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References
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[1]
A Model for Protein Translation: Polysome Self-Organization Leads ...Multiple proteins can be synthesized simultaneously on a single mRNA molecule, forming a structure called the polysome (or polyribosome) consisting of several ...
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[2]
Polyribosomes - an overview | ScienceDirect TopicsPolyribosomes are groups of ribosomes involved in protein synthesis, connected by mRNA, and are mRNAs with multiple ribosomes attached.
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[3]
Polyribosomes of circular topology are prevalent in mammalian cellsDec 30, 2022 · Polyribosomes, the groups of ribosomes simultaneously translating a single mRNA molecule, are very common in both, prokaryotic and eukaryotic ...
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[4]
The discovery of polyribosomes - PubMedIn this account, I discuss how my laboratory found that multiple ribosomes traverse each mRNA, yielding the structures known as polysomes.
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[5]
The molecular structure of the left-handed supra-molecular helix of ...Nov 7, 2014 · The present study focuses on the analysis of the helical organization of higher-order poly-ribosome assemblies, while previous work analyzed the ...
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[6]
Three distinct ribosome assemblies modulated by translation are the ...Feb 23, 2015 · The ribosome is the basic machinery for shaping cell phenotypes through protein synthesis. Small and large ribonucleoprotein subunits ...
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[7]
Analysis of Translation Initiation During Stress Conditions by ... - NIHMay 19, 2014 · Changes in the polysome profile are indicative of changes or defects in translation initiation that occur in response to various types of stress ...
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[8]
Polysome profiling is an extensible tool for the analysis of bulk ...Polysome profiling is an extensible tool for the analysis of bulk protein synthesis, ribosome biogenesis, and the specific steps in translation.Missing: definition | Show results with:definition
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[9]
Step-wise formation of eukaryotic double-row polyribosomes and ...Feb 29, 2008 · As the coding sequence of luciferase mRNA is 1650 nt residues long, each ribosome covered a 50–70 nt section. In an extended RNA chain 1 nt ...Missing: nucleotides | Show results with:nucleotides
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[10]
Monosomes actively translate synaptic mRNAs in neuronal processesJan 31, 2020 · During protein synthesis, multiple ribosomes can form a structure known as a polysome, which produces multiple protein copies from a single mRNA ...Missing: distinction | Show results with:distinction
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[11]
A MULTIPLE RIBOSOMAL STRUCTURE IN PROTEIN SYNTHESIS | PNASNo readable text found in the HTML.<|control11|><|separator|>
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[14]
Translation initiation in bacterial polysomes through ribosome ...Apr 9, 2018 · During translation, consecutive ribosomes load on an mRNA and form a polysome. The first ribosome binds to a single-stranded mRNA region and ...
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[15]
[PDF] The Structural and Functional Organization of Ribosomal ...Nov 13, 2018 · shows a very compact helical structure with about four ribosomes per turn [15]. ... ultrathin (~40-100 nm) sections of Thermus thermophilus 70S ...Missing: diameter | Show results with:diameter
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[16]
From RNA to Protein - Molecular Biology of the Cell - NCBI BookshelfThe mRNA is then pulled through the ribosome; as its codons encounter the ribosome's active site, the mRNA nucleotide sequence is translated into an amino acid ...<|separator|>
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[17]
Fraction of active ribosomes - Bacteria Escherichia coli - BNID 102344563 bottom paragraph: "The fraction of ribosomes which are actively engaged in peptide synthesis at a given moment was estimated by sucrose gradient analysis, ...
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[18]
Fraction of ribosomes synthesizing protein as a function of ... - PubMedBoth measurements showed that the fraction of ribosomes synthesizing protein increased with specific growth rate, from 30 to 70% over the range studied.Missing: polysomes | Show results with:polysomes
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[19]
Polyribosomes of circular topology are prevalent in mammalian cellsDec 30, 2022 · Even in early electron microscopy studies, it was found that polyribosomes in eukaryotic cells can take a variety of shapes (3–13).
