59]^[2]^[45] From a cost and efficiency perspective, BLI offers significant advantages over SPR and ITC through its simpler instrumentation and lower operational expenses; setup times are reduced to minutes rather than hours for SPR's fluidic priming, and the broad dynamic range—spanning analytes from 150 Da to large proteins or viruses—provides better sensitivity for small molecule interactions compared to ITC's limitations in detecting weak affinities. These features make BLI particularly appealing for iterative drug discovery processes, where disposable tips minimize maintenance costs and enable consistent, reproducible results without the buffer optimization demands of SPR.^[59]^[2]

Practical Challenges and Comparisons

One significant practical challenge in bio-layer interferometry (BLI) is non-specific binding, particularly in complex biological matrices such as serum or cell lysates, which can lead to inaccurate signal interpretation and requires the use of blocking agents like polysorbate 20, bovine serum albumin (BSA), or sucrose to minimize adventitious interactions.^[32] Additionally, BLI is inherently limited to monitoring surface-confined binding events due to the requirement for ligand immobilization on the biosensor tip, preventing direct observation of bulk solution kinetics without additional assay modifications.^[32] Sensitivity also decreases for small analytes below approximately 150 Da, as the interference signal scales with molecular mass, often necessitating signal amplification strategies such as secondary binding or molecular editing to detect low-molecular-weight interactions reliably.^[32]^[60] Troubleshooting BLI experiments commonly involves addressing curve artifacts, such as irregular baseline drifts or unexpected signal rises during dissociation phases, which may arise from air bubbles in the sample wells—mitigated by thorough buffer degassing and proper sensor hydration—or instrument misalignment, corrected through alignment protocols in the software. Data variability stemming from tip-to-tip heterogeneity in biosensor coating can be reduced via instrument calibration and the use of reference sensors to subtract systematic noise.^[32] These steps ensure reproducible kinetics, though they highlight the need for operator training to maintain assay quality. In comparisons with surface plasmon resonance (SPR), BLI offers simpler operation without microfluidics, lower cost, and higher throughput (up to 96 simultaneous channels), making it ideal for screening, but it is generally less sensitive to subtle conformational changes and provides slightly lower reproducibility for weak affinities compared to SPR's flow-based precision.^[59] Versus isothermal titration calorimetry (ITC), BLI enables rapid kinetic measurements (association and dissociation rates) with minimal sample volumes, but lacks ITC's direct thermodynamic profiling (e.g., ΔH, ΔS), requiring orthogonal validation for full energetic analysis.^[59] Relative to microscale thermophoresis (MST), BLI achieves higher throughput without fluorescent labeling, avoiding potential artifacts from dye attachment, though it mandates immobilization whereas MST supports solution-phase assays.^[59]^[32] Looking ahead, advancements in BLI include integration with microfluidics to enhance spatial resolution and reduce sample consumption for high-density arrays, alongside AI-driven algorithms for automated curve fitting and artifact detection to improve data analysis accuracy in the coming decade.^[32]^[61]