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[20]
Improved Ribosome-Footprint and mRNA Measurements Provide ...Feb 23, 2016 · Studies using microarrays for global polysome profiling indicate that ribosome densities for different mRNAs vary over a 100-fold range ...
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[21]
Step-wise formation of eukaryotic double-row polyribosomes ... - NIHWe found that polysome formation is a long process, requiring many rounds of translation that proceeds via distinct phases, starting from short linear polysomes ...Missing: composition | Show results with:composition<|control11|><|separator|>
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[23]
Translation in Prokaryotes - PMC - PubMed CentralThis review summarizes our current understanding of translation in prokaryotes, focusing on the mechanistic and structural aspects of each phase of translation: ...
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[24]
THE MECHANISM OF EUKARYOTIC TRANSLATION INITIATION ...On most mRNAs, 48S complexes form by the “scanning” mechanism: a 43S preinitiation complex (comprising a 40S subunit, the eIF2–GTP–Met-tRNAMeti ternary complex ...
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[25]
Polysome Fractionation and Analysis of Mammalian Translatomes ...May 17, 2014 · mRNPs, monosome (80S) and polysome fractions were separated using the polysome fractionation method. ... This important distinction between ...
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[26]
Control of translation initiation: a model-based analysis from limited ...We have built a detailed kinetic model of translation initiation in yeast and have used a novel approach to determine the flux controlling steps based on ...
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[27]
Interpreting ribosome dynamics during mRNA translation - PMCThe elongation is a complex polymerization process, where the ribosome moves along the mRNA while reading one codon (three nucleotides) at a time through the ...Missing: polysome spacing
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[28]
The Ribosome Uses Two Active Mechanisms to Unwind mRNA ...The unwinding mechanisms revealed in our studies serve as a quantitative basis for understanding how elongation rates are regulated by structured mRNAs. What ...
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[29]
Dynamics of ribosomes and release factors during translation ... - eLifeJun 11, 2018 · Release factors RF1 and RF2 promote hydrolysis of peptidyl-tRNA during translation termination. The GTPase RF3 promotes recycling of RF1 and RF2.Missing: membrane- polysomes detachment
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[30]
Gene length as a regulator for ribosome recruitment and protein ...Dec 12, 2017 · We explain how the transcript length may play a central role in establishing ribosome recruitment and the overall translation rate of an mRNA.
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[31]
Single-molecule visualization of mRNA circularization during ...Jan 31, 2023 · Most mRNAs are circularized via the eIF4E–eIF4G–PABP interaction, which stabilizes mRNAs and enhances translation by recycling ribosomes.
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[32]
Polysome - an overview | ScienceDirect TopicsPolysomes are structures formed when multiple ribosomes translate a single mRNA, facilitating efficient protein synthesis. They are also known as polyribosomes.
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[33]
Ribosome in action: Translational efficiency and protein foldingBoth translation initiation and elongation contribute to the frequency of ribosome loading in polysomes, which can further change translational efficiency.
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[34]
The intimate relationships of mRNA decay and translation - PMCConsistent with this notion, mRNAs with shortened poly(A) tails only appear to leave polysomes and become targeted to P-bodies when Dhh1, Pat1, and other ...
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[35]
Coping with stress: How bacteria fine-tune protein synthesis ... - NIHIn response to stress conditions or nutrient depletion, bacterial cells reduce ribosome biogenesis, modify ribosomes and components of the translational ...
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[36]
Yeast 18 S rRNA Is Directly Involved in the Ribosomal Response to ...The plot of the fraction of ribosomes found in polysome fractions (calculated from the P/M ratio) against the growth rate (times doubling/h) of each mutant ...
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[37]
Role of eIF2α Kinases in Translational Control and Adaptation to ...Phosphorylation of eIF2α causes inhibition of global translation, which conserves energy and facilitates reprogramming of gene expression and signaling pathways ...
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[38]
A little less aggregation a little more replication: Viral manipulation of ...Jun 16, 2022 · Activation of these kinases initiates the ISR by phosphorylation of eIF2α leading to translation inhibition, polysome disassembly, and the ...
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[39]
Molecular mechanisms of stress granule assembly and disassemblyIn most physiological cases, translation inhibition is initiated through phosphorylation of eIF2α by one or more of the four eIF2α kinases: PKR, PERK/PEK, HRI ...
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[40]
Upstream Open Reading Frames Differentially Regulate Gene ...This review presents key features of uORFs that serve to optimize translational control that is essential for regulation of cell fate in response to ...Ribosome Bypass In The Isr · Ribosome Bypass Is Dependent... · Ribosome Bypass And...Missing: paper | Show results with:paper
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[41]
A New Framework for Understanding IRES-mediated TranslationThis review seeks to set the basic ground rules for the analysis of different initiation pathways that are associated with these new mRNAs.3. Problematic Mrna... · 4. Ires-Mediated Translation · A. Ure2 MrnaMissing: paper | Show results with:paper
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[42]
Deadenylation is a widespread effect of miRNA regulation - PMC - NIHWe show that ∼60% of AGO1 targets are regulated by CAF1 and/or NOT1, indicating that deadenylation is a widespread effect of miRNA regulation.Missing: eviction | Show results with:eviction
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[43]
The mTOR Pathway in the Control of Protein Synthesis | PhysiologyThrough a component of mTORC1 (raptor), mTOR brings about the phosphorylation of targets such as 4E-BP1 and the S6 kinases. Certain agents act through ERK ...
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[44]
Hypoxia-inducible Factor-1α mRNA Contains an Internal Ribosome ...These data indicate that the presence of an IRES in the HIF-1α 5′UTR allows translation to be maintained under conditions that are inhibitory to cap-dependent ...
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[45]
Hypoxia-mediated Selective mRNA Translation by an Internal ...To test the theory that mRNAs important in the adaptive response to low O2 were selectively translated in an IRES-dependent manner, we analyzed a panel of ...Missing: driven | Show results with:driven
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[46]
[PDF] Equations for Steady-State Equilibrium BindingYou can now write the equation in terms of the fraction (fB) of BT bound in the AB complex: (8). This is the equation for a hyperbola. Remember, AT must be ...Missing: polysome regulator
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[47]
Global analyses of mRNA translational control during early ...To understand post-transcriptional regulation during Drosophila early embryonic development, we used sucrose polysomal gradient analyses and GeneChip analysis ...
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[48]
Setting the stage for development: mRNA translation and stability ...Feb 9, 2005 · This review focuses on the mechanisms and functions of regulated maternal mRNA translation and stability in Drosophila
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[49]
Analysis of translation using polysome profiling - Oxford AcademicPolysome profiling has been developed to infer the translational status of a specific mRNA species or to analyze the translatome.Missing: ergosome | Show results with:ergosome
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[50]
Efficient analysis of mammalian polysomes in cells and tissues ...Aug 10, 2018 · We also combine Ribo Mega-SEC with downstream electron microscopy and high-throughput proteomic analysis to characterize isolated polysomes.
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[51]
Genome-Wide Analysis in Vivo of Translation with Nucleotide ...Apr 10, 2009 · Ribosome profiling reports on the precise positions of ribosomes, making it possible to delineate what parts of a transcript are being decoded.
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[52]
Simple and inexpensive ribosome profiling analysis of mRNA ... - NIHJul 8, 2015 · We provide a simplified ribosome profiling method that uses micrococcal nuclease to generate ribosome footprints in crude cellular extracts.Missing: seminal | Show results with:seminal
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[53]
Analysis of translation using polysome profiling - PMC - NIHOct 7, 2016 · Polysome profiling is based on sucrose-gradient separation of translated mRNAs, which are associated with polysomes, from untranslated ones.Missing: size formula
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[54]
Normalized Ribo-Seq for Quantifying Absolute Global and Specific ...Feb 20, 2022 · The use of an evolutionarily distant species as spike-in has already been successfully applied to normalize Ribo-Seq datasets in different ...