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Biacore vs Octet: Which SPR System is Right for You?
On the other hand, Octet systems utilize bio-layer interferometry (BLI) ... 0.1 RU（≈0.1 pg/mm²）, 0.1 nm（≈1 pg/mm²）. Temperature control accuracy ...
[27]
BLI - intro - BIApages
Bio Layer Interferometry uses optical interferometry as means of detection. The technology uses light waves to infer the thickness of bio layer(s) on the sensor ...Missing: mechanism | Show results with:mechanism
[28]
[PDF] FortéBio Bio-layer Interferometry Kinetic Analysis Tutorial
Compatible with 2-96-well or 384-well sample plates. •. Upto 16 interactions simultaneously in one experiment for Octet RED384. •. Upto 96 interactions ...
[29]
[PDF] Biomolecular Binding Kinetics Assays on the Octet® BLI Platform
Dec 1, 2022 · The tip of each fiber-optic biosensor is coated with a proprietary biocompatible matrix that mini- mizes non-specific binding to the surface.
[30]
https://www.doe-mbi.ucla.edu/wp-content/uploads/2020/01/Kinetic-Presentation.pdf
[31]
Streptavidin (SA) Biosensors - Sartorius
Octet® SA Biosensors biosensors provide robust access to highly sensitive custom biosensors through exploitation of the high affinity streptavidin-biotin ...Missing: dextran | Show results with:dextran
[32]
High Precision Streptavidin 2.0 (SAX2) Biosensors - Sartorius
The Octet SAX2 biosensors are high precision streptavidin biosensors that were specifically developed and qualified for applications in downstream drug ...Missing: HSA | Show results with:HSA
[33]
[PDF] Octet® BLI Biosensor Selection Guide | Sartorius
Anti-Murine IgG Capture 2nd. Generation. K. Q. Mouse IgG or F(ab')2 capture ... Amine Reactive 2G. K. Amine coupling. Various. N/A. FAB2G. Anti-Human Fab-CH1 2nd ...Missing: HSA | Show results with:HSA
[34]
Octet® SAX Biosensors - Sartorius
Octet SAX biosensors are high precision streptavidin biosensors that were specifically developed and qualified for applications in drug discovery and quality ...Missing: HSA | Show results with:HSA
[35]
Biolayer Interferometry (BLI) - Sartorius
BLI provides real-time analysis of biomolecular interactions, including binding kinetics, affinity, and concentration. Compatibility with Diverse Sample Types: ...
[36]
[PDF] Octet® BLI Systems | Sartorius
Temperature Control. 15 – 40 °C. 15 – 40 °C. 15 – 40 °C. 15 – 40 °C. Ambient +4 – 40 °C Ambient +4 – 40 °C. Microplate positions. 1 (96-well). 1 (96-well). 1 ( ...
[37]
Octet® BLI Systems Software | Protein Analysis - Sartorius
Octet Analysis Studio allows for fast and convenient analysis of assays measuring kinetics and affinity values for drug-target binding.Missing: ForteBio | Show results with:ForteBio
[38]
An ultra-high-throughput screen for the evaluation of peptide HLA ...
Mar 31, 2023 · Raw sensor data was aligned at the Y axis by aligning the data to the end of the baseline step, and inter-step correction was used to align the ...<|control11|><|separator|>
[39]
Octet® R8 Protein Analysis System - Sartorius
The 8-channel Octet R8 system performs quantitation and kinetic analysis of up to 96 samples in 30 minutes to 2.5 hours, depending on the specific assay.Missing: components | Show results with:components
[40]
Bio-layer Interferometry for Measuring Kinetics of Protein-protein ...
Feb 18, 2014 · One of the target molecules is immobilized on the biosensor surface. Then sensors are moved to wells containing the binding partner in solution.
[41]
Measuring Protein‐Protein and Protein‐Nucleic Acid Interactions by ...
Feb 2, 2015 · Biolayer interferometry (BLI) is a simple, optical dip-and-read system useful for measuring interactions between proteins, peptides, nucleic acids, small ...Missing: early | Show results with:early
[42]
Use of Bio-Layer Interferometry (BLI) to measure binding affinities of ...
Bio-Layer Interferometry (BLI) is a technique that uses optical biosensing to analyze interactions between molecules. The analysis of molecular interactions is ...
[43]
Basics of Biolayer Interferometry (BLI) - AAT Bioquest
BLI analyzes macromolecular interactions by measuring white light interference shifts from biosensor surfaces to determine binding kinetics.
[44]
Epitope Binning of Monoclonal and Polyclonal Antibodies ... - PubMed
In this chapter, we describe biolayer interferometry (BLI)-based methods to evaluate such epitopes and permit simultaneous analysis of antibodies from several ...
[45]
Epitope binning for multiple antibodies simultaneously using ...
May 28, 2024 · Epitope binning, an approach for grouping antibodies based on epitope similarities, is a critical step in antibody drug discovery.
[46]
Binding behavior of spike protein and receptor binding domain of ...
Jan 17, 2022 · Bio-layer interferometry (BLI) is a label-free optical analytical technique that analyzes the interference pattern of white light reflected ...
[47]
The strengths and limitations of using biolayer interferometry to ...
BLI was convenient and reliable for monitoring equilibrium titrations and thereby quantifying a variety of binding interactions.
[48]
Bio-Layer Interferometry Analysis of the Target Binding Activity of ...
Bio-layer Interferometry (BLI) is a technique that measures the interference pattern of white light that is reflected from a layer of biomolecules immobilized ...
[49]
Fragment screening using biolayer interferometry reveals ligands ...
Dec 7, 2022 · Key advantages of BLI as a fluid-free system are an easier setup and handling in comparison to other biosensor platforms. The present study ...
[50]
https://pubs.rsc.org/en/content/articlelanding/2025/md/d5md00673b
[51]
[PDF] Bio-Layer Interferometry (BLI) - Octet RED96 - OSTR
To monitor the biolayer thickness changes, Octet analyzes the interference of the light beam reflected from the tip of the sensor. In this way, Octet can track ...
[52]
https://pmc.ncbi.nlm.nih.gov/articles/PMC7096710/
[53]
https://www.frontiersin.org/journals/molecular-biosciences/articles/10.3389/fmolb.2020.00098/full
[54]
Applications of Surface Plasmon Resonance and Biolayer ... - NIH
Biolayer interferometry (BLI) mechanism. ForteBio Octet (Menlo Park, CA, USA) is a commonly used BLI platform, and provides similar quantitative information ...
[55]
Molecular Editing-Biolayer Interferometry Technique for Sensitive ...
Jul 29, 2025 · Molecular weight amplification strategies, as demonstrated, are crucial for enhancing sensitivity in BLI and other label-free, mass-sensitive ...Introduction · Experimental Section · Figure 2
[56]
Emerging trends in AI-integrated optical biosensors for point-of-care ...
Oct 10, 2025 · This review presents an overview of the existing and upcoming prospects of AI-integrated optical biosensors with an emphasis on progress in ...