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[55]
RiboGalaxy: A browser based platform for the alignment, analysis ...Jan 29, 2016 · Ribosome profiling (ribo-seq) is a technique that uses high-throughput sequencing to reveal the exact locations and densities of translating ...Results · Using Ribogalaxy · Figure 1
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[56]
transformation clustering algorithm and its application in ...Jul 11, 2022 · We optimized this algorithm for the detection and profiling of polyribosomes, which play both constitutive and regulatory roles in gene expression.Missing: peak | Show results with:peak
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[57]
Massively Parallel Polyribosome Profiling Reveals Translation ...Aug 27, 2024 · To determine variants that changed polysome distribution, we used read counts in polysome fractions to build a negative binomial generalized ...
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[58]
Proteome-wide analysis of elongating nascent polypeptide chainsJul 15, 2022 · We describe pSNAP, a method for proteome-wide profiling of NPCs by affinity enrichment of puromycin- and stable isotope-labeled polypeptides.
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[59]
Polyribosome analysis for investigating mRNA translation in ... - NIHFigure 2. The polyribosome association of maternal mRNAs encoding proteins of the BMP signaling pathway is regulated during oocyte maturation and embryogenesis.
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[60]
Mobilization of specific maternal RNA species into polysomes after ...We have examined the accumulation of nonpolysomal maternal RNAs in polysomes after fertilization in Xenopus laevis by measuring the distributions of specific ...Missing: post- | Show results with:post-
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[61]
Poly(A) elongation during Xenopus oocyte maturation is required for ...Abstract. Xenopus oocytes contain several mRNAs that are mobilized into polysomes only at the completion of meiosis (maturation) or at specific times ...
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[62]
CDK Phosphorylation of Translation Initiation Factors Couples ...Dec 11, 2018 · Protein translation in eukaryotes is cell-cycle dependent, with translation rates more robust in G1 phase of the cell cycle than in mitosis.
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[63]
Regulation of mRNA translation during mitosis - PubMed Central - NIHAug 25, 2015 · ... cell cycle, specifically from G1 to S or G2. On the other hand ... polysomes and remain active during mitosis (Qin and Sarnow, 2004).
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[64]
Polysome Translational State during the Cell Cycle - FEBS PressThe ratio of polysomes to single ribosomes was calculated from these figures. Labelling of Total Cell Proteins. At hourly intervals throughout the cell cycle. 5 ...
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[65]
Analysis of Translational Control in the Integrated Stress Response ...In this chapter, we focus on polysome profiling as a tool for establishing and characterizing translation control induced by eIF2 phosphorylation during ...
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[66]
Translation reinitiation at alternative open reading frames regulates ...Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response ... ATF4 over the inhibitory uORF2 ...
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[67]
The integrated stress response | EMBO reportsDuring stressful conditions, elevated translation of ATF4 mRNA facilitates transcriptional upregulation of stress‐responsive genes. ATF4 regulates the ...Missing: polysome | Show results with:polysome
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[68]
Neuronal ribosomes exhibit dynamic and context-dependent ...Oct 21, 2021 · Neurons use the translation of distally localized messenger RNAs (mRNAs) for synapse formation, axon growth, and synaptic plasticity. Although ...<|control11|><|separator|>
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[69]
The prevalence and specificity of local protein synthesis during ...Sep 17, 2021 · Hence, local sites of protein synthesis congregate near synapses along dendrites, giving rise to ~2 translational sites per synapse. The ...Results · Materials And Methods · Metabolic Labeling With Aha...
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[70]
The Coordination of Local Translation, Membranous Organelle ...Jul 14, 2021 · Local translation is clearly imperative for proper synaptic function and plasticity, and mRNAs encoding synaptic proteins are localized to and ...Rna Trafficking To Remote... · Transport Of Mrna To Remote... · Mirnas Fine-Tune Local...
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[71]
Ribosome profiling reveals the rhythmic liver translatome and ...We have used ribosome profiling in mouse liver to measure the translation of mRNAs into protein around the clock and at high temporal and nucleotide resolution.
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[72]
Calorie restriction reprograms diurnal rhythms in protein translation ...Dec 19, 2018 · To extend the knowledge on the molecular mechanisms of CR and circadian clock interaction, we performed polysome profiling in the liver of mice ...
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[73]
Daily rhythms in hepatic polysome profiles and tyrosine ... - PubMedHepatic polysome profiles vary in untreated rats as a function of time of day. The ratio of polysomes to total ribosomes increases from 50 to 73 per cent in ...
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[74]
Myc and mTOR converge on a common node in protein synthesis ...Jun 26, 2013 · Here, we uncover a surprising and important functional link between Myc and mammalian target of rapamycin (mTOR)-dependent phosphorylation of ...Missing: polysomes | Show results with:polysomes
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[75]
CRITICAL ROLE FOR CAP-INDEPENDENT C-MYC TRANSLATION ...Oct 1, 2022 · Dysregulated c-myc is a determinant of multiple myeloma (MM) progression. Translation of c-myc can be achieved by an mTOR-mediated, cap-dependent mechanism or ...
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[76]
c-MYC regulates mRNA translation efficiency and start-site selection ...May 29, 2019 · We show that MYC alters the efficiency and quality of mRNA translation into functional proteins. Specifically, MYC drives the translation of most protein ...
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[77]
Progressive alterations in polysomal architecture and activation of ...Jun 1, 2024 · Neuronal polysomal architecture undergoes progressive compaction in HD mice. Densely packed polysomes in HD are compatible with ribosome stalling phenomena.
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[78]
Model-independent reorganization of translation in TDP-43 ... - bioRxivMay 16, 2025 · Ribosome reorganization into larger polysomes is a common feature in ALS ... (b-c) Representative polysomal profiles and dot blot co-sedimentation ...
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[79]
Increased cytoplasmic TDP-43 reduces global protein synthesis by ...Next, polysome profile was obtained by adsorbance at 254 nm and free ribosomes and polyribosomes were collected in fractions. Immunoblotting experiments on ...
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[80]
Global analysis of polysome-associated mRNA in vesicular ...Jun 21, 2019 · Efficient protein synthesis by a viral mutant defective in mRNA cap methylation. (A) Phosphoimage analysis of an SDS-PAGE of proteins ...
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[81]
Preferential Translation of Vesicular Stomatitis Virus mRNAs Is ... - NIHThese results show that EGFP mRNA expressed from the viral genome is translated much more efficiently than host-derived EGFP mRNA during VSV infection. Analysis ...
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[82]
Reanalysis of ribosome profiling datasets reveals a function ... - NatureFeb 2, 2023 · Our study presents the complete dual modes of RocA in blocking translation initiation and elongation, which underlie the potent antitumor effect of RocA.
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[83]
Rocaglates as Antivirals: Comparing the Effects on Viral Resistance ...Mar 3, 2022 · Rocaglates are potent broad-spectrum antiviral compounds with a promising safety profile. They inhibit viral protein synthesis for different RNA ...Missing: polysome | Show results with:polysome
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[84]
Massively Parallel Polyribosome Profiling Reveals Translation ...Sep 16, 2025 · Overall, our study provides insights into the molecular mechanisms of UTR mutations and their links to clinical impacts through translation ...<|control11|><|separator|>
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[85]
Polysome-profiling in small tissue samples - PMC - PubMed CentralOct 23, 2017 · Here we present a polysome-profiling technique applicable to large study designs, primary cells and frozen tissue samples such as those collected in biobanks.